Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,448,289	C→T	A108T (GCA→ACA)	b2333 ←	putative fimbrial‑like protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,448,289	0	C	T	100.0%	849.8 / NA	232	A108T (GCA→ACA)	b2333	putative fimbrial‑like protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (113/119); total (113/119)

Only 100 of 239 total aligned reads displayed.

CCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGCCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAA  >  NC_000913/2448199‑2448378

ccccATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCa                                                                                         >  2:5918883/1‑93 (MQ=255)

 cccATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAg                                                                                        >  1:6302287/1‑93 (MQ=255)

 cccATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAg                                                                                        >  2:185746/1‑93 (MQ=255)

   cATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGaa                                                                                      >  2:1571941/1‑93 (MQ=255)

   cATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGaa                                                                                      <  1:3067094/93‑1 (MQ=255)

   cATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGaa                                                                                      <  1:1929229/93‑1 (MQ=255)

    aTTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCGCACTCCCTGAGCGGGTGATGACGTATCCAGTGTCAGaaa                                                                                     >  1:2200050/1‑93 (MQ=255)

    aTTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGaaa                                                                                     <  1:3865947/93‑1 (MQ=255)

    aTTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGaaa                                                                                     >  1:910360/1‑93 (MQ=255)

     tttGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGaaaa                                                                                    >  1:4262292/1‑93 (MQ=255)

     tttGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGaaaa                                                                                    <  1:5138573/93‑1 (MQ=255)

      ttGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAAc                                                                                   <  1:4892531/93‑1 (MQ=255)

       tGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAAcc                                                                                  >  2:6345695/1‑93 (MQ=255)

        gTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCg                                                                                 >  1:449418/1‑93 (MQ=255)

         tATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCgg                                                                                >  2:1978193/1‑93 (MQ=255)

         tATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCgg                                                                                >  1:5824371/1‑93 (MQ=255)

           ttgttgATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGgt                                                                              >  2:6078076/1‑93 (MQ=255)

           ttgttgATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGgt                                                                              >  2:393963/1‑93 (MQ=255)

           ttgttgATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGgt                                                                              >  1:4050089/1‑93 (MQ=255)

           ttgttgATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGgt                                                                              <  1:1694812/93‑1 (MQ=255)

             gttgATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGgttt                                                                            >  2:1800534/1‑92 (MQ=255)

             gttgATGGCAACCTGCATTCCGTCGGTTTTTGCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGgttg                                                                            <  2:1361496/93‑1 (MQ=255)

                gATGGCAGCCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCTCTCCCTGAGCGGTTGATGACGTACCCAGTGTCAGAAAACCGGGTTGTTc                                                                         <  1:3129375/93‑1 (MQ=255)

                  tGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGc                                                                       <  1:1473330/93‑1 (MQ=255)

                   ggCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCt                                                                      <  1:3265357/93‑1 (MQ=255)

                     cAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGt                                                                    <  2:5017827/93‑1 (MQ=255)

                     cAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGt                                                                    <  1:6680513/93‑1 (MQ=255)

                      aaCCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtc                                                                   <  2:4882253/93‑1 (MQ=255)

                       aCCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtct                                                                  <  2:876220/93‑1 (MQ=255)

                       aCCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtct                                                                  <  2:4222408/93‑1 (MQ=255)

                       aCCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtct                                                                  >  1:4010423/1‑93 (MQ=255)

                        ccTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGTTGACGTATCCAGGGTCAGAAAACCGGGTTGTTCGCTGtctt                                                                 >  2:5105384/1‑93 (MQ=255)

                         ctccATTCCGTCGGTTCTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGATGGTCGCTGtcttc                                                                >  1:4732951/4‑93 (MQ=255)

                         cTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtcttc                                                                <  2:5457857/93‑1 (MQ=255)

                         cTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtcttc                                                                <  2:4637955/93‑1 (MQ=255)

                         cTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtcttc                                                                >  2:6161175/1‑93 (MQ=255)

