Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,448,171 |
T→C |
N147S (AAC→AGC) |
b2333 ← |
putative fimbrial‑like protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,448,171 | 0 | T | C | 97.0%
| 411.9
/ 1.9
| 135 | N147S (AAC→AGC) | b2333 | putative fimbrial‑like protein |
| Reads supporting (aligned to +/- strand): ref base T (3/1); new base C (63/68); total (66/69) |
| Fisher's exact test for biased strand distribution p-value = 3.58e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.37e-01 |
Only 100 of 138 total aligned reads displayed.
TCAAATGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGTTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACT > NC_000913/2448081‑2448260
|
tCAAATGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTa > 2:2732970/1‑93 (MQ=255)
cAAATGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTAt > 2:2710257/1‑93 (MQ=255)
cAAATGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTAt < 2:4336353/93‑1 (MQ=255)
aaaTGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTAtt < 2:1577418/93‑1 (MQ=255)
aaaTGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTAtt > 1:2072958/1‑93 (MQ=255)
aaaTGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTAtt < 2:4630621/93‑1 (MQ=255)
aaaTGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTAtt > 1:4037431/1‑93 (MQ=255)
aggTCTCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGc < 1:3091895/91‑1 (MQ=255)
aTGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGc > 1:2834965/1‑93 (MQ=255)
aTGTCGCAGTTAAAGAGGCGGTAAATTCACAGATCGTCAGATCACGGCCGCTTCTCGCCTGTCACCGGCATCTGAAATTGATATCGCGATTGc > 2:3851359/1‑93 (MQ=255)
gTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCa > 1:4553315/1‑93 (MQ=255)
gTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCa < 2:2853605/93‑1 (MQ=255)
gTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCa > 1:652715/1‑93 (MQ=255)
tCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCAt > 1:4695355/1‑93 (MQ=255)
tCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCAt > 2:2880094/1‑93 (MQ=255)
tCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCAt < 1:3241860/93‑1 (MQ=255)
cGCAGTTAAAGAGGCGGTAAATTCTCCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCAtt < 1:677984/93‑1 (MQ=255)
gCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTGGCCAGGCTCTGAAATTGATATCGCTATTGCCATTg > 1:4097122/1‑93 (MQ=255)
gCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTg > 1:1712375/1‑93 (MQ=255)
gCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTg < 1:999785/93‑1 (MQ=255)
aGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGt < 2:4733928/93‑1 (MQ=255)
gTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGtt > 1:3725777/1‑93 (MQ=255)
ttAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTa < 2:3888567/93‑1 (MQ=255)
ttAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTa < 1:3678546/93‑1 (MQ=255)
ttAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTa < 1:3511868/93‑1 (MQ=255)
ttAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTa < 2:1900841/93‑1 (MQ=255)
tAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAg > 2:80157/1‑93 (MQ=255)
tAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAg > 2:619842/1‑93 (MQ=255)
tAAAGAGCAGGTCAATTCACCGATCGTCACATCACGGCCGCTTGTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAg < 2:241920/93‑1 (MQ=255)
aaaGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAgc < 2:4380888/93‑1 (MQ=255)
aaGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAgcg > 2:499290/1‑93 (MQ=255)
agagGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAgcgc < 1:2301813/93‑1 (MQ=255)
agagGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATGGCCATTGGTTAgcgc < 1:2301814/93‑1 (MQ=255)
gCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAg > 1:3373101/1‑93 (MQ=255)
gCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAg < 2:3812696/93‑1 (MQ=255)
ggTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGt < 2:3879179/93‑1 (MQ=255)
ggTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGt > 1:3090591/1‑93 (MQ=255)
ggTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGt < 1:2202908/93‑1 (MQ=255)
gTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTc > 2:4668722/1‑93 (MQ=255)
tAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCg < 2:4591155/93‑1 (MQ=255)
tAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCg > 2:2437445/1‑93 (MQ=255)
aTTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGccc < 1:2960446/93‑1 (MQ=255)
cACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCAt < 2:1918896/93‑1 (MQ=255)
ccGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCAttt < 2:1653598/93‑1 (MQ=255)
cGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTg > 1:251185/1‑93 (MQ=255)
gATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGt > 1:936087/1‑93 (MQ=255)
aTCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTa < 1:2981818/93‑1 (MQ=255)
cGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGTTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAtt > 1:4495777/1‑93 (MQ=255)
cGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAtt < 1:925516/93‑1 (MQ=255)
gTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAttg > 2:3714987/1‑93 (MQ=255)
gTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAttg > 2:1788391/1‑93 (MQ=255)
tCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGTTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAttgt > 1:1552403/1‑93 (MQ=255)
tCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAttgt > 2:2754862/1‑93 (MQ=255)
cacaTCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAttgtt < 1:2453861/93‑1 (MQ=255)
cacaTCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAttgtt < 2:211858/93‑1 (MQ=255)
acaTCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAttgttg > 2:3324259/1‑93 (MQ=255)
acaTCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAttgttg > 2:1688068/1‑93 (MQ=255)
caTCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGa < 2:2839202/93‑1 (MQ=255)
caTCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGa < 1:1156148/93‑1 (MQ=255)
caTCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGa < 1:3288834/93‑1 (MQ=255)
ggCCGCTTTTCGCCTGTAGCCAGGCTCCGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCaa < 2:4105896/93‑1 (MQ=255)
gCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAAc > 2:3081249/1‑93 (MQ=255)
cGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCt > 2:344404/1‑93 (MQ=255)
gCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTg > 2:4072768/1‑93 (MQ=255)
gCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTg > 1:3365123/1‑93 (MQ=255)
gCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTg < 2:3433454/93‑1 (MQ=255)
cTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGc < 2:771141/93‑1 (MQ=255)
cTTTTCGACTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGc > 1:2706891/1‑93 (MQ=255)
ttttCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCa > 2:1655928/1‑93 (MQ=255)
ttttCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCa < 2:525471/93‑1 (MQ=255)
ttCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCAtt < 2:2019753/93‑1 (MQ=255)
cGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTcc < 1:1350833/93‑1 (MQ=255)
cGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTcc < 1:3511380/93‑1 (MQ=255)
gCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTATATTGTTGATGGCAACCTGCATTCCg < 1:2730950/93‑1 (MQ=255)
ccTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGt < 2:1867729/93‑1 (MQ=255)
ccTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGt > 2:1223325/1‑93 (MQ=255)
tGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCg > 2:4697057/1‑93 (MQ=255)
tGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCg < 2:4743729/93‑1 (MQ=255)
tGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCg > 2:2209319/1‑93 (MQ=255)
gTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCgg < 1:2994145/93‑1 (MQ=255)
gCCAGGCTCTGAAATTGATATCGCTATCGCCATGGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGttt < 2:3190337/93‑1 (MQ=255)
aGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGtttttt > 1:1799295/1‑93 (MQ=255)
ggCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTc > 1:3580937/1‑93 (MQ=255)
ggCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTc < 2:1556656/93‑1 (MQ=255)
gCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTcc < 1:4390469/93‑1 (MQ=255)
ctctGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCa < 1:3263941/93‑1 (MQ=255)
tctGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCAt > 2:1722684/1‑93 (MQ=255)
tctGAAATGGATATCGCTATTGCCATTGGCTAGCGCAAAGGTCGCGCCATTTGTATTGTTGATTTCAACCTGCATTCCGTCGGTTTTTTCCAt > 2:3543477/1‑93 (MQ=255)
tGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGc > 2:2482066/1‑93 (MQ=255)
aTTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAAt > 1:937592/1‑93 (MQ=255)
ttGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAAtt > 1:107388/1‑93 (MQ=255)
gATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTcc < 1:2298971/93‑1 (MQ=255)
atatCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTccc > 1:1550007/1‑93 (MQ=255)
atatCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTccc < 2:1080029/93‑1 (MQ=255)
tatCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCa < 1:4481937/93‑1 (MQ=255)
atCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCAc > 2:2922466/1‑93 (MQ=255)
atCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCAc < 1:2117811/93‑1 (MQ=255)
tCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACt > 1:3738481/1‑93 (MQ=255)
tCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACt > 1:4632366/1‑93 (MQ=255)
tCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACt < 1:1506279/93‑1 (MQ=255)
|
TCAAATGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGTTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACT > NC_000913/2448081‑2448260
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAAATGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGTTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCT > NC_000913/2448082‑2448264
|
CAAATGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATT > SRR4302544.2092874/1‑94 (MQ=60)
CAAATGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATT > SRR4302544.4077636/1‑94 (MQ=60)
AATGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGC > SRR4302544.2862354/1‑94 (MQ=60)
AGGTCTCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCC < SRR4302544.3121346/94‑1 (MQ=60)
TGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCA > SRR4302544.4598765/1‑94 (MQ=60)
TGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCA > SRR4302544.659178/1‑94 (MQ=60)
GTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCAT > SRR4302544.4741719/1‑94 (MQ=60)
TCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATT < SRR4302544.3272890/94‑1 (MQ=60)
CGCAGTTAAAGAGGCGGTAAATTCTCCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTG < SRR4302544.684706/94‑1 (MQ=60)
CGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTGGCCAGGCTCTGAAATTGATATCGCTATTGCCATTG > SRR4302544.4137896/1‑94 (MQ=60)
CGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTG > SRR4302544.1729228/1‑94 (MQ=60)
GCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGG < SRR4302544.1009687/94‑1 (MQ=60)
AGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTT > SRR4302544.3762828/1‑94 (MQ=60)
TTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAG < SRR4302544.3715237/94‑1 (MQ=60)
TTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAG < SRR4302544.3545372/94‑1 (MQ=60)
AAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCG < SRR4302544.532684/94‑1 (MQ=60)
AGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCA < SRR4302544.2323548/94‑1 (MQ=60)
AGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATGGCCATTGGTTAGCGCA < SRR4302544.2323549/94‑1 (MQ=60)
GGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAG > SRR4302544.3405306/1‑94 (MQ=60)
CGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGT > SRR4302544.3120036/1‑94 (MQ=60)
GGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTC < SRR4302544.2691231/94‑1 (MQ=60)
GGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTC < SRR4302544.1819817/94‑1 (MQ=60)
GGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTC < SRR4302544.2223659/94‑1 (MQ=60)
GTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGACATTGGTTAGCGCAAAGGACG > SRR4302544.3139561/1‑94 (MQ=60)
ATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCC < SRR4302544.2988864/94‑1 (MQ=60)
CACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATT > SRR4302544.3470673/1‑94 (MQ=60)
CACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATT > SRR4302544.697639/1‑94 (MQ=60)
CCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTG > SRR4302544.253826/1‑94 (MQ=60)
CGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGT > SRR4302544.945311/1‑94 (MQ=60)
ATCGTCACATCACGGCCTCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAT < SRR4302544.1378405/94‑1 (MQ=60)
ATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTAT < SRR4302544.3010415/94‑1 (MQ=60)
TCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGTTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATT > SRR4302544.4540900/1‑94 (MQ=60)
CGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTG < SRR4302544.934637/94‑1 (MQ=60)
GTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGTTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGT > SRR4302544.1567856/1‑94 (MQ=60)
CACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTG > SRR4302544.2880787/1‑94 (MQ=60)
CACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTG < SRR4302544.2477268/94‑1 (MQ=60)
CATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGAT > SRR4302544.1601529/1‑94 (MQ=60)
CATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGAT < SRR4302544.3320172/94‑1 (MQ=60)
CATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGAT < SRR4302544.1167653/94‑1 (MQ=60)
ATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATG < SRR4302544.3882631/94‑1 (MQ=60)
TCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGG < SRR4302544.977615/94‑1 (MQ=60)
CACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGC < SRR4302544.4166835/94‑1 (MQ=60)
CACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGC < SRR4302544.3052839/94‑1 (MQ=60)
CGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTG > SRR4302544.3397245/1‑94 (MQ=60)
CGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTG > SRR4302544.3397246/1‑94 (MQ=60)
GCTTTTCGACTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGC > SRR4302544.2732914/1‑94 (MQ=60)
CTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCA > SRR4302544.3636265/1‑94 (MQ=60)
CGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCG < SRR4302544.3544880/94‑1 (MQ=60)
CGCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCG < SRR4302544.1364222/94‑1 (MQ=60)
GCCTGTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTATATTGTTGATGGCAACCTGCATTCCGT < SRR4302544.2757272/94‑1 (MQ=60)
GTAGCCAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGT < SRR4302544.3022851/94‑1 (MQ=60)
CAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTT > SRR4302544.4563172/1‑94 (MQ=60)
CAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTT > SRR4302544.1816882/1‑94 (MQ=60)
CAGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTT < SRR4302544.2320352/94‑1 (MQ=60)
AGGCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTC > SRR4302544.3615290/1‑94 (MQ=60)
GCTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCA < SRR4302544.4434897/94‑1 (MQ=60)
CTCTGAAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCAT < SRR4302544.3295109/94‑1 (MQ=60)
AAATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGACAA > SRR4302544.2338023/1‑94 (MQ=60)
AATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAAT > SRR4302544.946828/1‑94 (MQ=60)
ATTGATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATT > SRR4302544.108370/1‑94 (MQ=60)
GATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCC < SRR4302544.2320667/94‑1 (MQ=60)
GATATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCC > SRR4302544.1565445/1‑94 (MQ=60)
TATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCAC < SRR4302544.4526983/94‑1 (MQ=60)
ATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACT > SRR4302544.4678280/1‑94 (MQ=60)
ATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACT < SRR4302544.2138149/94‑1 (MQ=60)
ATCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACT > SRR4302544.3775640/1‑94 (MQ=60)
TCGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTC < SRR4302544.1521205/94‑1 (MQ=60)
CGCTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCC > SRR4302544.3630846/1‑94 (MQ=60)
CTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCT > SRR4302544.2069895/1‑94 (MQ=60)
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CAAATGTCGCAGTTAAAGAGGCGGTAAATTCACCGATCGTCACATCACGGCCGCTTTTCGCCTGTAGCCAGGCTCTGAAATTGATATCGTTATTGCCATTGGTTAGCGCAAAGGTCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCT > NC_000913/2448082‑2448264
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
