Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,430,453 |
+C |
coding (745/747 nt) |
smf ← |
putative Rossmann‑fold nucleotide‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,430,453 | 1 | . | C | 98.4%
| 396.0
/ ‑1.5
| 124 | coding (745/747 nt) | smf | putative Rossmann‑fold nucleotide‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base C (62/60); total (62/62) |
| Fisher's exact test for biased strand distribution p-value = 4.96e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 138 total aligned reads displayed.
GAATTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑G‑AAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTT > NC_000913/3430361‑3430539
|
gAATTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑g > 1:2780068/1‑93 (MQ=255)
aTTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑gca < 2:3504649/93‑3 (MQ=255)
aTTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑gca > 1:3966927/1‑91 (MQ=255)
aTTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTCAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑gca > 2:2923470/1‑91 (MQ=255)
ttcttcCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑G‑caaa > 1:214472/1‑93 (MQ=255)
ttcCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑c < 2:4283021/93‑1 (MQ=255)
cGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTtc < 1:4356175/93‑1 (MQ=255)
cGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTtc < 1:3911896/93‑1 (MQ=255)
ggTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTtct < 2:254787/93‑1 (MQ=255)
ggTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTtct < 1:3527791/93‑1 (MQ=255)
ggTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTtct < 2:2153700/93‑1 (MQ=255)
ggTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTtct < 1:3773427/93‑1 (MQ=255)
ggTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTtct < 1:3015647/93‑1 (MQ=255)
gTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTtctc < 2:4524777/93‑1 (MQ=255)
gTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTtctc > 1:4429944/1‑93 (MQ=255)
tCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGc > 2:3885790/1‑93 (MQ=255)
ccGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGcc > 1:881900/1‑93 (MQ=255)
cGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGccc > 1:920702/1‑93 (MQ=255)
cGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGccc > 1:328689/1‑93 (MQ=255)
cGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGccc < 1:642950/93‑1 (MQ=255)
gTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGcccc > 2:2196187/1‑93 (MQ=255)
acaAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGc > 1:672368/1‑93 (MQ=255)
caAGAATCGCACCTTGTTTTATTAACCAGTGAGTTCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTATCGCCCCTGCt > 1:2955490/1‑93 (MQ=255)
caAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCt < 2:1222313/93‑1 (MQ=255)
gAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCaa > 2:3018811/1‑93 (MQ=255)
gAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCaa < 1:1245961/93‑1 (MQ=255)
aTCGCACCTTTTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGAACTGGGAAGAC‑AAAAA‑ATTCTCGCCCCGTCTCAAgc > 2:973566/1‑93 (MQ=255)
aTCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAgc > 1:3341161/1‑93 (MQ=255)
aTCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAgc < 2:986931/93‑1 (MQ=255)
gCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTTGACCTGGCAAG‑GCAAAAA‑CATCTCGCCCCTGCTCAAGCGca > 2:810801/1‑93 (MQ=255)
gCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGca < 1:792700/93‑1 (MQ=255)
gCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGca > 1:2817121/1‑93 (MQ=255)
aCCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGcaca > 2:1373746/1‑93 (MQ=255)
cTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAAc > 2:3951722/1‑93 (MQ=255)
cTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAAc > 2:2350695/1‑93 (MQ=255)
ttGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACg > 2:1493298/1‑93 (MQ=255)
ttGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACg < 1:323032/93‑1 (MQ=255)
tGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCACCTGCTCAAGCGCACAACGt < 2:4276109/93‑1 (MQ=255)
gTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTg > 2:3691304/1‑93 (MQ=255)
ttttATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGc < 1:4090244/93‑1 (MQ=255)
ttttATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGc < 2:4538179/93‑1 (MQ=255)
ttttATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGc < 2:503236/93‑1 (MQ=255)
tattaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGt < 2:3809652/93‑1 (MQ=255)
attaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTc < 2:4495975/93‑1 (MQ=255)
attaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTc < 1:1130775/93‑1 (MQ=255)
ttaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCa < 2:1090692/93‑1 (MQ=255)
aaCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAcc > 1:2215124/1‑93 (MQ=255)
aCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCa > 2:505031/1‑93 (MQ=255)
aCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCa > 1:3919864/1‑93 (MQ=255)
ccAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAg < 2:2381857/93‑1 (MQ=255)
aGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCg > 2:1874118/1‑93 (MQ=255)
gTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGa < 1:3667438/93‑1 (MQ=255)
gTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGa > 2:3741970/1‑93 (MQ=255)
tGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGaa < 2:4623999/93‑1 (MQ=255)
aGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAAcc < 1:1380886/93‑1 (MQ=255)
aGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAAcc < 1:4048435/93‑1 (MQ=255)
gCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCAc < 1:1445778/93‑1 (MQ=255)
gCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCAc > 1:2093903/1‑93 (MQ=255)
ccTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTa > 1:776109/1‑93 (MQ=255)
cTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTAc > 2:4405940/1‑93 (MQ=255)
cTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTAc > 2:2102998/1‑93 (MQ=255)
cTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTAc < 2:656649/93‑1 (MQ=255)
cTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTAc > 2:832461/1‑93 (MQ=255)
ttCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACg > 1:2283864/1‑93 (MQ=255)
ttCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACg > 2:2174166/1‑93 (MQ=255)
gCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCaa > 2:2176491/1‑93 (MQ=255)
gCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCaa > 2:2148461/1‑93 (MQ=255)
gCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCaa > 1:4026701/1‑93 (MQ=255)
cTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCaaa < 2:2226671/93‑1 (MQ=255)
tCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGc < 1:3563827/93‑1 (MQ=255)
tCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGc < 1:3952610/93‑1 (MQ=255)
tCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGc > 1:2095517/1‑93 (MQ=255)
tCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGc > 1:438412/1‑93 (MQ=255)
tCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACATGCTGTCACCAGCGAACCACTATGCAAAGc > 1:2095518/1‑93 (MQ=255)
tCCCGGATTCCCTATTGGACCTGGCAAG‑G‑AAAAATCTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGc < 2:3358988/93‑1 (MQ=255)
cccGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGcc < 2:628019/93‑1 (MQ=255)
cccGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGcc < 2:3632814/93‑1 (MQ=255)
ccGGATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCg > 1:3862523/1‑93 (MQ=255)
gATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCtt > 1:1016749/1‑93 (MQ=255)
gATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCtt > 2:3717802/1‑93 (MQ=255)
gATTCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCtt > 1:3660793/1‑93 (MQ=255)
cttCCCTCTTGGACCTGGCAAGCC‑AAGAC‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCGGCGGACCACTACGCAAAGCCGCTTc < 2:4212730/92‑1 (MQ=255)
ttCCCTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTcc < 2:3126403/93‑1 (MQ=255)
ccTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTccacc < 1:3094530/93‑1 (MQ=255)
ccTATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTccacc > 1:87426/1‑93 (MQ=255)
tATTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTccaccac > 1:3420034/1‑93 (MQ=255)
aTTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTccaccacc < 1:1442991/93‑1 (MQ=255)
aTTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTccaccacc < 1:3718090/93‑1 (MQ=255)
aTTGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTccaccacc < 1:3718089/93‑1 (MQ=255)
ttGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTccaccacca < 1:1977034/93‑1 (MQ=255)
ttGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTccaccacca > 1:4553305/1‑93 (MQ=255)
ttGGACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTccaccacca < 1:195345/93‑1 (MQ=255)
ggACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGt < 2:1619777/93‑1 (MQ=255)
ggACCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGt > 1:3469617/1‑93 (MQ=255)
aCCTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTac < 2:737513/93‑1 (MQ=255)
ccTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTaca < 1:2932023/93‑1 (MQ=255)
cTGGCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTacac < 2:4427958/93‑1 (MQ=255)
cggcaag‑gcaaAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACAcc < 2:3749520/92‑1 (MQ=255)
ggcaag‑gcaaAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCt > 1:644198/1‑93 (MQ=255)
gCAAG‑GCAAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCtt < 1:4629005/93‑1 (MQ=255)
|
GAATTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑G‑AAAAA‑CTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTT > NC_000913/3430361‑3430539
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAATTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGG‑AAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAG > NC_000913/3430360‑3430546
|
AGAATTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGG > SRR4302544.2806816/1‑94 (MQ=60)
AGAATTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGG < SRR4302544.1822354/94‑1 (MQ=60)
AATTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGG‑CA > SRR4302544.4006387/1‑94 (MQ=60)
ATTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGACCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGG‑CAA > SRR4302544.4199468/1‑94 (MQ=60)
TTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGG‑CAAA > SRR4302544.216674/1‑94 (MQ=60)
CTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAAC > SRR4302544.3664031/1‑94 (MQ=60)
CGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCT < SRR4302544.3950755/94‑1 (MQ=60)
CGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCT < SRR4302544.4400404/94‑1 (MQ=60)
GGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTC < SRR4302544.3561509/94‑1 (MQ=60)
GGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTC < SRR4302544.3044556/94‑1 (MQ=60)
GGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTC > SRR4302544.4474642/1‑94 (MQ=60)
GGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTC < SRR4302544.3810825/94‑1 (MQ=60)
GTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCG < SRR4302544.4036791/94‑1 (MQ=60)
GTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCG < SRR4302544.747506/94‑1 (MQ=60)
TCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCC > SRR4302544.890640/1‑94 (MQ=60)
CCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCC > SRR4302544.332106/1‑94 (MQ=60)
CCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCC > SRR4302544.929784/1‑94 (MQ=60)
CGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCC < SRR4302544.649301/94‑1 (MQ=60)
TCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTG < SRR4302544.29118/94‑1 (MQ=60)
CACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGC > SRR4302544.679009/1‑94 (MQ=60)