                         cTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtcttc                                                                <  1:3560310/93‑1 (MQ=255)

                          tGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGtcttct                                                               <  2:3531826/93‑1 (MQ=255)

                           gCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTa                                                              >  2:34483/1‑93 (MQ=255)

                           gCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTa                                                              <  1:4943006/93‑1 (MQ=255)

                             aTTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTAcc                                                            >  1:5836023/1‑93 (MQ=255)

                             aTTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTAcc                                                            >  1:1332133/1‑93 (MQ=255)

                             aTTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTAcc                                                            >  1:2223202/1‑93 (MQ=255)

                                ccGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTAccccc                                                         <  2:402035/93‑1 (MQ=255)

                                  gTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGt                                                       >  2:1545060/1‑93 (MQ=255)

                                  gTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGt                                                       >  2:5352049/1‑93 (MQ=255)

                                   tCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTg                                                      <  1:2351452/93‑1 (MQ=255)

                                   tCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTg                                                      >  1:4354273/1‑93 (MQ=255)

                                   tCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTg                                                      >  2:5988186/1‑93 (MQ=255)

                                      gTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGc                                                   <  1:2733393/93‑1 (MQ=255)

                                       ttttttCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCg                                                  <  1:5188425/93‑1 (MQ=255)

                                        tttttCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGt                                                 >  2:6448040/1‑93 (MQ=255)

                                        tttttCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGt                                                 <  2:1287151/93‑1 (MQ=255)

                                          tttCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGa                                               >  1:5456469/1‑93 (MQ=255)

                                          tttCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGa                                               >  2:2080403/1‑93 (MQ=255)

                                            tCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGTGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACt                                             <  1:5756471/93‑1 (MQ=255)

                                            tCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACt                                             <  2:3008503/93‑1 (MQ=255)

                                            tCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACt                                             <  1:1523089/93‑1 (MQ=255)

                                               aTGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACtttt                                          >  2:3725215/1‑93 (MQ=255)

                                                 gCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTAc                                        >  2:3665275/1‑93 (MQ=255)

                                                 gCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTAc                                        >  1:6245128/1‑93 (MQ=255)

                                                  ccAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAATCCGGGTTGTTCGCTGTCTTCTCCCCCCGTGAGCGTGACTTTTACg                                       <  1:2623286/93‑1 (MQ=255)

                                                  ccAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACg                                       <  2:663663/93‑1 (MQ=255)

                                                   cAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGt                                      <  1:6011218/93‑1 (MQ=255)

                                                   cAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGt                                      <  2:2386271/93‑1 (MQ=255)

                                                   cAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGt                                      <  1:3724822/93‑1 (MQ=255)

                                                    aaTTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGtt                                     <  1:2665433/93‑1 (MQ=255)

                                                     aTTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTg                                    <  2:1495093/93‑1 (MQ=255)

                                                      ttCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGt                                   >  1:1766015/1‑93 (MQ=255)

                                                      ttCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGt                                   <  2:2784480/93‑1 (MQ=255)

                                                        cccACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTAt                                 <  1:6618818/93‑1 (MQ=255)

                                                        cccACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTAt                                 <  1:4676189/93‑1 (MQ=255)

                                                         ccACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATc                                >  1:3036644/1‑93 (MQ=255)

                                                          cACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATcc                               <  2:5546185/93‑1 (MQ=255)

                                                            cTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCccg                             >  2:5801836/1‑93 (MQ=255)

                                                             tCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCccgc                            >  2:3750246/1‑93 (MQ=255)

                                                             tCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCccgc                            >  1:844857/1‑93 (MQ=255)

                                                             tCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCccgc                            <  2:4540888/93‑1 (MQ=255)

                                                               ccTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCccgccg                          <  2:5675404/93‑1 (MQ=255)

                                                                 tGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGc                        >  1:2738917/1‑93 (MQ=255)

                                                                 tGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGc                        <  2:2577757/93‑1 (MQ=255)

                                                                  gAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGcc                       >  2:4288514/1‑93 (MQ=255)

