Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,458,272 |
(G)5→4 |
coding (218/1311 nt) |
b2342 ← |
putative acyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,458,268 | 0 | G | . | 99.3%
| 613.7
/ ‑3.4
| 136 | coding (222/1311 nt) | b2342 | putative acyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (74/61); total (75/61) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.61e-01 |
Only 100 of 150 total aligned reads displayed.
CCTGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTGGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTA > NC_000913/2458177‑2458356
|
cTGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggg < 2:2196450/93‑1 (MQ=255)
cTGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggg < 2:4077189/93‑1 (MQ=255)
cTGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggg > 2:3639786/1‑93 (MQ=255)
cTGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggg > 1:4609624/1‑93 (MQ=255)
tGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTgggg > 1:3500734/1‑93 (MQ=255)
tGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTgggg > 1:2030354/1‑93 (MQ=255)
aaCTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggggcttc < 1:2343755/93‑5 (MQ=255)
tGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAgg > 2:4161164/1‑93 (MQ=255)
ggTAGCGCAAGCGCGGCTGCCGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGc < 2:4317172/93‑1 (MQ=255)
aGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCAtt > 2:4665998/1‑93 (MQ=255)
gcgcAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCAttt < 1:487953/93‑1 (MQ=255)
gcgcAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCAttt < 1:3197601/93‑1 (MQ=255)
cgcAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTg < 2:4012982/93‑1 (MQ=255)
cgcAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTg < 2:1094815/93‑1 (MQ=255)
gcAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGt < 2:758700/93‑1 (MQ=255)
aaGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTAc < 1:2173075/93‑1 (MQ=255)
aGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACg > 2:1300566/1‑93 (MQ=255)
aGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACg > 2:1024798/1‑93 (MQ=255)
gcgGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGAcc < 2:3316923/93‑1 (MQ=255)
gcgGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGAcc < 1:3412778/93‑1 (MQ=255)
gcgGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGAcc < 1:2959306/93‑1 (MQ=255)
cgGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGAccg > 2:853742/1‑92 (MQ=255)
cgGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCt > 1:1558328/1‑93 (MQ=255)
ggCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGTCATTTGTACGACCTg > 2:1050158/1‑93 (MQ=255)
cTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGAc > 2:2899901/1‑93 (MQ=255)
gACGCTGTAAGCATCGGTATGCACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGGT‑CGTGCTTCAGGCATTTGTACGACCTGACCa > 1:2895397/1‑93 (MQ=255)
cGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCaaa > 2:3460077/1‑93 (MQ=255)
ccTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAg < 2:1452765/92‑1 (MQ=255)
gTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGAcc > 1:2865519/1‑93 (MQ=255)
tAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCa > 1:4381494/1‑93 (MQ=255)
aaGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAg < 2:1168127/93‑1 (MQ=255)
aGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAgt < 2:2758373/93‑1 (MQ=255)
aGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAgt < 2:2758374/93‑1 (MQ=255)
gCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTGCACGCGCAATGTT‑CGGGCTTCAGGCATTTGTACGACCTGACAAAAGACCAgtt < 1:2408112/93‑1 (MQ=255)
cATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAgttg > 1:4608208/1‑93 (MQ=255)
cATCGGTATGTACATTCATTCCCGTACCGAGAACAATGTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAgttg < 1:3368457/93‑1 (MQ=255)
aTCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAgttgt > 2:988604/1‑93 (MQ=255)
aTCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAgttgt < 1:1393376/93‑1 (MQ=255)
tCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑TGTGCTTCAGGCATTTGTACGACCTGACCATACACCAgttgtt > 2:373481/1‑93 (MQ=255)
cGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTc > 2:2732329/1‑93 (MQ=255)
gTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCaa > 1:2548731/1‑93 (MQ=255)
gTATGTACACTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCaa > 1:3441786/1‑93 (MQ=255)
aTGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATc < 1:2375269/93‑1 (MQ=255)
tGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCa > 2:204525/1‑93 (MQ=255)
tGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCa > 1:1791933/1‑93 (MQ=255)
gTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCAc < 2:3071487/93‑1 (MQ=255)
tACAGTCATTCGCGTGCCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACt < 1:44628/93‑1 (MQ=255)
aCATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGAATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACtt < 1:1481188/93‑1 (MQ=255)
tattcattcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTc < 1:620519/92‑1 (MQ=255)
cattcattCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTc < 1:3794231/93‑1 (MQ=255)
ttcattcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTcgg > 1:4651734/1‑93 (MQ=255)
ttcattcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTcgg > 2:380448/1‑93 (MQ=255)
ttcattcCCGTAACGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTcgg < 2:4291071/93‑1 (MQ=255)
cattcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTcggcg > 1:1912275/1‑93 (MQ=255)
attcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTcggcgg < 1:3264797/93‑1 (MQ=255)
ttcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCggg < 2:3326820/93‑1 (MQ=255)
ttcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCggg > 2:4528698/1‑93 (MQ=255)
ttcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCggg > 2:2258373/1‑93 (MQ=255)
ttcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCggg > 1:3152898/1‑93 (MQ=255)
tcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCgggg < 1:226269/93‑1 (MQ=255)
tcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCgggg < 1:4740045/93‑1 (MQ=255)
tcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCgggg > 2:2379742/1‑93 (MQ=255)
cccGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGa > 2:1383331/1‑93 (MQ=255)
ccGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAt > 1:2042246/1‑93 (MQ=255)
gTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAtct < 1:1096297/93‑1 (MQ=255)
tACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAtctc < 1:1253754/93‑1 (MQ=255)
tACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAtctc < 2:2061120/93‑1 (MQ=255)
tACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAtctc > 1:2920250/1‑93 (MQ=255)
tACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAtctc < 2:3459795/93‑1 (MQ=255)
ccGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGc < 1:260573/93‑1 (MQ=255)
cGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCCAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGcc > 2:3709735/1‑92 (MQ=255)
cGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGCTCTCGCt > 1:907760/1‑93 (MQ=255)
gagaACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGGTCTCGCTg > 1:4020790/1‑93 (MQ=255)
gagaACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTg > 2:1965398/1‑93 (MQ=255)
gagaACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTg > 2:4092439/1‑93 (MQ=255)
gagaACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGAGGGGATCTCGCTg > 2:1975004/1‑93 (MQ=255)
agaACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGc > 2:4531265/1‑93 (MQ=255)
agaACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGc > 2:1820575/1‑93 (MQ=255)
agaACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGc < 2:3509405/93‑1 (MQ=255)
gaACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCg < 2:2401293/93‑1 (MQ=255)
gaACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCg > 1:3763175/1‑93 (MQ=255)
aaCAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGt < 1:541084/93‑1 (MQ=255)
aaCAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGt < 1:3281978/93‑1 (MQ=255)
aaCAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGt > 1:981403/1‑93 (MQ=255)
aCAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTg > 2:3768117/1‑93 (MQ=255)
aCAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTg > 1:1420964/1‑93 (MQ=255)
aCAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTg > 2:3061341/1‑93 (MQ=255)
aaTTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGcc > 1:2188546/1‑93 (MQ=255)
aaTTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGcc < 2:515709/93‑1 (MQ=255)
aTTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCca > 2:181275/1‑93 (MQ=255)
tCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCcagca < 2:2156125/93‑1 (MQ=255)
tCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCcagca < 2:2156126/93‑1 (MQ=255)
tCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCcagca < 2:2652000/93‑1 (MQ=255)
cACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCcagcag < 2:4679984/93‑1 (MQ=255)
cgcgCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGtt < 2:3120611/93‑1 (MQ=255)
aaTGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCt > 1:801760/1‑93 (MQ=255)
aaTGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCt > 1:933326/1‑93 (MQ=255)
aaTGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCt > 1:3728076/1‑93 (MQ=255)
aaTGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCt > 2:1248387/1‑93 (MQ=255)
aTGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTa > 2:1476793/1‑93 (MQ=255)
|
CCTGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTGGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTA > NC_000913/2458177‑2458356
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTGGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACCAT > NC_000913/2458183‑2458363
|
AACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCA < SRR4302544.2365956/94‑1 (MQ=60)
TAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATT > SRR4302544.2394325/1‑94 (MQ=60)
GCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTG < SRR4302544.3228082/94‑1 (MQ=60)
GCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTG < SRR4302544.492733/94‑1 (MQ=60)
GCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTG < SRR4302544.480867/94‑1 (MQ=60)
GCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTA > SRR4302544.2246090/1‑94 (MQ=60)
CAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTAC > SRR4302544.2923401/1‑94 (MQ=60)
AAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACG < SRR4302544.2193671/94‑1 (MQ=60)
GCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGAC < SRR4302544.3292336/94‑1 (MQ=60)
GCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCT < SRR4302544.3445396/94‑1 (MQ=60)
GCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCT < SRR4302544.2987714/94‑1 (MQ=60)
GCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCT > SRR4302544.1573818/1‑94 (MQ=60)
TGACGCTGTAAGCATCGGTATGCACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGGT‑CGTGCTTCAGGCATTTGTACGACCTGACCA > SRR4302544.2923287/1‑94 (MQ=60)
TGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACC > SRR4302544.2893184/1‑94 (MQ=60)
GTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCA > SRR4302544.4425877/1‑94 (MQ=60)
GCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTG > SRR4302544.4653983/1‑94 (MQ=60)
GCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTGCACGCGCAATGTT‑CGGGCTTCAGGCATTTGTACGACCTGACAAAAGACCAGTTG < SRR4302544.2430990/94‑1 (MQ=60)