ACAAGAATCGCACCTTGTTTTATTAACCAGTGAGTTCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTATCGCCCCTGCT > SRR4302544.2983872/1‑94 (MQ=60)
CAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGTATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTC > SRR4302544.2120562/1‑94 (MQ=60)
GAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAG < SRR4302544.1258238/94‑1 (MQ=60)
AATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGC > SRR4302544.3373014/1‑94 (MQ=60)
CGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCA > SRR4302544.2844318/1‑94 (MQ=60)
GCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCAC < SRR4302544.800374/94‑1 (MQ=60)
ACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAA > SRR4302544.1323065/1‑94 (MQ=60)
CCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAAC > SRR4302544.3732677/1‑94 (MQ=60)
CTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACG > SRR4302544.3367477/1‑94 (MQ=60)
TTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGT < SRR4302544.2032840/94‑1 (MQ=60)
TTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGT < SRR4302544.326388/94‑1 (MQ=60)
TTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCT < SRR4302544.4130925/94‑1 (MQ=60)
TTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGT > SRR4302544.2377694/1‑94 (MQ=60)
TTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGT > SRR4302544.859428/1‑94 (MQ=60)
ATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCA < SRR4302544.1142040/94‑1 (MQ=60)
ATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCA < SRR4302544.3103924/94‑1 (MQ=60)
TAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACC < SRR4302544.3474099/94‑1 (MQ=60)
TAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACC > SRR4302544.2235962/1‑94 (MQ=60)
AACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCA > SRR4302544.3958796/1‑94 (MQ=60)
GTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAA < SRR4302544.3704011/94‑1 (MQ=60)
AGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCA < SRR4302544.4088758/94‑1 (MQ=60)
AGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCA < SRR4302544.1394673/94‑1 (MQ=60)
GGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCAC > SRR4302544.2114057/1‑94 (MQ=60)
GCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACT < SRR4302544.1460156/94‑1 (MQ=60)
CCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTA > SRR4302544.783640/1‑94 (MQ=60)
CCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTA > SRR4302544.3963421/1‑94 (MQ=60)
CTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACG > SRR4302544.2305390/1‑94 (MQ=60)
TTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGC > SRR4302544.637042/1‑94 (MQ=60)
CGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAA > SRR4302544.162469/1‑94 (MQ=60)
CGCTTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAA > SRR4302544.4066813/1‑94 (MQ=60)
TTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGC > SRR4302544.442817/1‑94 (MQ=60)
TTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGC > SRR4302544.2115682/1‑94 (MQ=60)
TTCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACATGCTGTCACCAGCGAACCACTATGCAAAGC > SRR4302544.2115683/1‑94 (MQ=60)
TCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCC < SRR4302544.3991896/94‑1 (MQ=60)
TCCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCC < SRR4302544.3597994/94‑1 (MQ=60)
CCCGGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCG > SRR4302544.3900869/1‑94 (MQ=60)
GGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTT > SRR4302544.3697312/1‑94 (MQ=60)
GGATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTT > SRR4302544.1026895/1‑94 (MQ=60)
ATTCCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCC < SRR4302544.38798/94‑1 (MQ=60)
CCCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACC > SRR4302544.88252/1‑94 (MQ=60)
CCTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCA < SRR4302544.3124003/94‑1 (MQ=60)
CTATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCAC > SRR4302544.3452736/1‑94 (MQ=60)
ATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCA < SRR4302544.1457349/94‑1 (MQ=60)
ATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCA < SRR4302544.3755074/94‑1 (MQ=60)
ATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCA < SRR4302544.3755073/94‑1 (MQ=60)
ATTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCA > SRR4302544.4598755/1‑94 (MQ=60)
TTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAG < SRR4302544.197317/94‑1 (MQ=60)
TTGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAG < SRR4302544.1996250/94‑1 (MQ=60)
TGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGT > SRR4302544.3502704/1‑94 (MQ=60)
TGGACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGT < SRR4302544.4480209/94‑1 (MQ=60)
ACCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACA < SRR4302544.972533/94‑1 (MQ=60)
CCTGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACAC < SRR4302544.2960197/94‑1 (MQ=60)
TGGCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCT > SRR4302544.650563/1‑94 (MQ=60)
GCAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTT < SRR4302544.4674898/94‑1 (MQ=60)
AAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTAC > SRR4302544.480312/1‑94 (MQ=60)
AGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACT < SRR4302544.4648455/94‑1 (MQ=60)
AGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACT < SRR4302544.4229753/94‑1 (MQ=60)
GC‑AAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTA < SRR4302544.3212534/94‑1 (MQ=60)
GC‑AAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTA < SRR4302544.1630604/94‑1 (MQ=60)
C‑AAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAG < SRR4302544.3985336/94‑1 (MQ=60)
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AGAATTTCTTCCGGTTCCGTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAGG‑AAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAG > NC_000913/3430360‑3430546
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