                                                                    gCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCt                     >  2:2677912/1‑93 (MQ=255)

                                                                    gCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCt                     >  1:810038/1‑93 (MQ=255)

                                                                    gCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCt                     <  1:6179759/93‑1 (MQ=255)

                                                                     cGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCtt                    >  2:913402/1‑93 (MQ=255)

                                                                      ggTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCttt                   <  2:4888265/93‑1 (MQ=255)

                                                                      ggTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCttt                   <  2:2418227/93‑1 (MQ=255)

                                                                       gTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTg                  >  1:4146564/1‑93 (MQ=255)

                                                                          gatgaCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCaa               <  1:1218088/93‑1 (MQ=255)

                                                                            tgaCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATc             >  1:3712177/1‑93 (MQ=255)

                                                                             gaCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTGCGTTGTATCCCGCCGGCCCTTTGCAATCt            <  1:5593507/93‑1 (MQ=255)

                                                                             gaCGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTATGTTGTATCCCGCCGGCCCTTTGCAATCt            >  1:5078345/1‑93 (MQ=255)

                                                                                   tCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGc      >  2:2231172/1‑93 (MQ=255)

                                                                                     cAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCtt    >  1:6040556/1‑93 (MQ=255)

                                                                                     cAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTCTCAGCtt    >  1:2813745/1‑93 (MQ=255)

                                                                                      aGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTa   >  2:3190169/1‑93 (MQ=255)

                                                                                      aGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTa   >  2:2729655/1‑93 (MQ=255)

                                                                                       gtgtCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCttta  >  1:1189622/1‑91 (MQ=255)

                                                                                       gtgtCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTaa  >  2:5386502/1‑93 (MQ=255)

CCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGCCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAA  >  NC_000913/2448199‑2448378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGCCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAAAGAC  >  NC_000913/2448196‑2448382

TCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGT                                                                                               >  SRR4302536.4969176/1‑94 (MQ=60)

  GCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCA                                                                                             >  SRR4302536.559749/1‑94 (MQ=60)

   CCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAG                                                                                            >  SRR4302536.2861359/1‑94 (MQ=60)

   CCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAG                                                                                            >  SRR4302536.6490029/1‑94 (MQ=60)

   CCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAG                                                                                            <  SRR4302536.3724770/94‑1 (MQ=60)

   CCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAG                                                                                            >  SRR4302536.5284911/1‑94 (MQ=60)

   CCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAG                                                                                            >  SRR4302536.4871637/1‑94 (MQ=60)

    CCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGA                                                                                           >  SRR4302536.1512085/1‑94 (MQ=60)

    CCCATTTGTATTGTTGATGAAAACCTGCATTCCGTCGGTTTTTTCCATGCGAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGA                                                                                           >  SRR4302536.4079/1‑94 (MQ=60)

     CCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAA                                                                                          <  SRR4302536.1359090/94‑1 (MQ=60)

     CCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAA                                                                                          >  SRR4302536.1812589/1‑94 (MQ=60)

     CCATTTGTATTGTTGATGGCAACCTGCATTCCATCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAA                                                                                          >  SRR4302536.61041/1‑94 (MQ=60)

      CATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCGCACTCCCTGAGCGGGTGATGACGTATCCAGTGTCAGAAA                                                                                         >  SRR4302536.2266457/1‑94 (MQ=60)

      CATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAA                                                                                         <  SRR4302536.3157001/94‑1 (MQ=60)

      CATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAA                                                                                         >  SRR4302536.937189/1‑94 (MQ=60)

      CATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAA                                                                                         <  SRR4302536.1987268/94‑1 (MQ=60)

       ATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAA                                                                                        <  SRR4302536.3980988/94‑1 (MQ=60)

       ATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAA                                                                                        >  SRR4302536.4389322/1‑94 (MQ=60)

       ATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAA                                                                                        >  SRR4302536.3117068/1‑94 (MQ=60)

        TTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAAC                                                                                       >  SRR4302536.551450/1‑94 (MQ=60)

        TTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAAC                                                                                       <  SRR4302536.5291969/94‑1 (MQ=60)

        TTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAAC                                                                                       <  SRR4302536.5159712/94‑1 (MQ=60)

         TTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACC                                                                                      <  SRR4302536.5039691/94‑1 (MQ=60)

          TGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCG                                                                                     >  SRR4302536.461228/1‑94 (MQ=60)

           GTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCGTGCCAATTCCCACTCCCTGAGCGGTTGATGACGTCTCCAGTGTCAGACAAACGG                                                                                    >  SRR4302536.2271707/1‑94 (MQ=60)

           GTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGG                                                                                    <  SRR4302536.3836006/94‑1 (MQ=60)

           GTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGG                                                                                    <  SRR4302536.315073/94‑1 (MQ=60)

           GTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGG                                                                                    >  SRR4302536.2327433/1‑94 (MQ=60)

           GTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGG                                                                                    >  SRR4302536.5997895/1‑94 (MQ=60)

            TATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGG                                                                                   <  SRR4302536.2783010/94‑1 (MQ=60)

             ATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGT                                                                                  <  SRR4302536.5306323/94‑1 (MQ=60)

             ATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGT                                                                                  >  SRR4302536.4170153/1‑94 (MQ=60)

              TTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTT                                                                                 <  SRR4302536.1743878/94‑1 (MQ=60)

               TGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTG                                                                                <  SRR4302536.992742/94‑1 (MQ=60)

                 TTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTT                                                                              <  SRR4302536.3397418/94‑1 (MQ=60)

                   GATGGCAGCCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCTCTCCCTGAGCGGTTGATGACGTACCCAGTGTCAGAAAACCGGGTTGTTCG                                                                            <  SRR4302536.3220855/94‑1 (MQ=60)

                   GATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCG                                                                            >  SRR4302536.849989/1‑94 (MQ=60)

                   GATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCG                                                                            <  SRR4302536.668659/94‑1 (MQ=60)

                     TGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCT                                                                          <  SRR4302536.1516892/94‑1 (MQ=60)

                      GGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTG                                                                         <  SRR4302536.3361196/94‑1 (MQ=60)

                       GCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGT                                                                        <  SRR4302536.1835322/94‑1 (MQ=60)

                        CAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTC                                                                       <  SRR4302536.4661150/94‑1 (MQ=60)

                        CAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTC                                                                       <  SRR4302536.3017450/94‑1 (MQ=60)

                        CAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTC                                                                       <  SRR4302536.6878961/94‑1 (MQ=60)

                         AACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCT                                                                      >  SRR4302536.4129424/1‑94 (MQ=60)

                          ACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTT                                                                     <  SRR4302536.2619018/94‑1 (MQ=60)

                           CCTCCATTCCGTCGGTTCTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGATGGTCGCTGTCTTC                                                                    >  SRR4302536.4875389/1‑94 (MQ=60)

                            CTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCT                                                                   >  SRR4302536.270516/1‑94 (MQ=60)

                            CTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCT                                                                   <  SRR4302536.3666755/94‑1 (MQ=60)

                              GCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTAC                                                                 <  SRR4302536.3129020/94‑1 (MQ=60)

                              GCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTAC                                                                 <  SRR4302536.5091549/94‑1 (MQ=60)

                               CATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACC                                                                >  SRR4302536.1371896/1‑94 (MQ=60)

                               CATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACC                                                                >  SRR4302536.6009900/1‑94 (MQ=60)

                               CATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACC                                                                >  SRR4302536.2290447/1‑94 (MQ=60)

                               CATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACC                                                                >  SRR4302536.2149747/1‑94 (MQ=60)

                                   CCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCG                                                            <  SRR4302536.4540655/94‑1 (MQ=60)

                                   CCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCG                                                            <  SRR4302536.6406852/94‑1 (MQ=60)

                                    CGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGT                                                           <  SRR4302536.1758264/94‑1 (MQ=60)

                                     GTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTG                                                          >  SRR4302536.4484521/1‑94 (MQ=60)

                                      TCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGA                                                         <  SRR4302536.2422733/94‑1 (MQ=60)

