Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,448,289 |
C→T |
A108T (GCA→ACA) |
b2333 ← |
putative fimbrial‑like protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,448,289 | 0 | C | T | 100.0%
| 444.2
/ NA
| 128 | A108T (GCA→ACA) | b2333 | putative fimbrial‑like protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (62/66); total (62/66) |
Only 100 of 135 total aligned reads displayed.
CCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGCCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAA > NC_000913/2448199‑2448378
|
ccccATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCa < 2:828672/93‑1 (MQ=255)
cccATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAg > 2:1433260/1‑93 (MQ=255)
ccATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGa > 2:1731377/1‑93 (MQ=255)
cATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGaa < 2:4370858/93‑1 (MQ=255)
cATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGaa < 2:1265485/93‑1 (MQ=255)
tttGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGaaaa < 2:705545/93‑1 (MQ=255)
ttGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAAc < 1:4577063/93‑1 (MQ=255)
gTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCg < 2:1917045/93‑1 (MQ=255)
gTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCg < 2:585477/93‑1 (MQ=255)
tATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCgg < 2:2126474/93‑1 (MQ=255)
aTTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGGCGTATCCAGTGTCAGAAAACCggg > 2:3934660/1‑93 (MQ=255)
gATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTc > 2:1004360/1‑93 (MQ=255)
gATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGAAGTATCCAGTGTCAGAAAACCGGGTTGTTc < 2:4037431/93‑1 (MQ=255)
aTGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGATTGTTCg > 1:4684452/1‑93 (MQ=255)
gCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTg > 2:1551641/1‑93 (MQ=255)
cAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGt < 2:2340172/93‑1 (MQ=255)
cAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGt < 2:4451126/93‑1 (MQ=255)
aaCCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtc < 2:3695937/93‑1 (MQ=255)
aCCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtct > 2:853651/1‑93 (MQ=255)
cTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtcttc > 1:2077568/1‑93 (MQ=255)
cTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtcttc < 1:3265513/93‑1 (MQ=255)
gCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTa < 2:1023441/93‑1 (MQ=255)
cATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑c < 2:2562114/93‑1 (MQ=255)
cATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑c < 2:2746362/93‑1 (MQ=255)
aTTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑cc < 2:2560542/93‑1 (MQ=255)
ttCCGTCGGTTTTTTCCATGCCAATTCCCACTCGCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑ccc > 1:1827279/1‑93 (MQ=255)
ttCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑ccc > 1:182258/1‑93 (MQ=255)
tCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑cccc < 1:3324259/93‑1 (MQ=255)
gTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGt > 1:2243848/1‑93 (MQ=255)
tCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTg > 1:2452096/1‑93 (MQ=255)
tCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTg > 2:4002896/1‑93 (MQ=255)
cGGTTTTTTCCATGCCAATTTCCACTCCCTGAGCGGGTGATTAACTAACCAGTGTTAGAAAAACCGGGTGTTCGCTGTCTTTTA‑ACCCCCTGa > 2:1953736/1‑93 (MQ=255)
ggTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAg > 2:4619010/1‑93 (MQ=255)
ggTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAg > 2:29990/1‑93 (MQ=255)
ggTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAg > 1:2161302/1‑93 (MQ=255)
cgTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAg < 1:3758884/92‑1 (MQ=255)
ttttttCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCg > 1:1607951/1‑93 (MQ=255)
ttttCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTg < 2:1639705/93‑1 (MQ=255)
ttttCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTg < 1:2710257/93‑1 (MQ=255)
ccATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACtt > 2:4475478/1‑93 (MQ=255)
ccATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACtt < 2:3244324/93‑1 (MQ=255)
cATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACttt > 1:1577542/1‑93 (MQ=255)
aTGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACtttt > 1:2761633/1‑93 (MQ=255)
tGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGAGAGCGTGACTTTTa > 2:1169582/1‑93 (MQ=255)
tgcAATTCCCCCTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTAc < 1:1630683/91‑1 (MQ=255)
gCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTAc < 1:2858511/93‑1 (MQ=255)
ccAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACg < 1:4275511/93‑1 (MQ=255)
cAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGt < 1:2880094/93‑1 (MQ=255)
aaTTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGtt > 1:3912980/1‑93 (MQ=255)
aTTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTg > 1:3385507/1‑93 (MQ=255)
aTTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTg > 1:371781/1‑93 (MQ=255)
aTTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTg > 1:2751301/1‑93 (MQ=255)
tgccACTCCACGAGCGGTTGATGACGTCACCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTa < 1:3864526/91‑1 (MQ=255)
tCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTa > 1:548805/1‑93 (MQ=255)
tCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTa < 1:1801318/93‑1 (MQ=255)
tCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTa < 2:3090591/93‑1 (MQ=255)
cccACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTAt > 1:1525898/1‑93 (MQ=255)
cccACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTAt > 1:1389422/1‑93 (MQ=255)
ccACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATc > 1:38264/1‑93 (MQ=255)
cACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATcc < 1:4668722/93‑1 (MQ=255)
cACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATcc > 1:3247184/1‑93 (MQ=255)
cACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCACGTGAGCGTGGCTTTTACGTTGTAttc > 1:2663096/1‑91 (MQ=255)
cTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCccg > 1:380582/1‑93 (MQ=255)
cTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGCGAGCGTGACTTTTACGTTGTATCccg > 2:236071/1‑93 (MQ=255)
tCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTATGTTGTATCccgc > 1:3675619/1‑93 (MQ=255)
tCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCccgc > 2:2631541/1‑93 (MQ=255)
tCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCccgc > 2:2267261/1‑93 (MQ=255)
ccccTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCccgc < 1:2364382/92‑1 (MQ=255)
cccTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCccgcc > 2:1577116/1‑93 (MQ=255)
cccTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCccgcc > 1:3209282/1‑93 (MQ=255)
cccTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCccgcc > 2:718817/1‑93 (MQ=255)
cccTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCccgcc < 2:907216/93‑1 (MQ=255)
ccTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCccgccg > 1:1138382/1‑93 (MQ=255)
tGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGc < 1:2175021/93‑1 (MQ=255)
tGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGc > 1:2640275/1‑93 (MQ=255)
gCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCt < 1:3391933/93‑1 (MQ=255)
gCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCt < 2:377928/93‑1 (MQ=255)
gCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCt < 2:377929/93‑1 (MQ=255)
cGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCtt < 1:1433260/93‑1 (MQ=255)
ggTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCttt < 2:2393211/93‑1 (MQ=255)
ggTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCttt < 2:4442671/93‑1 (MQ=255)
gTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTg < 1:3993921/93‑1 (MQ=255)
ttGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGc < 2:937592/93‑1 (MQ=255)
ttGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGc < 2:1425874/93‑1 (MQ=255)
tgaCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATc < 2:251185/93‑1 (MQ=255)
tgaCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATc > 1:2884183/1‑93 (MQ=255)
tgaCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATc > 1:2884182/1‑93 (MQ=255)
gaCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCt < 1:452900/93‑1 (MQ=255)
gaCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCt > 1:1994717/1‑93 (MQ=255)
gaCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCt > 1:1994718/1‑93 (MQ=255)
aCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCCATCtt > 1:1145679/1‑93 (MQ=255)
aCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCtt < 2:3373101/93‑1 (MQ=255)
cGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCttt > 2:1142443/1‑93 (MQ=255)
gTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTc > 2:1201127/1‑93 (MQ=255)
tATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCa > 2:4465834/1‑93 (MQ=255)
tCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGc < 2:3420919/93‑1 (MQ=255)
ccAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGc > 1:1054620/1‑93 (MQ=255)
ccAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCt < 2:833121/93‑1 (MQ=255)
aGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTa < 2:2635153/93‑1 (MQ=255)
gtgtCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTaa < 2:2316101/93‑1 (MQ=255)
|
CCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGCCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAA > NC_000913/2448199‑2448378
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGCCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAAAGAC > NC_000913/2448196‑2448382
|
TCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGT > SRR4302544.381427/1‑94 (MQ=60)
TCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGT > SRR4302544.3092395/1‑94 (MQ=60)
GCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCA > SRR4302544.261809/1‑94 (MQ=60)
CCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAG > SRR4302544.4667830/1‑94 (MQ=60)
CCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAG < SRR4302544.1364585/94‑1 (MQ=60)
CCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGA > SRR4302544.2362860/1‑94 (MQ=60)
TTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAAC > SRR4302544.3495055/1‑94 (MQ=60)
TTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACC < SRR4302544.4622668/94‑1 (MQ=60)
TGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCG > SRR4302544.389375/1‑94 (MQ=60)
GTATTGTTGATGGCACCCTGCATTCCGTCGGTTTTTTCCATGCCACTTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGG < SRR4302544.4258366/94‑1 (MQ=60)
GATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCG < SRR4302544.2889362/94‑1 (MQ=60)
GATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGATTGTTCG > SRR4302544.4730756/1‑94 (MQ=60)
ACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTT < SRR4302544.3123663/94‑1 (MQ=60)
CCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTC > SRR4302544.2097536/1‑94 (MQ=60)
CTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCT < SRR4302544.3296687/94‑1 (MQ=60)
ATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCGCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCC > SRR4302544.1845064/1‑94 (MQ=60)
ATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCC > SRR4302544.184059/1‑94 (MQ=60)
TCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCC < SRR4302544.3355922/94‑1 (MQ=60)
CGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGT > SRR4302544.2264951/1‑94 (MQ=60)
GTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTG > SRR4302544.2475485/1‑94 (MQ=60)
CGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAG > SRR4302544.2181825/1‑94 (MQ=60)
CGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGC < SRR4302544.3796195/94‑1 (MQ=60)
GTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCG > SRR4302544.1623802/1‑94 (MQ=60)
TTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGA < SRR4302544.2736323/94‑1 (MQ=60)
CCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTT > SRR4302544.1593132/1‑94 (MQ=60)
CATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTT > SRR4302544.2788199/1‑94 (MQ=60)
tgCAATTCCCCCTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACG < SRR4302544.1646732/92‑1 (MQ=60)
GCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACG < SRR4302544.2886105/94‑1 (MQ=60)
CCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGT < SRR4302544.673432/94‑1 (MQ=60)
CCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGT < SRR4302544.4319164/94‑1 (MQ=60)
CAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTT > SRR4302544.156164/1‑94 (MQ=60)
CAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTT < SRR4302544.2907884/94‑1 (MQ=60)
CAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTT > SRR4302544.3951853/1‑94 (MQ=60)
AATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTG > SRR4302544.375574/1‑94 (MQ=60)
AATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTG > SRR4302544.2777799/1‑94 (MQ=60)
AATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTG > SRR4302544.3417858/1‑94 (MQ=60)
AATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTG < SRR4302544.2121426/94‑1 (MQ=60)
TTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTA > SRR4302544.554186/1‑94 (MQ=60)
TGCCACTCCACGAGCGGTTGATGACGTCACCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTAT < SRR4302544.3902896/94‑1 (MQ=60)
TCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTAT > SRR4302544.1403293/1‑94 (MQ=60)
TCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTAT > SRR4302544.1541049/1‑94 (MQ=60)
TCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTAT < SRR4302544.1818921/94‑1 (MQ=60)
CCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATC > SRR4302544.38641/1‑94 (MQ=60)
CCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCC > SRR4302544.3278269/1‑94 (MQ=60)
CCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCACGTGAGCGTGGCTTTTACGTTGTATTC > SRR4302544.2688627/1‑94 (MQ=60)
CACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCC < SRR4302544.4714880/94‑1 (MQ=60)
CACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCC < SRR4302544.1817788/94‑1 (MQ=60)
ACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCG > SRR4302544.384458/1‑94 (MQ=60)
CTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTATGTTGTATCCCGC > SRR4302544.3712274/1‑94 (MQ=60)
TCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCC > SRR4302544.3239888/1‑94 (MQ=60)
CCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCC < SRR4302544.2386763/94‑1 (MQ=60)
CCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCG > SRR4302544.1149702/1‑94 (MQ=60)
CTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGC > SRR4302544.2665583/1‑94 (MQ=60)
TGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCC < SRR4302544.2195629/94‑1 (MQ=60)
GCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTT < SRR4302544.3424360/94‑1 (MQ=60)
GCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTT < SRR4302544.1954971/94‑1 (MQ=60)
CGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTT < SRR4302544.1447525/94‑1 (MQ=60)
GTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGC < SRR4302544.4033673/94‑1 (MQ=60)
ATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATC > SRR4302544.2911999/1‑94 (MQ=60)
ATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATC > SRR4302544.2911998/1‑94 (MQ=60)
TGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCT > SRR4302544.2014084/1‑94 (MQ=60)
TGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCT > SRR4302544.2014085/1‑94 (MQ=60)
GACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCCATCTT > SRR4302544.1157079/1‑94 (MQ=60)
GACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTT < SRR4302544.457386/94‑1 (MQ=60)
GTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCA < SRR4302544.2759314/94‑1 (MQ=60)
GTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCA < SRR4302544.33534/94‑1 (MQ=60)
TCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGC > SRR4302544.1065076/1‑94 (MQ=60)
CCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTT > SRR4302544.3602171/1‑94 (MQ=60)
AGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAA > SRR4302544.3841842/1‑94 (MQ=60)
TGTCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAAAG > SRR4302544.554624/1‑94 (MQ=60)
GTCAGAAAACCGGGTTGTTACCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGGTGTATCCAGCCGGCCGTTTCCAATCTTTCAtctgaaaaa > SRR4302544.1615986/1‑85 (MQ=60)
TCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAAAGAC > SRR4302544.1467888/1‑94 (MQ=60)
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TCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGCCAGAAAACCGGGTTGTTCGCTGTCTTCTA‑CCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAAAGAC > NC_000913/2448196‑2448382
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
