Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1357	179.3	9500450	96.1%	9129932	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,490,327	T→C	P41P (CCT→CCC)	yhfC →	putative transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,490,327	0	T	C	99.1%	680.7 / ‑3.0	215	P41P (CCT→CCC)	yhfC	putative transport
Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (87/125); total (88/127)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.14e-01

Only 100 of 220 total aligned reads displayed.

GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCC  >  NC_000913/3490237‑3490416

 aTTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGtt                                                                                        >  2:4148524/1‑93 (MQ=255)

   tAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTc                                                                                      <  1:607943/93‑1 (MQ=255)

   tAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTc                                                                                      <  1:3555822/93‑1 (MQ=255)

   tAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTc                                                                                      >  2:4291118/1‑93 (MQ=255)

    aGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTcc                                                                                     <  1:3057811/93‑1 (MQ=255)

     gCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCa                                                                                    >  2:2549756/1‑93 (MQ=255)

      cTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAg                                                                                   <  1:4267681/93‑1 (MQ=255)

        ttCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTa                                                                                 <  1:4316012/93‑1 (MQ=255)

        ttCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTa                                                                                 <  2:501608/93‑1 (MQ=255)

         tctctcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGAATAGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTAt                                                                                <  1:3876066/93‑1 (MQ=255)

           tctcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGa                                                                              <  2:809948/93‑1 (MQ=255)

           tctcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGa                                                                              <  2:1187977/93‑1 (MQ=255)

            ctcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAg                                                                             >  1:2311765/1‑93 (MQ=255)

             tcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGt                                                                            >  1:3763009/1‑93 (MQ=255)

              ccTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTa                                                                           >  2:3754957/1‑93 (MQ=255)

               cTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTaa                                                                          <  2:1625777/93‑1 (MQ=255)

                tACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAt                                                                         <  1:3996997/93‑1 (MQ=255)

                tACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAt                                                                         >  2:704365/1‑93 (MQ=255)

                 aCGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATa                                                                        <  2:2298206/93‑1 (MQ=255)

                 aCGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATa                                                                        <  2:4641909/93‑1 (MQ=255)

                 aCGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATa                                                                        <  2:4300952/93‑1 (MQ=255)

                   gCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacc                                                                      >  1:935663/1‑93 (MQ=255)

                   gCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacc                                                                      <  2:2425219/93‑1 (MQ=255)

                    cACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacct                                                                     <  1:2540488/93‑1 (MQ=255)

                    cACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacct                                                                     >  2:124889/1‑93 (MQ=255)

                      ctgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttc                                                                   >  2:3736353/1‑93 (MQ=255)

                      ctgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttc                                                                   <  2:2914642/93‑1 (MQ=255)

                       tgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttca                                                                  <  2:1593982/93‑1 (MQ=255)

                       tgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttca                                                                  <  1:2327427/93‑1 (MQ=255)

                       tgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttca                                                                  >  2:609164/1‑93 (MQ=255)

                       tgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttca                                                                  <  2:1062063/93‑1 (MQ=255)

                        gactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcac                                                                 >  2:3895372/1‑93 (MQ=255)

                        gactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcac                                                                 <  2:2091988/93‑1 (MQ=255)

                         actgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcacc                                                                <  1:374161/93‑1 (MQ=255)

                          ctgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcacct                                                               <  1:1435862/93‑1 (MQ=255)

                           tgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcacctt                                                              <  2:537760/93‑1 (MQ=255)

                           tgGTGCGTTGGGTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcacctt                                                              <  2:1473512/93‑1 (MQ=255)

                             gTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATCCCTTCACCTTcc                                                            <  2:2502930/93‑1 (MQ=255)

                             gTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTcc                                                            <  1:1632171/93‑1 (MQ=255)

                             gTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTcc                                                            >  1:1112239/1‑93 (MQ=255)

                              tGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCt                                                           <  1:416311/93‑1 (MQ=255)