                                      TCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGA                                                         <  SRR4302536.6827211/94‑1 (MQ=60)

                                       CGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAG                                                        >  SRR4302536.5929518/1‑94 (MQ=60)

                                       CGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAG                                                        <  SRR4302536.4206760/94‑1 (MQ=60)

                                       CGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAG                                                        <  SRR4302536.4206762/94‑1 (MQ=60)

                                         GTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCG                                                      <  SRR4302536.2814855/94‑1 (MQ=60)

                                          TTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGT                                                     <  SRR4302536.5343169/94‑1 (MQ=60)

                                            TTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGA                                                   >  SRR4302536.5619630/1‑94 (MQ=60)

                                             TTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGAC                                                  <  SRR4302536.5915114/94‑1 (MQ=60)

                                              TTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACT                                                 <  SRR4302536.1414290/94‑1 (MQ=60)

                                               TCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGTGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTT                                                <  SRR4302536.5927714/94‑1 (MQ=60)

                                               TCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTT                                                <  SRR4302536.1567912/94‑1 (MQ=60)

                                                   TGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTAC                                            >  SRR4302536.6431170/1‑94 (MQ=60)

                                                     CCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAATCCGGGTTGTTCGCTGTCTTCTCCCCCCGTGAGCGTGACTTTTACGT                                          <  SRR4302536.2701980/94‑1 (MQ=60)

                                                      CAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTT                                         <  SRR4302536.3836161/94‑1 (MQ=60)

                                                      CAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTT                                         <  SRR4302536.3756058/94‑1 (MQ=60)

                                                      CAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTT                                         >  SRR4302536.5090574/1‑94 (MQ=60)

                                                      CAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTT                                         <  SRR4302536.6190427/94‑1 (MQ=60)

                                                       AATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTG                                        >  SRR4302536.72338/1‑94 (MQ=60)

                                                       AATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTG                                        >  SRR4302536.5802191/1‑94 (MQ=60)

                                                       AATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTG                                        <  SRR4302536.2745177/94‑1 (MQ=60)

                                                       AATTCCCACGCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTG                                        >  SRR4302536.6757503/1‑94 (MQ=60)

                                                        ATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGT                                       >  SRR4302536.1819418/1‑94 (MQ=60)

                                                         TTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTA                                      <  SRR4302536.4141628/94‑1 (MQ=60)

                                                          TCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTAT                                     <  SRR4302536.2816692/94‑1 (MQ=60)

                                                          TCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTAT                                     <  SRR4302536.6273452/94‑1 (MQ=60)

                                                           CCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATC                                    <  SRR4302536.6815596/94‑1 (MQ=60)

                                                           CCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATC                                    >  SRR4302536.6898786/1‑94 (MQ=60)

                                                           CCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATC                                    >  SRR4302536.3125917/1‑94 (MQ=60)

                                                           CCCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATC                                    <  SRR4302536.4816815/94‑1 (MQ=60)

                                                            CCACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCC                                   >  SRR4302536.3858683/1‑94 (MQ=60)

                                                             CACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCC                                  <  SRR4302536.1250747/94‑1 (MQ=60)

                                                             CACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCC                                  >  SRR4302536.2215094/1‑94 (MQ=60)

                                                             CACTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCC                                  >  SRR4302536.2464525/1‑94 (MQ=60)

                                                               CTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTAGCCCCGTGAGCGTGACTTTTACGTTGTATCCCGC                                >  SRR4302536.2757136/1‑94 (MQ=60)

                                                               CTCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGC                                >  SRR4302536.869694/1‑94 (MQ=60)

                                                               CTCCCTGAGCGGTCGATGACGCATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCGCGTGAGCGTGACTTTTACGTTGTATTCCGC                                >  SRR4302536.6382057/1‑94 (MQ=60)

                                                                TCCCTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCC                               >  SRR4302536.4379669/1‑94 (MQ=60)

                                                                   CTGAGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGC                            >  SRR4302536.2820523/1‑94 (MQ=60)

