Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1475 |
266.7 |
13469680 |
98.2% |
13227225 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,458,272 |
(G)5→4 |
coding (218/1311 nt) |
b2342 ← |
putative acyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,458,268 | 0 | G | . | 99.4%
| 803.1
/ ‑2.2
| 177 | coding (222/1311 nt) | b2342 | putative acyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base . (91/84); total (91/86) |
| Fisher's exact test for biased strand distribution p-value = 4.83e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.73e-01 |
Only 100 of 210 total aligned reads displayed.
GCCTGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTGGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTA > NC_000913/2458176‑2458356
|
gCCTGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTg > 2:4750556/1‑93 (MQ=255)
cttgAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggg > 2:6231161/4‑93 (MQ=255)
cTGGAAACTGGTAGCGCAAGCGCGGCTGAAGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggg < 2:3586676/93‑1 (MQ=255)
tGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTgggg > 1:119185/1‑93 (MQ=255)
gAAACTGTTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggggct < 1:1325859/93‑3 (MQ=255)
gAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggggct > 2:5424990/1‑91 (MQ=255)
gAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggggct < 1:2297576/93‑3 (MQ=255)
aaaCTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggggctt < 2:453969/93‑4 (MQ=255)
aaaCTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggggctt > 1:3071331/1‑90 (MQ=255)
aaaCTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggggctt < 1:4248229/93‑4 (MQ=255)
aaCTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggggcttc > 1:290546/1‑89 (MQ=255)
aaCTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggggcttc > 2:3107617/1‑89 (MQ=255)
aaCTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTggggcttc < 1:4357107/93‑5 (MQ=255)
aCTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCa < 2:4963876/93‑1 (MQ=255)
aCTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCa < 2:40374/93‑1 (MQ=255)
aCTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCa < 2:2013215/93‑1 (MQ=255)
cTGGTAGCTCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAg < 2:2462484/93‑1 (MQ=255)
cTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAg > 2:3172795/1‑93 (MQ=255)
cTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAg > 1:5205459/1‑93 (MQ=255)
ggTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGc > 2:828506/1‑93 (MQ=255)
gTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTGCCTAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCa < 1:6353157/93‑1 (MQ=255)
gTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCa > 2:338674/1‑93 (MQ=255)
aGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCAtt < 2:13032/93‑1 (MQ=255)
cgcAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTg > 1:4161851/1‑93 (MQ=255)
cAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTa < 2:6690884/93‑1 (MQ=255)
acgcgcgcCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTAc < 2:5264832/91‑1 (MQ=255)
aaGCGGGGCTGACTCTGTAAGCATCGGTATGTACTTTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTAc < 2:1647569/93‑1 (MQ=255)
aaGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTAc < 1:1820719/93‑1 (MQ=255)
aGCGCGGCTGACGCTGTAAGCATCGGGATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACg > 2:1697583/1‑93 (MQ=255)
gcgcGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGa > 1:2161479/1‑93 (MQ=255)
cgcgGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGAc < 2:5760450/93‑1 (MQ=255)
cgcgGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGAc < 2:5536299/93‑1 (MQ=255)
gcgGCTGACGCTGTAAGCATCGGTATTTACATTCATTCCCGTACCGAGAACAATTTCTCGCGCAATGTTGGGGG‑TTCAGGCATTTGTACGAcc < 2:794520/93‑1 (MQ=255)
gcgGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGAcc < 1:1022092/93‑1 (MQ=255)
cgGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCt < 2:4147424/93‑1 (MQ=255)
cgGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCt > 2:4167429/1‑93 (MQ=255)
gCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAg < 2:2034057/93‑1 (MQ=255)
gCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAg > 1:3448210/1‑93 (MQ=255)
gCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAg < 1:5119734/93‑1 (MQ=255)
gTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGAcc > 2:5974528/1‑93 (MQ=255)
tAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCa > 2:4933524/1‑93 (MQ=255)
aGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAgt < 1:4935360/93‑1 (MQ=255)
aGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAgt > 1:3928167/1‑93 (MQ=255)
aTCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAgttgt > 1:4520766/1‑93 (MQ=255)
tCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAgttgtt > 2:6140412/1‑93 (MQ=255)
cGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTc < 2:2643938/93‑1 (MQ=255)
cGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTc < 1:1591663/93‑1 (MQ=255)
ggTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCa > 1:3512400/1‑93 (MQ=255)
gTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATG‑TAGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCaa < 1:5414633/93‑1 (MQ=255)
tATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAAt < 1:5800213/93‑1 (MQ=255)
aTGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATc < 1:629488/93‑1 (MQ=255)
aTGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATc > 2:2545738/1‑93 (MQ=255)
aTGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATc < 1:6344536/93‑1 (MQ=255)
tGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCa > 1:4566539/1‑93 (MQ=255)
gTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCAc < 1:6593602/93‑1 (MQ=255)
gTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCAc < 2:6457378/93‑1 (MQ=255)
tACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACt < 1:2439318/93‑1 (MQ=255)
aCATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACtt < 2:1267030/93‑1 (MQ=255)
cattcattCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTc < 2:5621077/93‑1 (MQ=255)
attcattcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTcg < 2:1774279/93‑1 (MQ=255)
attcattcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTcg > 1:800687/1‑93 (MQ=255)
ttcattcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTcgg > 1:4893502/1‑93 (MQ=255)
ttcattcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTcgg < 2:2191187/93‑1 (MQ=255)
tcattcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTcggc > 2:4428706/1‑93 (MQ=255)
ttcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCggg > 1:4436685/1‑93 (MQ=255)
tcCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCgggg < 2:3849658/93‑1 (MQ=255)
cccGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGa < 1:2659124/93‑1 (MQ=255)
cccGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGa < 2:4245209/93‑1 (MQ=255)
cGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAtc < 1:3590346/93‑1 (MQ=255)
cGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAtc > 1:4673596/1‑93 (MQ=255)
gTACCGAGAACAATTTCACGCGCAATGTT‑TGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGGTGTTCAATCACTTCGGCGGGGAtct > 1:4051723/1‑93 (MQ=255)
gTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAtct > 1:3277473/1‑93 (MQ=255)
gTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAtct < 2:5458081/93‑1 (MQ=255)
tACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAtctc > 1:4188045/1‑93 (MQ=255)
tACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAtctc > 1:6730408/1‑93 (MQ=255)
aCCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCg > 2:1965461/1‑93 (MQ=255)
ccGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGc > 1:5854727/1‑93 (MQ=255)
ccGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGc > 1:957833/1‑93 (MQ=255)
cGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCt < 2:5213948/93‑1 (MQ=255)
gagaACAATATCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTg > 2:6619017/1‑93 (MQ=255)
agaACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGc > 2:5880835/1‑93 (MQ=255)
ggaCAATTTCACGCTC‑ATGGTTGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCgcggcg < 1:5611377/91‑1 (MQ=255)
aCAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGAGCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTg > 2:4684709/1‑93 (MQ=255)
aaTTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGcc > 1:5505390/1‑93 (MQ=255)
aaTTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGcc < 1:6117898/93‑1 (MQ=255)
aaTTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGcc < 1:1253061/93‑1 (MQ=255)
aaTTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGcc < 2:6051988/93‑1 (MQ=255)
tCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCcagca < 2:4250881/93‑1 (MQ=255)
aCGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGt < 1:2725685/93‑1 (MQ=255)
cgcgCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGtt < 2:1667292/93‑1 (MQ=255)
cgcgCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGtt < 1:6164242/93‑1 (MQ=255)
gcgcAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTc < 2:2966249/93‑1 (MQ=255)
gcgcAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTc < 2:5134823/93‑1 (MQ=255)
gcAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGc > 2:4332404/1‑93 (MQ=255)
gcAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGc > 2:3701953/1‑93 (MQ=255)
cAATGTT‑GGGGCTTCAGTCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGcc < 1:6429249/93‑1 (MQ=255)
aaTGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCt > 1:698579/1‑93 (MQ=255)
aaTGTT‑GGGGCTTCAGGCAATTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCt > 1:6517533/1‑93 (MQ=255)
aTGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTa > 1:82290/1‑93 (MQ=255)
aTGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTa > 1:1917156/1‑93 (MQ=255)
|
GCCTGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTGGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTA > NC_000913/2458176‑2458356
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTGGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACCATCT > NC_000913/2458179‑2458365
|
TGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCCATGTTGGGGC > SRR4302536.902577/1‑94 (MQ=60)
GAAACTGTTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTT < SRR4302536.1365427/94‑1 (MQ=60)
GAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTT < SRR4302536.3667116/94‑1 (MQ=60)
GAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTT > SRR4302536.3161313/1‑94 (MQ=60)
GAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTT < SRR4302536.784843/94‑1 (MQ=60)
GAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTT < SRR4302536.2459423/94‑1 (MQ=60)
GAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTT < SRR4302536.2367297/94‑1 (MQ=60)
AAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTC > SRR4302536.298270/1‑94 (MQ=60)
AAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTC < SRR4302536.4374770/94‑1 (MQ=60)
AGCTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCA < SRR4302536.3478285/94‑1 (MQ=60)
AACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCA < SRR4302536.4487403/94‑1 (MQ=60)
AACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCA > SRR4302536.2543295/1‑94 (MQ=60)
ACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAG > SRR4302536.5360625/1‑94 (MQ=60)
ACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAG < SRR4302536.5769713/94‑1 (MQ=60)
CTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGG < SRR4302536.4854599/94‑1 (MQ=60)
GTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTGCCTAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCAT < SRR4302536.6542407/94‑1 (MQ=60)
GTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCAT < SRR4302536.6542405/94‑1 (MQ=60)
AGCGCAAGCGCGTCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTT < SRR4302536.2851672/94‑1 (MQ=60)
AGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTT > SRR4302536.4064791/1‑94 (MQ=60)
GCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTG < SRR4302536.3069176/94‑1 (MQ=60)
GCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTG > SRR4302536.4285468/1‑94 (MQ=60)
CAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTAC < SRR4302536.4552337/94‑1 (MQ=60)
CAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTAC > SRR4302536.6258334/1‑94 (MQ=60)
CAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTAC > SRR4302536.1927728/1‑94 (MQ=60)
AAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACG < SRR4302536.1875645/94‑1 (MQ=60)
AAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACG > SRR4302536.6330176/1‑94 (MQ=60)
AAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACG > SRR4302536.5953177/1‑94 (MQ=60)
AGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGA > SRR4302536.2226496/1‑94 (MQ=60)
GCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCT < SRR4302536.1052357/94‑1 (MQ=60)
CGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTG < SRR4302536.4661161/94‑1 (MQ=60)
ACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCcca > SRR4302536.2366049/1‑91 (MQ=60)
CGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAG > SRR4302536.3550906/1‑94 (MQ=60)
CGCTGTAAGCATCGGTATGTACATTCATACCCGTACCGAGAACAATTTCACGAGCAATGTT‑GGGGCTTCAGGCATTTGTACGTCCCGACCAAAG < SRR4302536.6803137/94‑1 (MQ=60)
GCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGA < SRR4302536.5272711/94‑1 (MQ=60)
TAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCACTTGTACGAACTGACAAAAGACCAG > SRR4302536.1087014/1‑94 (MQ=60)
AAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCCTTTGTACGACCTGACCAAAGCCCAGT > SRR4302536.844474/1‑94 (MQ=60)
AAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGT > SRR4302536.4044882/1‑94 (MQ=60)
AGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTT < SRR4302536.5083647/94‑1 (MQ=60)
CATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGT > SRR4302536.4656339/1‑94 (MQ=60)
CATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGT > SRR4302536.2743277/1‑94 (MQ=60)
ATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTT < SRR4302536.5177310/94‑1 (MQ=60)
ATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTT < SRR4302536.5080614/94‑1 (MQ=60)
TCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTC < SRR4302536.6481546/94‑1 (MQ=60)
CGGTATGTACATTCATTCCCGTGCCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCA > SRR4302536.4366143/1‑94 (MQ=60)
CGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCA > SRR4302536.3617273/1‑94 (MQ=60)
CGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCA < SRR4302536.1638202/94‑1 (MQ=60)
CGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCA > SRR4302536.6556284/1‑94 (MQ=60)
GTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAAT > SRR4302536.699827/1‑94 (MQ=60)
GTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATG‑TAGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAAT < SRR4302536.5576454/94‑1 (MQ=60)
TATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATC < SRR4302536.651949/94‑1 (MQ=60)
TATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATC < SRR4302536.5972915/94‑1 (MQ=60)
ATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCA < SRR4302536.6533549/94‑1 (MQ=60)
ATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCA < SRR4302536.648141/94‑1 (MQ=60)
ATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCA > SRR4302536.4703560/1‑94 (MQ=60)
ATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCA < SRR4302536.4272695/94‑1 (MQ=60)
GTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACT < SRR4302536.6789745/94‑1 (MQ=60)
TACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTT > SRR4302536.4290275/1‑94 (MQ=60)
TACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTT < SRR4302536.2513044/94‑1 (MQ=60)
ACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑AGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTC > SRR4302536.5598508/1‑94 (MQ=60)
CATTCATTCCCGTACCGAGAAGAATTTCACGCGCAATGTTGGGGG‑TTGAGGCATTTGTACGACCTTACCAAAGATCAGATGTTCAATCACTTCG > SRR4302536.4007518/1‑94 (MQ=60)
CATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCG < SRR4302536.4616848/94‑1 (MQ=60)
CATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCG > SRR4302536.824165/1‑94 (MQ=60)
ATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGG > SRR4302536.5040688/1‑94 (MQ=60)
ATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGG < SRR4302536.517222/94‑1 (MQ=60)
ATTCATTCCCGTACAGAGAACAATTTCACGGGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCTTTTCGG < SRR4302536.4083430/94‑1 (MQ=60)
TCATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGTCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCG < SRR4302536.3778018/94‑1 (MQ=60)
ATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGG > SRR4302536.4569819/1‑94 (MQ=60)
ATTCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGCACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGG < SRR4302536.5378745/94‑1 (MQ=60)
TCCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGA > SRR4302536.2162425/1‑94 (MQ=60)
CCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAT > SRR4302536.166248/1‑94 (MQ=60)
CCCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGAT < SRR4302536.2738717/94‑1 (MQ=60)
CCGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATC > SRR4302536.4814140/1‑94 (MQ=60)
CGTACCGAGAACAATTTCACGCGCAATGTT‑TGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGGTGTTCAATCACTTCGGCGGGGATCT > SRR4302536.4171844/1‑94 (MQ=60)
CGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCT > SRR4302536.3373800/1‑94 (MQ=60)
CGTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCT < SRR4302536.3697739/94‑1 (MQ=60)
GTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTC > SRR4302536.4312492/1‑94 (MQ=60)
GTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTC > SRR4302536.6930460/1‑94 (MQ=60)
GTACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTC > SRR4302536.254040/1‑94 (MQ=60)
TACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCG < SRR4302536.3790893/94‑1 (MQ=60)
ACCGAGAACAATTTCACGTGCAATGTT‑GGGGCTTCAGGTAGTTTTGCGACCTGACCAAAGAATAGTTGTTCAATCACTTCGGCttctaaaacga > SRR4302536.4373694/1‑83 (MQ=39)
ACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGC > SRR4302536.6007303/1‑94 (MQ=60)
ACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGC > SRR4302536.986140/1‑94 (MQ=60)
ACCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGC > SRR4302536.6029166/1‑94 (MQ=60)
CCGAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCT > SRR4302536.3590809/1‑94 (MQ=60)
GAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGG > SRR4302536.3462740/1‑94 (MQ=60)
GAGAACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGC > SRR4302536.1236770/1‑94 (MQ=60)
ggacaatttcacgctcatggttGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCGGCGT < SRR4302536.5778080/72‑1 (MQ=60)
AACAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTG < SRR4302536.6735494/94‑1 (MQ=60)
CAATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCC > SRR4302536.5669629/1‑94 (MQ=60)
AATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCA < SRR4302536.1290677/94‑1 (MQ=60)
AATTTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCA < SRR4302536.6300244/94‑1 (MQ=60)
TTCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCA > SRR4302536.1384828/1‑94 (MQ=60)
TCACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAG < SRR4302536.6692971/94‑1 (MQ=60)
ACGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTT < SRR4302536.2806955/94‑1 (MQ=60)
CGCGCAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTC < SRR4302536.6347861/94‑1 (MQ=60)
CAATGTT‑GGGGCTTCAGTCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCT < SRR4302536.6621404/94‑1 (MQ=60)
CAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCT < SRR4302536.6528981/94‑1 (MQ=60)
CAATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCT > SRR4302536.718984/1‑94 (MQ=60)
CAATGTT‑GGGGCTTCAGGCAATTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCT > SRR4302536.6711709/1‑94 (MQ=60)
AATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGGAGTTCGCCTA < SRR4302536.3262550/94‑1 (MQ=60)
AATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTA > SRR4302536.84493/1‑94 (MQ=60)
AATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTA > SRR4302536.529585/1‑94 (MQ=60)
AATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTA > SRR4302536.4424806/1‑94 (MQ=60)
AATGTT‑GGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTA > SRR4302536.1974837/1‑94 (MQ=60)
TGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACC < SRR4302536.344639/94‑1 (MQ=60)
GCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACCATCT > SRR4302536.958129/1‑94 (MQ=60)
|
TGGAAACTGGTAGCGCAAGCGCGGCTGACGCTGTAAGCATCGGTATGTACATTCATTCCCGTACCGAGAACAATTTCACGCGCAATGTTGGGGGCTTCAGGCATTTGTACGACCTGACCAAAGACCAGTTGTTCAATCACTTCGGCGGGGATCTCGCTGCGTGCCAGCAGTTCGCCTACCACCATCT > NC_000913/2458179‑2458365
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