CATCGGTATGTACATTCATTCCCGTACCGAGAACAATGTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGT < SRR4302544.3400614/94‑1 (MQ=60)
ATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTGGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGT > SRR4302544.4565775/1‑94 (MQ=60)
ATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTT < SRR4302544.1407283/94‑1 (MQ=60)
ATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTT > SRR4302544.4408959/1‑94 (MQ=60)
GGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAA > SRR4302544.2573211/1‑94 (MQ=60)
GGTATGTACACTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAA > SRR4302544.3474681/1‑94 (MQ=60)
ATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCA > SRR4302544.1809445/1‑94 (MQ=60)
ATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCA < SRR4302544.2397753/94‑1 (MQ=60)
ATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCA < SRR4302544.608195/94‑1 (MQ=60)
TACAGTCATTCGCGTGCCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTT < SRR4302544.45069/94‑1 (MQ=60)
ACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTC > SRR4302544.2545005/1‑94 (MQ=60)
ACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGAATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTC < SRR4302544.1495823/94‑1 (MQ=60)
TATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCG < SRR4302544.626605/94‑1 (MQ=60)
CATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCG < SRR4302544.3831795/94‑1 (MQ=60)
CATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCG < SRR4302544.3831794/94‑1 (MQ=60)
ATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGG > SRR4302544.4697772/1‑94 (MQ=60)
TCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCG > SRR4302544.1930756/1‑94 (MQ=60)
ATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGG < SRR4302544.3295970/94‑1 (MQ=60)
ATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGG > SRR4302544.3182886/1‑94 (MQ=60)
TTCCCGTACCGATAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGG < SRR4302544.3054018/94‑1 (MQ=60)
TCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGA < SRR4302544.228617/94‑1 (MQ=60)
TCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGA < SRR4302544.4786764/94‑1 (MQ=60)
CCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAT > SRR4302544.2061947/1‑94 (MQ=60)
CCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAT < SRR4302544.1271795/94‑1 (MQ=60)
CCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAT > SRR4302544.3681844/1‑94 (MQ=60)
CGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCT < SRR4302544.3451147/94‑1 (MQ=60)
GTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTC > SRR4302544.2948327/1‑94 (MQ=60)
GTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTC < SRR4302544.1107205/94‑1 (MQ=60)
GTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTC > SRR4302544.950145/1‑94 (MQ=60)
TACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCG < SRR4302544.1266089/94‑1 (MQ=60)
CCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGCTCTCGCT > SRR4302544.916733/1‑94 (MQ=60)
CCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCT > SRR4302544.916732/1‑94 (MQ=60)
CCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCT < SRR4302544.263329/94‑1 (MQ=60)
CGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGGTCTCGCTG > SRR4302544.4060809/1‑94 (MQ=60)
AGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCG > SRR4302544.3800517/1‑94 (MQ=60)
GAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGT > SRR4302544.991023/1‑94 (MQ=60)
GAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGT > SRR4302544.1979919/1‑94 (MQ=60)
AACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTG > SRR4302544.1435113/1‑94 (MQ=60)
AACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTG < SRR4302544.3313249/94‑1 (MQ=60)
AACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTG < SRR4302544.546414/94‑1 (MQ=60)
CAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCC > SRR4302544.2209227/1‑94 (MQ=60)
CAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCC > SRR4302544.1753214/1‑94 (MQ=60)
CACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGT > SRR4302544.1473804/1‑94 (MQ=60)
GCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCC > SRR4302544.3315827/1‑94 (MQ=60)
CAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCT > SRR4302544.3765144/1‑94 (MQ=60)
CAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCT > SRR4302544.942523/1‑94 (MQ=60)
CAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCT > SRR4302544.809543/1‑94 (MQ=60)
cacggtGGGGCTTCAGGCATTTGTACGACCTGACCAAAGCCCAGTTGTTCAATCACTTCGGCGGTGATCTCGCTGCGTGCCAGCAGTTCGCCTA < SRR4302544.1438135/88‑1 (MQ=60)
GTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCA < SRR4302544.3722562/94‑1 (MQ=60)
TTGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCAC > SRR4302544.217517/1‑94 (MQ=60)
TTGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCAC < SRR4302544.1205083/94‑1 (MQ=60)
TGGGGCTTCAGGCATTTGTACGACCTGACCTAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACC < SRR4302544.2547577/94‑1 (MQ=60)
TGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACC < SRR4302544.173256/94‑1 (MQ=60)
TGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACC < SRR4302544.2547578/94‑1 (MQ=60)
TGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACC > SRR4302544.3720284/1‑94 (MQ=60)
TGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACC > SRR4302544.428408/1‑94 (MQ=60)
GGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACCAT < SRR4302544.1178057/94‑1 (MQ=60)
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AACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTGGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACCAT > NC_000913/2458183‑2458363
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