                                                                      AGCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCT                         >  SRR4302536.833793/1‑94 (MQ=60)

                                                                       GCGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTT                        <  SRR4302536.6363822/94‑1 (MQ=60)

                                                                        GGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTT                       <  SRR4302536.1606108/94‑1 (MQ=60)

                                                                        CGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTT                       <  SRR4302536.5320399/94‑1 (MQ=60)

                                                                        CGGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTT                       <  SRR4302536.3320902/94‑1 (MQ=60)

                                                                         GGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTG                      >  SRR4302536.4269592/1‑94 (MQ=60)

                                                                         GGTTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGACCGTCAATTTTACGTTGTATCCCGCCGGCCCTTTG                      <  SRR4302536.3224400/94‑1 (MQ=60)

                                                                           TTGATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCACCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCA                    <  SRR4302536.6058669/94‑1 (MQ=60)

                                                                             GATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAAT                  <  SRR4302536.1254675/94‑1 (MQ=60)

                                                                              ATGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATC                 >  SRR4302536.3823152/1‑94 (MQ=60)

                                                                               TGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTATGTTGTATCCCGCCGGCCCTTTGCAATCT                >  SRR4302536.5230328/1‑94 (MQ=60)

                                                                               TGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCT                <  SRR4302536.5184920/94‑1 (MQ=60)

                                                                               TGACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCT                <  SRR4302536.1539175/94‑1 (MQ=60)

                                                                                GACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTGCGTTGTATCCCGCCGGCCCTTTGCAATCTT               <  SRR4302536.5759808/94‑1 (MQ=60)

                                                                                GACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTT               >  SRR4302536.6465567/1‑94 (MQ=60)

                                                                                 ACGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTT              <  SRR4302536.2132936/94‑1 (MQ=60)

                                                                                  CGTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCAGCCCTTTGCAATCTTTC             >  SRR4302536.4560081/1‑94 (MQ=60)

                                                                                   GTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCA            >  SRR4302536.897097/1‑94 (MQ=60)

                                                                                   GTATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCA            <  SRR4302536.6004562/94‑1 (MQ=60)

                                                                                    TATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAG           <  SRR4302536.4034162/94‑1 (MQ=60)

                                                                                    TATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAG           >  SRR4302536.3169416/1‑94 (MQ=60)

                                                                                    TATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAG           <  SRR4302536.441435/94‑1 (MQ=60)

                                                                                     ATCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGC          >  SRR4302536.5029652/1‑94 (MQ=60)

                                                                                      TCCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCT         <  SRR4302536.6217385/94‑1 (MQ=60)

                                                                                       CCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGTCTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTT        <  SRR4302536.6243803/94‑1 (MQ=60)

                                                                                       CCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTT        >  SRR4302536.6220714/1‑94 (MQ=60)

                                                                                       CCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTT        <  SRR4302536.4843935/94‑1 (MQ=60)

                                                                                       CCAGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTCTCAGCTT        >  SRR4302536.2897123/1‑94 (MQ=60)

                                                                                         AGTGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTTA      >  SRR4302536.1225398/1‑94 (MQ=60)

                                                                                           TGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAAAG    <  SRR4302536.6853701/94‑1 (MQ=60)

                                                                                           TGTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAAAG    <  SRR4302536.5145443/94‑1 (MQ=60)

                                                                                            GTCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAAAGA   <  SRR4302536.3995999/94‑1 (MQ=60)

                                                                                             TCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAAAGAC  <  SRR4302536.765253/94‑1 (MQ=60)

                                                                                             TCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAAAGAC  >  SRR4302536.6058942/1‑94 (MQ=60)

TCGCCCCATTTGTATTGTTGATGGCAACCTGCATTCCGTCGGTTTTTTCCATGCCAATTCCCACTCCCTGAGCGGTTGATGACGTATCCAGTGCCAGAAAACCGGGTTGTTCGCTGTCTTCTACCCCCGTGAGCGTGACTTTTACGTTGTATCCCGCCGGCCCTTTGCAATCTTTCAGCTTAAAGAC  >  NC_000913/2448196‑2448382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`