                                cGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCa                                                         <  2:2439349/93‑1 (MQ=255)

                                 gTTGGTTATTGTCACCGGGATGGCGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCaa                                                        <  2:2592954/93‑1 (MQ=255)

                                  ttGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAc                                                       >  1:3351813/1‑93 (MQ=255)

                                  gtGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAc                                                       <  2:4055359/92‑1 (MQ=255)

                                    tgTTATTGTCACCGGAATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGc                                                     <  2:467208/92‑1 (MQ=255)

                                    ggTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGc                                                     >  2:2350639/1‑93 (MQ=255)

                                     gTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGcc                                                    <  2:3982075/93‑1 (MQ=255)

                                     gTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGcc                                                    >  2:4452735/1‑93 (MQ=255)

                                      ttATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCg                                                   >  2:4573868/1‑93 (MQ=255)

                                        aTTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGc                                                 >  1:2754903/1‑93 (MQ=255)

                                         ttGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCa                                                >  1:1950122/1‑93 (MQ=255)

                                          tGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAt                                               <  1:3686004/93‑1 (MQ=255)

                                          tGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAt                                               <  2:3256547/93‑1 (MQ=255)

                                             taCCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAtttt                                            <  1:3216837/92‑1 (MQ=255)

                                             cACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAtttt                                            <  1:76264/93‑1 (MQ=255)

                                             cACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAtttt                                            <  2:1115407/93‑1 (MQ=255)

                                              aCCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTa                                           >  1:2950312/1‑93 (MQ=255)

                                               ccGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTaa                                          <  1:456005/93‑1 (MQ=255)

                                                cGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAt                                         <  1:4073941/93‑1 (MQ=255)

                                                   gATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAtctc                                      >  2:3669359/1‑93 (MQ=255)

                                                    aTGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATctct                                     <  2:2515802/93‑1 (MQ=255)

                                                    aTGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGCCATTTTAATctct                                     <  1:3135303/93‑1 (MQ=255)

                                                     tGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTa                                    <  1:4638906/93‑1 (MQ=255)

                                                     tGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTa                                    >  2:2866960/1‑93 (MQ=255)

                                                      ggTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTAt                                   <  2:635216/93‑1 (MQ=255)

                                                       gTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATc                                  >  2:2777178/1‑93 (MQ=255)

                                                       gTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATc                                  <  2:4029167/93‑1 (MQ=255)

                                                           tGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTcc                              >  1:98010/1‑93 (MQ=255)

                                                           tGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTcc                              >  2:3815872/1‑93 (MQ=255)

                                                            gggAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCt                             >  1:1850923/1‑93 (MQ=255)

                                                              gAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCa                           >  2:322472/1‑93 (MQ=255)

                                                              gAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAAACCTTCACCTTCCTCAACGCCGGCATTTTTATCTCTATCCTCCTCa                           >  2:2786263/1‑93 (MQ=255)

                                                                aaTATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAAc                         <  1:2779436/93‑1 (MQ=255)

                                                                aaTATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAAc                         >  1:4443180/1‑93 (MQ=255)

                                                                aaTATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAAc                         >  2:103284/1‑93 (MQ=255)

                                                                 atatCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACg                        >  1:3398536/1‑93 (MQ=255)

                                                                  tatCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGc                       >  1:1608398/1‑93 (MQ=255)

                                                                   atCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGcc                      >  2:1634490/1‑93 (MQ=255)

                                                                    tCGCCGATTTTTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCt                     >  2:1945930/1‑93 (MQ=255)

                                                                    tCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCt                     <  1:1173111/93‑1 (MQ=255)

                                                                    tCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCt                     >  1:2161283/1‑93 (MQ=255)

                                                                      gCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTgg                   <  2:3518475/93‑1 (MQ=255)

                                                                        cGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCt                 >  2:3071705/1‑93 (MQ=255)

                                                                        cGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCt                 <  1:1486281/93‑1 (MQ=255)

