Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,393,734 |
A→G |
G61G (GGT→GGC) |
nuoJ ← |
NADH dehydrogenase I chain J |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,393,734 | 0 | A | G | 99.2%
| 404.7
/ ‑4.6
| 129 | G61G (GGT→GGC) | nuoJ | NADH dehydrogenase I chain J |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (69/59); total (70/59) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.39e-01 |
Only 100 of 140 total aligned reads displayed.
CTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAG > NC_000913/2393644‑2393823
|
cTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGcc > 2:1965538/1‑93 (MQ=255)
cTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACCGACACGAACAGCACCATAATAGCGcc > 2:1317271/1‑93 (MQ=255)
tGCGTTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGccc < 2:2121005/93‑1 (MQ=255)
gCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCcg < 2:3816674/93‑1 (MQ=255)
ggTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCcgcg > 2:3618008/1‑93 (MQ=255)
gTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGt < 1:1062243/93‑1 (MQ=255)
gTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGt < 1:1909633/93‑1 (MQ=255)
gTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGt < 1:1909634/93‑1 (MQ=255)
gTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCAACCCGAACACGAACAGCACCATAATAGCGCCCGCGt > 1:2575197/1‑93 (MQ=255)
tttCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTa > 1:1420722/1‑93 (MQ=255)
ttCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAg < 1:3931624/93‑1 (MQ=255)
tCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGa < 1:4140325/93‑1 (MQ=255)
cAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGAc > 2:2172307/1‑93 (MQ=255)
aGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACg > 2:2177714/1‑93 (MQ=255)
aGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACg > 1:2651253/1‑93 (MQ=255)
gCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGa > 1:4594814/1‑93 (MQ=255)
gCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCACCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGa > 2:3868588/1‑93 (MQ=255)
cACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATC‑TTAACACGGACCCGAAACGGACCATAAATGCGCCCGCGTAGACGATaa > 2:790249/1‑93 (MQ=255)
cACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATC‑TCACCACGAACACGAACAGCACCATAATGGAGCCCGCGTAGACGATaa > 2:790250/1‑93 (MQ=255)
aCTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATaa < 2:3989226/93‑1 (MQ=255)
aCTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATaa > 2:1492587/1‑93 (MQ=255)
cTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAAt < 1:4551345/93‑1 (MQ=255)
tGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAAtt > 2:1556244/1‑93 (MQ=255)
ggCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAAttt < 1:2281897/93‑1 (MQ=255)
gCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTc < 2:3719029/93‑1 (MQ=255)
gTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCa > 1:2150356/1‑93 (MQ=255)
gTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCa > 1:4672253/1‑93 (MQ=255)
gTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCa < 1:2928350/93‑1 (MQ=255)
ttCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAg < 1:3443648/93‑1 (MQ=255)
ttCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAg < 1:4410458/93‑1 (MQ=255)
tCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAgc > 1:225001/1‑93 (MQ=255)
tCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAgc < 2:836293/93‑1 (MQ=255)
tGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCa > 1:2541202/1‑93 (MQ=255)
tCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCg > 1:1336250/1‑93 (MQ=255)
cGATTTCTGAATCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCgg < 2:1661164/93‑1 (MQ=255)
aTTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCg > 1:1421943/1‑93 (MQ=255)
tttCTGAACCTCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGTCGCCCGCGTAGACGATAATTTCCAGCGCACCTGCGa > 2:4199337/1‑93 (MQ=255)
tttCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGa > 2:369850/1‑93 (MQ=255)
tttCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGa > 1:1076342/1‑93 (MQ=255)
tttCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGa < 2:4267200/93‑1 (MQ=255)
tCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAg < 2:3017580/93‑1 (MQ=255)
tGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTa > 1:1351745/1‑93 (MQ=255)
gAACCGCCCCGGTTGAGCATCACCCCCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTaa < 2:4695199/93‑1 (MQ=255)
gAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTaa < 1:2094634/93‑1 (MQ=255)
gAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTaa > 1:3486706/1‑93 (MQ=255)
aaCCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAg < 1:2483876/93‑1 (MQ=255)
aaCCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAg > 1:846398/1‑93 (MQ=255)
aaCCGCCCAGGTTGAGCATCAGCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAg < 2:219922/93‑1 (MQ=255)
aCCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAgc > 1:4685790/1‑93 (MQ=255)
cGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAgcgc > 1:3194057/1‑93 (MQ=255)
cccAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGccc < 2:590105/93‑1 (MQ=255)
cccAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGccc < 2:4328395/93‑1 (MQ=255)
ccAGGTTGAGTATCATTACCACGAACACGAACACCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCGCCGGCGAAGTAAGCGCCCa < 2:2292478/93‑1 (MQ=255)
cAGGTTGAGCATCATCAGCACGAGCACGAACAGCACCATAATGGCGCCCGCGGAGACGATAATTTCGAGCGCACCGGCGAAGAAAGAGCCCAg > 2:2967158/1‑93 (MQ=255)
cAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAg > 1:3851909/1‑93 (MQ=255)
aGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGt < 1:1782709/93‑1 (MQ=255)
aGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGt < 2:2020536/93‑1 (MQ=255)
ggTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTg > 1:2918146/1‑93 (MQ=255)
