Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,442,106 |
A→G |
S28S (AGT→AGC) |
b2325 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,442,106 | 0 | A | G | 99.3%
| 454.5
/ ‑4.8
| 142 | S28S (AGT→AGC) | b2325 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (84/57); total (84/58) |
| Fisher's exact test for biased strand distribution p-value = 4.08e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.91e-01 |
Only 100 of 146 total aligned reads displayed.
GCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTT > NC_000913/2442016‑2442195
|
gCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCt < 2:2152461/93‑1 (MQ=255)
gCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCt < 2:3535369/93‑1 (MQ=255)
cTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTg < 1:2383317/93‑1 (MQ=255)
cTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTg > 2:3308608/1‑93 (MQ=255)
cTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTg > 2:3308607/1‑93 (MQ=255)
aaCGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGc > 1:830538/1‑93 (MQ=255)
ggTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCaac > 1:2620774/1‑92 (MQ=255)
ggTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCaaa > 2:3583915/1‑93 (MQ=255)
ggTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCaaa > 1:1267585/1‑93 (MQ=255)
gTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAaac > 1:2759124/1‑93 (MQ=255)
cGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAaacaa < 1:3775696/93‑1 (MQ=255)
cGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAaacaa < 1:378957/93‑1 (MQ=255)
gTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAaacaac > 2:1097477/1‑93 (MQ=255)
tGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtca < 2:2354596/93‑1 (MQ=255)
tGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtca > 2:2956768/1‑93 (MQ=255)
cACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatc < 2:3980626/93‑1 (MQ=255)
ccGCCTGAGCGGAGTGGTTATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGACACGCAAATANNCGCTGGCAAACAACtcatnat > 1:16275/1‑93 (MQ=255)
ccGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcat > 1:1331148/1‑93 (MQ=255)
ccGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcat > 1:2646433/1‑93 (MQ=255)
ccGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcat > 2:1968500/1‑93 (MQ=255)
ccGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcat > 2:416859/1‑93 (MQ=255)
ccGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcat > 2:416860/1‑93 (MQ=255)
ccTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCAc > 1:3578137/1‑93 (MQ=255)
ccTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCAc < 1:3326294/93‑1 (MQ=255)
gAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATTCCCGCTGGCAAACAACTCATCATCACTgg > 2:1793808/1‑93 (MQ=255)
gAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTgg < 2:1546454/93‑1 (MQ=255)
ggAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATg > 2:149810/1‑93 (MQ=255)
ggAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATg > 2:727387/1‑93 (MQ=255)
attgTGGTCCTCGCCACTTTCCAGTTCTGCGATGGCTAATGACAGGTAACCACGCACCTGCCCGCTGACAACCACTTCATGGTCATAGGCATg < 2:1274694/90‑1 (MQ=255)
gAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACCACTCATCATCACTGGCAtcg > 2:566724/1‑91 (MQ=255)
gTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCGTCACTGGCATGGTc > 2:650825/1‑93 (MQ=255)
gTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTc > 1:1119862/1‑93 (MQ=255)
gTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTc > 2:4001307/1‑93 (MQ=255)
ggTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCaa > 2:2331986/1‑93 (MQ=255)
tcatcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAAcc > 1:4229602/1‑93 (MQ=255)
tcatcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAAcc > 1:4066469/1‑93 (MQ=255)
catcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCa > 2:2239109/1‑93 (MQ=255)
catcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCa > 2:1614097/1‑93 (MQ=255)
catcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCa > 2:2989893/1‑93 (MQ=255)
atcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCAt > 2:2809035/1‑93 (MQ=255)
atcaCCACTTTCCAGTTCTGCGATGACTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCAt < 2:2264719/93‑1 (MQ=255)
tcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATa > 2:3984681/1‑93 (MQ=255)
tcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATa > 2:1300798/1‑93 (MQ=255)
tcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATa < 1:1866487/93‑1 (MQ=255)
tcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATa < 2:726027/93‑1 (MQ=255)
tcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATa < 1:1932420/93‑1 (MQ=255)
caccacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAc < 1:4323351/93‑1 (MQ=255)
caccacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAc < 1:2489437/93‑1 (MQ=255)
accacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAcc > 1:4622308/1‑93 (MQ=255)
ccacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCg > 1:4552783/1‑93 (MQ=255)
ttCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGAt < 1:1202911/93‑1 (MQ=255)
tCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGAtt > 1:2192231/1‑93 (MQ=255)
ccAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTa > 1:3745612/1‑93 (MQ=255)
cAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTaa < 1:1095193/93‑1 (MQ=255)
gCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGa < 1:388618/93‑1 (MQ=255)
cGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGaa < 1:1641408/93‑1 (MQ=255)
cGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGaa < 1:3033664/93‑1 (MQ=255)
gATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAAt > 1:3811722/1‑93 (MQ=255)
aTGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATg < 1:114669/93‑1 (MQ=255)
tGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGc > 2:2571916/1‑93 (MQ=255)
ggCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCg > 1:1793241/1‑93 (MQ=255)
gCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGt > 1:2766895/1‑93 (MQ=255)
cTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTg > 1:1306067/1‑93 (MQ=255)
tAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGTCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGa > 2:965929/1‑93 (MQ=255)
tAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGa > 2:1976376/1‑93 (MQ=255)
aTGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGAtt > 2:1036942/1‑93 (MQ=255)
tGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTc > 2:2957248/1‑93 (MQ=255)
tCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCaa > 2:3861993/1‑93 (MQ=255)
cAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCACCCATACCGTCGATTAATGCCAGAATGCGTGATTCaaa < 1:2221914/93‑1 (MQ=255)
cAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCaaa < 2:3201255/93‑1 (MQ=255)
aGGTGGCCACGCACATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAc < 1:1936648/93‑1 (MQ=255)
aGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAc > 1:3144958/1‑93 (MQ=255)
aGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAc < 1:533381/93‑1 (MQ=255)
aGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAc > 1:708484/1‑93 (MQ=255)
aGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAc > 1:3144957/1‑93 (MQ=255)
ggTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACt < 2:2203748/93‑1 (MQ=255)
ggTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACt < 2:3710648/93‑1 (MQ=255)
ggTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACt < 2:2203749/93‑1 (MQ=255)
gCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACAATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcgc < 2:3447210/93‑1 (MQ=255)
gCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcgc < 1:4018094/93‑1 (MQ=255)
ccACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcgcg < 2:241924/93‑1 (MQ=255)
cACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGa > 1:3160771/1‑93 (MQ=255)
aCGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGat < 1:796986/93‑1 (MQ=255)
aCGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGat > 1:56510/1‑93 (MQ=255)
aCGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGat > 1:3075886/1‑93 (MQ=255)
cGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatc < 2:904436/93‑1 (MQ=255)
cGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatc < 1:3634061/93‑1 (MQ=255)
cGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatc < 1:3463317/93‑1 (MQ=255)
gCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatca > 2:61709/1‑93 (MQ=255)
gCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatca < 2:528667/93‑1 (MQ=255)
gCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatca < 1:4061252/93‑1 (MQ=255)
gCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatca < 2:1077708/93‑1 (MQ=255)
ccAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatca < 1:4061251/92‑1 (MQ=255)
aaTACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtct > 2:3174206/1‑93 (MQ=255)
aaTACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtct > 1:810582/1‑93 (MQ=255)
aaTACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtct > 1:1729922/1‑93 (MQ=255)
aTACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtctt < 2:2623860/93‑1 (MQ=255)
aCCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtcttct > 2:2817546/1‑93 (MQ=255)
aCCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtcttct > 2:2445988/1‑93 (MQ=255)
cccGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATcttctt < 2:3823478/93‑1 (MQ=255)
|
GCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTT > NC_000913/2442016‑2442195
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTCC > NC_000913/2442015‑2442198
|
GGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCT < SRR4302544.1964586/94‑1 (MQ=60)
GGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCT < SRR4302544.381029/94‑1 (MQ=60)
CTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGG < SRR4302544.2405885/94‑1 (MQ=60)
TAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGC > SRR4302544.838705/1‑94 (MQ=60)
ACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAA > SRR4302544.2591307/1‑94 (MQ=60)
CGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAC > SRR4302544.2645911/1‑94 (MQ=60)
CGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAA > SRR4302544.1280049/1‑94 (MQ=60)
GGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAAC > SRR4302544.2785674/1‑94 (MQ=60)
CGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAAC < SRR4302544.382818/94‑1 (MQ=60)
CGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAAC < SRR4302544.3813115/94‑1 (MQ=60)
GTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAAacact > SRR4302544.3396352/1‑89 (MQ=60)
ATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCA > SRR4302544.1863741/1‑94 (MQ=60)
CACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCA > SRR4302544.913388/1‑94 (MQ=60)
ACCGCCTGAGCGGAGTGGTTATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGACACGCAAATANNCGCTGGCAAACAACTCATNAT > SRR4302544.16433/1‑94 (MQ=60)
ACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCAT > SRR4302544.2671816/1‑94 (MQ=60)
ACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCAT > SRR4302544.1344247/1‑94 (MQ=60)
ACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCAT > SRR4302544.2212206/1‑94 (MQ=60)
GCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCAC > SRR4302544.3612460/1‑94 (MQ=60)
CCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACT < SRR4302544.3357972/94‑1 (MQ=60)
AGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCA < SRR4302544.1163194/94‑1 (MQ=60)
CGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATG > SRR4302544.4571684/1‑94 (MQ=60)
GAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGT < SRR4302544.374551/94‑1 (MQ=60)
gaTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTC < SRR4302544.3171899/92‑1 (MQ=60)
AGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTC > SRR4302544.1131032/1‑94 (MQ=60)
GTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATGCCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACC < SRR4302544.4101555/94‑1 (MQ=60)
GTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACC > SRR4302544.4106956/1‑94 (MQ=60)
GTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACC > SRR4302544.4272696/1‑94 (MQ=60)
ATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATA > SRR4302544.3500838/1‑94 (MQ=60)
TCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAC < SRR4302544.1951121/94‑1 (MQ=60)
TCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAC < SRR4302544.1884527/94‑1 (MQ=60)
CACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACC > SRR4302544.4668161/1‑94 (MQ=60)
CACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACC < SRR4302544.4367385/94‑1 (MQ=60)
CACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACC < SRR4302544.2513282/94‑1 (MQ=60)
CACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACC > SRR4302544.3305989/1‑94 (MQ=60)
ACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCG > SRR4302544.4598229/1‑94 (MQ=60)
TTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGAT < SRR4302544.1302645/94‑1 (MQ=60)
TTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATT < SRR4302544.1214829/94‑1 (MQ=60)
TTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATT > SRR4302544.2212928/1‑94 (MQ=60)
TCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTA > SRR4302544.3782822/1‑94 (MQ=60)
TCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTA < SRR4302544.3815074/94‑1 (MQ=60)
CAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAAT < SRR4302544.1106089/94‑1 (MQ=60)
CAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAAT > SRR4302544.3892675/1‑94 (MQ=60)
AGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCCTCACTGGCATGGTCAACCATACCGTCGATTTATG > SRR4302544.2316545/1‑94 (MQ=60)
GCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAA < SRR4302544.392566/94‑1 (MQ=60)
CGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAAT < SRR4302544.3062723/94‑1 (MQ=60)
CGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAAT > SRR4302544.3849502/1‑94 (MQ=60)
CGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAAT < SRR4302544.2674282/94‑1 (MQ=60)
CGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAAT < SRR4302544.1657582/94‑1 (MQ=60)
ATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGC < SRR4302544.115714/94‑1 (MQ=60)
TGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCG > SRR4302544.1810772/1‑94 (MQ=60)
GGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGT > SRR4302544.2793502/1‑94 (MQ=60)
GCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTG > SRR4302544.1318904/1‑94 (MQ=60)
CAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCACCCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC < SRR4302544.2242815/94‑1 (MQ=60)
CAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC < SRR4302544.138584/94‑1 (MQ=60)
CAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC < SRR4302544.1659571/94‑1 (MQ=60)
CAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC > SRR4302544.715516/1‑94 (MQ=60)
CAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC < SRR4302544.4757388/94‑1 (MQ=60)
CAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC > SRR4302544.4116618/1‑94 (MQ=60)
CAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC > SRR4302544.3174858/1‑94 (MQ=60)
CAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC > SRR4302544.3174857/1‑94 (MQ=60)
AGGTGGCCACGCACATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACT < SRR4302544.1955394/94‑1 (MQ=60)
AGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACT < SRR4302544.538664/94‑1 (MQ=60)
GCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCG < SRR4302544.4058065/94‑1 (MQ=60)
CCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGA > SRR4302544.3190831/1‑94 (MQ=60)
CCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGA < SRR4302544.2995850/94‑1 (MQ=60)
CACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGAT > SRR4302544.57077/1‑94 (MQ=60)
CACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGAT > SRR4302544.3105197/1‑94 (MQ=60)
ACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATC < SRR4302544.804715/94‑1 (MQ=60)
CGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCA < SRR4302544.3670298/94‑1 (MQ=60)
CGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCA < SRR4302544.3496362/94‑1 (MQ=60)
GCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAT < SRR4302544.4101695/94‑1 (MQ=60)
CCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAT < SRR4302544.4101694/94‑1 (MQ=60)
AAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCT > SRR4302544.1746886/1‑94 (MQ=60)
AAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCT > SRR4302544.818485/1‑94 (MQ=60)
AAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCT > SRR4302544.818486/1‑94 (MQ=60)
ATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTC > SRR4302544.645211/1‑94 (MQ=60)
CCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTT > SRR4302544.3447843/1‑94 (MQ=60)
CCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTC < SRR4302544.2661563/94‑1 (MQ=60)
CGCTGGCAAACAACTAATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTCC < SRR4302544.2145083/94‑1 (MQ=60)
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GGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTCC > NC_000913/2442015‑2442198
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