                                                                         gATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTg                >  1:4647463/1‑93 (MQ=255)

                                                                           ttattTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGAt              <  1:1399826/93‑1 (MQ=255)

                                                                           ttattTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGAt              >  2:1544991/1‑93 (MQ=255)

                                                                            tattTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATg             <  2:1888468/93‑1 (MQ=255)

                                                                             attTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATgg            <  1:830677/93‑1 (MQ=255)

                                                                                tCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGaaa         <  2:4334573/93‑1 (MQ=255)

                                                                                 taaTCGGCCCGTTTCGAGTATGAGTAATACGTTCGCTATCCTAAACGCCGGCCTTTAAATCTCTCTCTTCCTCAACGCCTGGCTGATGGAAAt        <  1:699074/92‑1 (MQ=255)

                                                                                 cAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAAt        >  2:3941192/1‑93 (MQ=255)

                                                                                  aaTCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATc       >  1:2069533/1‑93 (MQ=255)

                                                                                  aaTCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATc       <  1:1733087/93‑1 (MQ=255)

                                                                                  aaTCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATc       <  1:1887301/93‑1 (MQ=255)

                                                                                  aaTCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATc       >  2:3417806/1‑93 (MQ=255)

                                                                                   aTCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCg      >  1:2893126/1‑93 (MQ=255)

                                                                                     cTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTc    <  2:77637/93‑1 (MQ=255)

                                                                                       gCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTccc  >  2:3302021/1‑93 (MQ=255)

GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCC  >  NC_000913/3490237‑3490416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTT  >  NC_000913/3490235‑3490419

TGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCG                                                                                             <  SRR4302544.4625973/94‑1 (MQ=60)

  GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTT                                                                                           <  SRR4302544.974012/94‑1 (MQ=60)

  GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTT                                                                                           <  SRR4302544.2154539/94‑1 (MQ=60)

   ATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTT                                                                                          >  SRR4302544.3243496/1‑94 (MQ=60)

     TAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCC                                                                                        <  SRR4302544.3589900/94‑1 (MQ=60)

     TAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCC                                                                                        <  SRR4302544.613910/94‑1 (MQ=60)

      AGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCA                                                                                       >  SRR4302544.2367094/1‑94 (MQ=60)

      AGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCA                                                                                       <  SRR4302544.3086996/94‑1 (MQ=60)

      AGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCA                                                                                       <  SRR4302544.30909/94‑1 (MQ=60)

        CTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGT                                                                                     >  SRR4302544.3899976/1‑94 (MQ=60)

        CTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGT                                                                                     <  SRR4302544.4311239/94‑1 (MQ=60)

          TTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTAT                                                                                   <  SRR4302544.4602136/94‑1 (MQ=60)

          TTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTAT                                                                                   <  SRR4302544.4359978/94‑1 (MQ=60)

           TCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGAATAGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATG                                                                                  <  SRR4302544.3914554/94‑1 (MQ=60)

            CTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGGGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGA                                                                                 >  SRR4302544.1558853/1‑94 (MQ=60)

             TCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAG                                                                                >  SRR4302544.2333630/1‑94 (MQ=60)

              CTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGT                                                                               >  SRR4302544.3800350/1‑94 (MQ=60)

              CTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGT                                                                               >  SRR4302544.3955817/1‑94 (MQ=60)

              CTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGT                                                                               >  SRR4302544.3800351/1‑94 (MQ=60)

                CCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAA                                                                             <  SRR4302544.3012069/94‑1 (MQ=60)

                  TACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATA                                                                           <  SRR4302544.4036783/94‑1 (MQ=60)

                  TACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATA                                                                           >  SRR4302544.4759025/1‑94 (MQ=60)

                   ACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATAC                                                                          >  SRR4302544.1855687/1‑94 (MQ=60)

                    CGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACC                                                                         >  SRR4302544.944880/1‑94 (MQ=60)

