Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,405,469 |
T→C |
W76R (TGG→CGG) |
b3258 → |
sodium/pantothenate symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,405,469 | 0 | T | C | 98.8%
| 249.7
/ NA
| 81 | W76R (TGG→CGG) | b3258 | sodium/pantothenate symporter |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (30/49); total (31/50) |
| Fisher's exact test for biased strand distribution p-value = 3.87e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 107 total aligned reads displayed.
ATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCT > NC_000913/3405379‑3405556
|
aTTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGgc‑tgggccgg < 1:2523848/93‑1 (MQ=255)
gCTGGCGATGACGCTCCCCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTAtt < 2:855599/93‑1 (MQ=255)
gCTGGCGATGACGCTCACCGCGACCTATATCAGTTCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTAtt < 1:707727/93‑1 (MQ=255)
cTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTg < 2:2427864/93‑1 (MQ=255)
tGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGc < 2:3841485/93‑1 (MQ=255)
tGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGc < 1:1001856/93‑1 (MQ=255)
ggCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGGCAGGAGCTGCTTATTAATACGGGC‑TGGGGCGGGGATTGCt > 2:951427/1‑93 (MQ=255)
ggCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATTAATACGGGC‑TGGGGCGGGGATTGCt > 2:3013123/1‑93 (MQ=255)
ggCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCt < 2:1619229/93‑1 (MQ=255)
ggCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCt < 1:307169/93‑1 (MQ=255)
gCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTg < 2:833330/93‑1 (MQ=255)
gCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTg < 2:1125717/93‑1 (MQ=255)
gATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGGCCGGGATTGGTGGc > 2:227918/1‑93 (MQ=255)
gATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGc < 2:3221940/93‑1 (MQ=255)
aTGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTTGCg > 1:1283997/1‑93 (MQ=255)
aTGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTGGCg > 2:1422357/1‑93 (MQ=255)
tGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCga < 2:754940/93‑1 (MQ=255)
gACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCgag > 1:3916284/1‑92 (MQ=255)
gACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATAAGGGC‑TGGGCCGGGTGTTGCTGGCgag > 1:4663231/1‑92 (MQ=255)
cGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCCGGAGCTGCTTATTAATACGGGC‑TGGGCCGGGGATTTCTGGCggtgt > 2:913331/1‑92 (MQ=255)
gCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCgatgat < 2:2868973/93‑1 (MQ=255)
gCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCgatgat < 2:3800823/93‑1 (MQ=255)
ccTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCgatgat < 2:3800826/92‑1 (MQ=255)
cTCCCCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGAtt < 2:4017387/93‑1 (MQ=255)
cACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCa < 2:4244984/93‑1 (MQ=255)
aCCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCTGGGTATTGGTGGCGATGATTCAg > 1:3106782/1‑93 (MQ=255)
cgcgACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCt < 2:1509427/93‑1 (MQ=255)
gcgACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTGGCGATGATTCAGCtt > 2:2402069/1‑93 (MQ=255)
cTATATCAGTGCCAGTTCGTTTATCGGCGGTCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGc < 2:4197849/93‑1 (MQ=255)
cTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGGCGGGGATTGCTGGCGATGATTCAGGTTCCTGc > 1:309567/1‑93 (MQ=255)
cTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGc < 2:2387650/93‑1 (MQ=255)
cTATATCAGTGCCAGTTCGTTTATCGGCGGCCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGc < 1:1853926/93‑1 (MQ=255)
tataTCAGTGCCAGTTCGTTTATCGGCGGGCCAGGGGCTGCTTATAAATACGGGC‑TGGGGCGGGTATTGATCGCGATGGTTTAGCTTACTGCa > 1:2314010/1‑93 (MQ=255)
tataTCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTTGGGCCGGG‑CTTGCTGGGGATGATTCAGCTTTCTTCa > 2:3074272/1‑93 (MQ=255)
tataTCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTggc > 1:319322/1‑91 (MQ=255)
tataTCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTGGCGGTGATTTAGCTTCCTGCa > 2:3532608/1‑93 (MQ=255)
atatCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGGCGGGGATTGCTGGCGATGGTTCAGCTTCCTGCAg > 1:635924/1‑93 (MQ=255)
atatCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTGGCGATGATTCAGCTTTCTGCAg > 1:4706670/1‑93 (MQ=255)
tatCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGt < 1:4376306/93‑1 (MQ=255)
tatCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGt > 1:4513162/1‑93 (MQ=255)
tCAGTGCCAGTTCGTTTATCGGCGGGCCAGGGGGTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTGGCGATGATTCAGCTTCCCGCAGTCt > 1:302092/1‑93 (MQ=255)
tCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTGGCGATGATTCAGATTCCTGCAGTCt > 2:2187291/1‑93 (MQ=255)
aGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTgg < 1:3522251/93‑1 (MQ=255)
aGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTgg < 1:1237386/93‑1 (MQ=255)
gCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCtt < 2:3975112/93‑1 (MQ=255)
gCCAGTTCGTTTATCGGCGGGCCAGGAGCGGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCtt < 2:3975111/93‑1 (MQ=255)
cAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTc < 2:271564/93‑1 (MQ=255)
aGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCa < 2:1284697/93‑1 (MQ=255)
aGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTGGCGATGATTCAGCTTTCTGCAGTCTGGCCTTCa > 2:1117888/1‑93 (MQ=255)
gTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTGGCGATGATTTAGCTTCCTGCAGTCTGGCTTTCAc > 1:2777985/1‑93 (MQ=255)
ttCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTGGCGATGATTCAGCTTCCTGCCGTCTGGCTTTCACt > 1:2056486/1‑93 (MQ=255)
tCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTc < 2:2027234/93‑1 (MQ=255)
tCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTc < 2:2050368/93‑1 (MQ=255)
tttATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTTACTCGGt > 2:4235322/1‑93 (MQ=255)
ttATCGGCGGGGCAGGAGCTGCTTATAAATACGGGC‑TGGGGCGGGTATTGCTGGCGGTGACTCAGCTTGCTGCAGTCGTGGTTTTACTCgggt > 2:2234911/1‑91 (MQ=255)
ttATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTa < 2:3783500/93‑1 (MQ=255)
tATCGGCGGGCCAGGAGCTGCTTATAAATTCCGGC‑TGGGCCGGGGATTGCTTGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCgggct > 2:2636359/1‑90 (MQ=255)
tCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATtc > 2:1613362/1‑93 (MQ=255)
tCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATtc > 1:4399810/1‑93 (MQ=255)
tCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATtc < 2:3081403/93‑1 (MQ=255)
tCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGGATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATtc > 2:4324472/1‑93 (MQ=255)
cggcggGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATtct < 2:3687643/93‑1 (MQ=255)
ggcggGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATtctc < 2:4428931/93‑1 (MQ=255)
gcggGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCg > 1:555608/1‑93 (MQ=255)
cggGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCgg > 1:3133259/1‑93 (MQ=255)
cggGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCgg < 2:1030681/93‑1 (MQ=255)
gCCAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCaa < 1:1838271/93‑1 (MQ=255)
ccAGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCaag > 1:3000312/1‑93 (MQ=255)
aGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTGCTGCAGTCTGGCTTTCAGTCGGTATTCTCGGgaagaa > 1:1947939/1‑93 (MQ=255)
aGGAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCaagaa > 2:3669200/1‑93 (MQ=255)
ggAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCaagaag > 2:4078399/1‑93 (MQ=255)
ggAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCaagaag > 1:1206522/1‑93 (MQ=255)
ggAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCaagaag > 2:2687805/1‑93 (MQ=255)
ggAGCTGCTTATAAATACGGGC‑TGGGCCCGGGATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCaagaag > 2:4078400/1‑93 (MQ=255)
gAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGt > 2:685399/1‑93 (MQ=255)
gAGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGt < 2:1721723/93‑1 (MQ=255)
aGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGtt < 1:277763/93‑1 (MQ=255)
aGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGtt > 1:753397/1‑93 (MQ=255)
aGCTGCTTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGtt < 2:739121/93‑1 (MQ=255)
aGCTGCTTATAAATACGGGC‑TGGCGCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGtt < 2:3390121/93‑1 (MQ=255)
gctgctTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGttt < 1:800359/93‑1 (MQ=255)
tgctTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGc < 1:1807518/93‑1 (MQ=255)
gctTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCg > 2:4318680/1‑93 (MQ=255)
gctTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCg > 1:803498/1‑93 (MQ=255)
ctTATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGGAAGAAGTTTGCGa > 1:751904/1‑93 (MQ=255)
ttATAAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGAt > 1:138054/1‑93 (MQ=255)
tataAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGAtt > 2:3333806/1‑93 (MQ=255)
ataAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTc < 1:526154/93‑1 (MQ=255)
taAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCt < 1:2493514/93‑1 (MQ=255)
taAATACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCt < 1:944444/93‑1 (MQ=255)
taAAGACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCt < 2:2754480/93‑1 (MQ=255)
aaaTACGGGC‑TGGGCGGGGTATTGCTGGCGATTATTCAGCTTCCGGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCtt < 1:3288468/93‑1 (MQ=255)
aaaTACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCtt < 2:1247256/93‑1 (MQ=255)
aaTACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTg > 2:368642/1‑93 (MQ=255)
aTACGGGC‑TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTgc < 2:4556082/93‑1 (MQ=255)
gggc‑tgggccGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTgcgcgc > 2:1308619/1‑93 (MQ=255)
gggc‑tgggccGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTgcgcgc < 2:2499862/93‑1 (MQ=255)
ggc‑tgggccgGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGcgcc < 2:3413770/93‑1 (MQ=255)
tgggccgggTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCt < 2:1429836/93‑1 (MQ=255)
tgggccgggTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCt < 1:433620/93‑1 (MQ=255)
|
ATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGC‑TGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCT > NC_000913/3405379‑3405556