gTTGAGCATCATCACCACGAACACGAACAGCAGCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCGCCGGCGAAGTAAGCGCCCAGTga < 1:467344/93‑1 (MQ=255)
gAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGagaa > 1:4308948/1‑93 (MQ=255)
aGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGagaag < 1:3165081/93‑1 (MQ=255)
gCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGagaaga > 1:3706145/1‑93 (MQ=255)
gCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGagaaga > 2:3999810/1‑93 (MQ=255)
catcatCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAgaagaa > 1:726589/1‑93 (MQ=255)
atcatcACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAac < 2:2388824/93‑1 (MQ=255)
atcatcACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAac < 2:263636/93‑1 (MQ=255)
tcatcaCCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAaca < 1:4401136/93‑1 (MQ=255)
tcatcaCCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAaca > 2:2966910/1‑93 (MQ=255)
catcaCCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAacac < 2:3017213/93‑1 (MQ=255)
catcaCCACGAACACGAACAGCACCATAATAGCGCCCGCGTAGACGATAATTTCCAGTGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAacac > 2:4153888/1‑93 (MQ=255)
tcaCCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACAccc < 1:409945/93‑1 (MQ=255)
tcaCCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACAccc > 1:624144/1‑93 (MQ=255)
ccaccacGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACcccc < 2:875003/92‑1 (MQ=255)
accacGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCg > 1:1202266/1‑93 (MQ=255)
acgaacacgaacAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGaa > 2:3282349/1‑93 (MQ=255)
cgaacacgaacaGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGaaa < 2:1295370/93‑1 (MQ=255)
gaacacgaacaGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAAt > 1:1745561/1‑93 (MQ=255)
aacacgaacaGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATc > 1:1088069/1‑93 (MQ=255)
acacgaacaGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCg > 2:4141404/1‑93 (MQ=255)
acacgaacaGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCg > 2:1860651/1‑93 (MQ=255)
acgaacaGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGcc > 1:438211/1‑93 (MQ=255)
acgaacaGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGcc > 2:3336119/1‑93 (MQ=255)
cgaacaGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCca < 2:3637163/93‑1 (MQ=255)
gaacaGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCcag < 2:2885967/93‑1 (MQ=255)
gaacaGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCcag < 1:3631709/93‑1 (MQ=255)
acaGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGAACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCcagca < 1:4296485/93‑1 (MQ=255)
caGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCcagcag > 1:594089/1‑93 (MQ=255)
caGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCcagcag < 1:4021418/93‑1 (MQ=255)
caGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCcagcag > 2:631651/1‑93 (MQ=255)
aGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCagcagc > 1:3762887/1‑93 (MQ=255)
aGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCagcagc > 1:1814037/1‑93 (MQ=255)
gCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCg > 2:4263365/1‑93 (MQ=255)
aCCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGaa > 2:3702408/1‑93 (MQ=255)
cATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAaat < 2:3467921/93‑1 (MQ=255)
aTAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAaata < 1:267653/93‑1 (MQ=255)
tAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAaataa > 1:2423189/1‑93 (MQ=255)
tAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAaataa > 1:3215841/1‑93 (MQ=255)
aaTGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAaataat < 1:831744/93‑1 (MQ=255)
aaTGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAaataat > 2:1521437/1‑93 (MQ=255)
tGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCa > 2:2795217/1‑93 (MQ=255)
|
CTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAG > NC_000913/2393644‑2393823
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTA > NC_000913/2393642‑2393826
|
ACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGC > SRR4302544.2780993/1‑94 (MQ=60)
GGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGT > SRR4302544.2599940/1‑94 (MQ=60)
GGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCAGCGT > SRR4302544.2239167/1‑94 (MQ=60)
GGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCAACCCGAACACGAACAGCACCATAATAGCGCCCGCGT > SRR4302544.2599941/1‑94 (MQ=60)
GTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTA < SRR4302544.1072806/94‑1 (MQ=60)
GTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTA < SRR4302544.1928091/94‑1 (MQ=60)
GTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTA > SRR4302544.1434868/1‑94 (MQ=60)
GTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTA < SRR4302544.1928090/94‑1 (MQ=60)
TTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGA < SRR4302544.3970676/94‑1 (MQ=60)
TCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGAC < SRR4302544.4181314/94‑1 (MQ=60)
CAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACG < SRR4302544.3612422/94‑1 (MQ=60)
CAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACG > SRR4302544.2676677/1‑94 (MQ=60)
AGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGA > SRR4302544.4640516/1‑94 (MQ=60)
CTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATT < SRR4302544.4596783/94‑1 (MQ=60)
GGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTC < SRR4302544.2303395/94‑1 (MQ=60)
CGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCA > SRR4302544.4718431/1‑94 (MQ=60)
CGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCA > SRR4302544.2170824/1‑94 (MQ=60)
GTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAG < SRR4302544.2956490/94‑1 (MQ=60)
TTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGG > SRR4302544.1129698/1‑94 (MQ=60)
TTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGC < SRR4302544.4454990/94‑1 (MQ=60)
TTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGC > SRR4302544.227334/1‑94 (MQ=60)
TTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGC < SRR4302544.3476557/94‑1 (MQ=60)
CTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCA > SRR4302544.2565599/1‑94 (MQ=60)
TGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCAC < SRR4302544.530944/94‑1 (MQ=60)
CGTTCGATTTCTGACCCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCAC < SRR4302544.2088138/94‑1 (MQ=60)
TTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCG < SRR4302544.1801427/94‑1 (MQ=60)
TTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCG < SRR4302544.4707677/94‑1 (MQ=60)
TTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCG > SRR4302544.1349426/1‑94 (MQ=60)
TCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGG < SRR4302544.688359/94‑1 (MQ=60)
GATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCG > SRR4302544.1436097/1‑94 (MQ=60)
ATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGA > SRR4302544.1087042/1‑94 (MQ=60)
TTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAG < SRR4302544.2060623/94‑1 (MQ=60)
TTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAG > SRR4302544.2925556/1‑94 (MQ=60)
CTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTA > SRR4302544.1365147/1‑94 (MQ=60)
TGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAA > SRR4302544.4008003/1‑94 (MQ=60)
TGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAA > SRR4302544.3519936/1‑94 (MQ=60)
GAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAG > SRR4302544.854756/1‑94 (MQ=60)
GAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAG < SRR4302544.2114790/94‑1 (MQ=60)
AACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGC > SRR4302544.4732105/1‑94 (MQ=60)
AACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGC < SRR4302544.2507660/94‑1 (MQ=60)
AACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCAAGCGCACCGGCGAAGAAAGC > SRR4302544.4217171/1‑94 (MQ=60)
CCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGC > SRR4302544.3224493/1‑94 (MQ=60)
CCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAG > SRR4302544.3890144/1‑94 (MQ=60)
AGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTG < SRR4302544.1356972/94‑1 (MQ=60)
AGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTG < SRR4302544.1800141/94‑1 (MQ=60)
AGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTG > SRR4302544.2946204/1‑94 (MQ=60)
AGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTG < SRR4302544.3887867/94‑1 (MQ=60)
GTTGAGCATCATCACCACGAACACGAACAGCAGCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCGCCGGCGAAGTAAGCGCCCAGTGAG < SRR4302544.471922/94‑1 (MQ=60)
TGAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAA > SRR4302544.4352875/1‑94 (MQ=60)
GAGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAG < SRR4302544.4383532/94‑1 (MQ=60)
AGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGA < SRR4302544.3195191/94‑1 (MQ=60)
AGCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGA > SRR4302544.3743025/1‑94 (MQ=60)
GCATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAA > SRR4302544.733720/1‑94 (MQ=60)
ATCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACA < SRR4302544.3073052/94‑1 (MQ=60)
TCATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACAC < SRR4302544.4445609/94‑1 (MQ=60)
ATCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCC > SRR4302544.630272/1‑94 (MQ=60)
TCACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCC < SRR4302544.414123/94‑1 (MQ=60)
CACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCG > SRR4302544.3472469/1‑94 (MQ=60)
CACCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCG > SRR4302544.1214179/1‑94 (MQ=60)
CCACGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGCACACACAGGA > SRR4302544.160032/1‑94 (MQ=60)
CGAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAAT > SRR4302544.1762649/1‑94 (MQ=60)
GAACACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATC > SRR4302544.1098890/1‑94 (MQ=60)
CACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGATAAGAACACCCCGGAAATCGCC < SRR4302544.2468797/94‑1 (MQ=60)
CACGAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCC > SRR4302544.442614/1‑94 (MQ=60)
GAACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGC < SRR4302544.3667897/94‑1 (MQ=60)
ACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAG > SRR4302544.599922/1‑94 (MQ=60)
ACAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGAACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAG < SRR4302544.4340335/94‑1 (MQ=60)
CAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGC < SRR4302544.4061451/94‑1 (MQ=60)
CAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGC > SRR4302544.1831747/1‑94 (MQ=60)
CAGCACCATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGC > SRR4302544.3800229/1‑94 (MQ=60)
ACCATAATGGCGCCCGCGTAGACGATAATTTCAAGCGCACCTGCGAAGTAAGCGCCCAGGGAGAAGAACACCCCGGAAATAGCCAGCAGCGAAA > SRR4302544.3033176/1‑94 (MQ=60)
ATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAA > SRR4302544.3246518/1‑94 (MQ=60)
ATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAA < SRR4302544.270481/94‑1 (MQ=60)
ATAATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAA > SRR4302544.2446260/1‑94 (MQ=60)
AATGGCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATC < SRR4302544.839927/94‑1 (MQ=60)
GCGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGA > SRR4302544.4514498/1‑94 (MQ=60)
CGCCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTA < SRR4302544.565260/94‑1 (MQ=60)
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ACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTA > NC_000913/2393642‑2393826
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