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCTACAATG > NC_000913/3405377‑3405562
|
GTATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCG < SRR4302544.4075657/94‑1 (MQ=60)
GTATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCG > SRR4302544.3354626/1‑94 (MQ=60)
ATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGG < SRR4302544.2548100/94‑1 (MQ=60)
GCTGGCGATGACGCTCACCGCGACCTATATCAGTTCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTG < SRR4302544.714755/94‑1 (MQ=60)
TGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCT < SRR4302544.1011793/94‑1 (MQ=60)
GGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTG < SRR4302544.310353/94‑1 (MQ=60)
GGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTG < SRR4302544.4676541/94‑1 (MQ=60)
GATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGGATTGCTTGCG > SRR4302544.1296645/1‑94 (MQ=60)
TGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGAG > SRR4302544.3955183/1‑94 (MQ=60)
TGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATAAGGGCTGGGCCGGGTGTTGCTGGCGAG > SRR4302544.4709357/1‑94 (MQ=60)
CACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGGTGGCGATGATTCAG > SRR4302544.3136355/1‑94 (MQ=60)
CCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGGCGGGGATTGCTGGCGATGATTCAGGTTCCTGC > SRR4302544.312788/1‑94 (MQ=60)
CTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGGGCTGCTTATAAATACGGGCTGGGGCGGGTATTGATCGCGATGGTTTAGCTTACTGCA > SRR4302544.2335906/1‑94 (MQ=60)
CTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGgc > SRR4302544.322642/1‑92 (MQ=60)
CTATATCAGTGCCAGTTCGTTTATCGGCGGCCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCA < SRR4302544.1871858/94‑1 (MQ=60)
TATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGGCGGGGATTGCTGGCGATGGTTCAGCTTCCTGCAG > SRR4302544.642193/1‑94 (MQ=60)
TATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGGATTGCTGGCGATGATTCAGCTTTCTGCAG > SRR4302544.4753177/1‑94 (MQ=60)
ATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGT > SRR4302544.4558379/1‑94 (MQ=60)
TATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTC < SRR4302544.4420663/94‑1 (MQ=60)
ATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGGGGTGCTTATAAATACGGGCTGGGCCGGGGATTGCTGGCGATGATTCAGCTTCCCGCAGTCT > SRR4302544.305221/1‑94 (MQ=60)
AGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGC < SRR4302544.1249615/94‑1 (MQ=60)
AGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGC < SRR4302544.3555900/94‑1 (MQ=60)
AGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGGATTGCTGGCGATGATTTAGCTTCCTGCAGTCTGGCTTTCAC > SRR4302544.2804707/1‑94 (MQ=60)
GTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGGATTGCTGGCGATGATTCAGCTTCCTGCCGTCTGGCTTTCACT > SRR4302544.2076270/1‑94 (MQ=60)
ATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTC > SRR4302544.4444278/1‑94 (MQ=60)
GGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCG > SRR4302544.561047/1‑94 (MQ=60)
GCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGG > SRR4302544.3163024/1‑94 (MQ=60)
GCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAG > SRR4302544.3029073/1‑94 (MQ=60)
GCCAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAG < SRR4302544.1856111/94‑1 (MQ=60)
CAGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTGCTGCAGTCTGGCTTTCAGTCGGTATTCTCGGGAAGAA > SRR4302544.1966807/1‑94 (MQ=60)
AGGAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAG > SRR4302544.1218472/1‑94 (MQ=60)
GAGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTT > SRR4302544.760754/1‑94 (MQ=60)
AGCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTT < SRR4302544.280664/94‑1 (MQ=60)
GCTGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTG < SRR4302544.808124/94‑1 (MQ=60)
TGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCG < SRR4302544.1825186/94‑1 (MQ=60)
TGCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCG > SRR4302544.811321/1‑94 (MQ=60)
GCTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGGAAGAAGTTTGCGA > SRR4302544.759245/1‑94 (MQ=60)
CTTATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGAT > SRR4302544.139359/1‑94 (MQ=60)
ATAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCT < SRR4302544.531361/94‑1 (MQ=60)
TAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTT < SRR4302544.953746/94‑1 (MQ=60)
TAAATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTT < SRR4302544.2517406/94‑1 (MQ=60)
AAATACGGGCTGGGCGGGGTATTGCTGGCGATTATTCAGCTTCCGGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTG < SRR4302544.3319802/94‑1 (MQ=60)
ATACGGGCTGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCG < SRR4302544.2868106/94‑1 (MQ=60)
TGGGCCGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCTA < SRR4302544.437996/94‑1 (MQ=60)
CGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCTACAATG > SRR4302544.363490/1‑94 (MQ=60)
CGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCTACAATG > SRR4302544.3019804/1‑94 (MQ=60)
CGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCTACAATG > SRR4302544.1060670/1‑94 (MQ=60)
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GTATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCTACAATG > NC_000913/3405377‑3405562
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