                      CACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTT                                                                       <  SRR4302544.2564882/94‑1 (MQ=60)

                        CTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCA                                                                     >  SRR4302544.4040098/1‑94 (MQ=60)

                        CTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTGCA                                                                     >  SRR4302544.2340953/1‑94 (MQ=60)

                         TGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCAC                                                                    <  SRR4302544.4375960/94‑1 (MQ=60)

                         TGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCAC                                                                    <  SRR4302544.2085131/94‑1 (MQ=60)

                         TGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCAC                                                                    <  SRR4302544.2349491/94‑1 (MQ=60)

                           ACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCT                                                                  <  SRR4302544.377983/94‑1 (MQ=60)

                            CTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTT                                                                 <  SRR4302544.1450156/94‑1 (MQ=60)

                            CTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTT                                                                 <  SRR4302544.995471/94‑1 (MQ=60)

                              GGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCC                                                               >  SRR4302544.1123333/1‑94 (MQ=60)

                               GTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCT                                                              <  SRR4302544.1648235/94‑1 (MQ=60)

                                TGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTC                                                             <  SRR4302544.420562/94‑1 (MQ=60)

                                   GTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAC                                                          >  SRR4302544.3383799/1‑94 (MQ=60)

                                      GGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCC                                                       >  SRR4302544.2786599/1‑94 (MQ=60)

                                       GTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCG                                                      <  SRR4302544.4340246/94‑1 (MQ=60)

                                       GTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCG                                                      <  SRR4302544.1525249/94‑1 (MQ=60)

                                        TTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGG                                                     <  SRR4302544.1309064/94‑1 (MQ=60)

                                         TATTGTCACCGGGATGGTGATGTGTTATTTCGCCTATTATTTCAATCTGCCCGTTTCTAGTATGAGTAATACCTTCACCTTCCTCTACGCCGGC                                                    >  SRR4302544.3641805/1‑94 (MQ=60)

                                         TATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGC                                                    >  SRR4302544.2781420/1‑94 (MQ=60)

                                          ATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCA                                                   >  SRR4302544.1969016/1‑94 (MQ=60)

                                          ATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCA                                                   >  SRR4302544.4643919/1‑94 (MQ=60)

                                           TTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAT                                                  <  SRR4302544.2354176/94‑1 (MQ=60)

                                            TGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATT                                                 <  SRR4302544.3722751/94‑1 (MQ=60)

                                             GTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTT                                                <  SRR4302544.2979693/94‑1 (MQ=60)

                                               TACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTA                                              <  SRR4302544.3247526/94‑1 (MQ=60)

                                               CACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTA                                              >  SRR4302544.2978651/1‑94 (MQ=60)

                                               CACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTA                                              >  SRR4302544.3934729/1‑94 (MQ=60)

                                               CACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTA                                              <  SRR4302544.77000/94‑1 (MQ=60)

                                                 CCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAT                                            <  SRR4302544.460505/94‑1 (MQ=60)

                                                  CGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATC                                           <  SRR4302544.4114486/94‑1 (MQ=60)

                                                  CGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATC                                           <  SRR4302544.4114487/94‑1 (MQ=60)

                                                   GGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCT                                          <  SRR4302544.3532217/94‑1 (MQ=60)

                                                     GATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCT                                        <  SRR4302544.2187999/94‑1 (MQ=60)

                                                      ATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGCCATTTTAATCTCTA                                       <  SRR4302544.3165082/94‑1 (MQ=60)

                                                       TGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTAT                                      <  SRR4302544.3286100/94‑1 (MQ=60)

                                                       TGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTAT                                      <  SRR4302544.4684862/94‑1 (MQ=60)

                                                       TGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTAT                                      <  SRR4302544.4684861/94‑1 (MQ=60)

                                                       TGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTAT                                      <  SRR4302544.143981/94‑1 (MQ=60)

                                                            ATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCC                                 >  SRR4302544.3477241/1‑94 (MQ=60)

                                                            ATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCC                                 >  SRR4302544.98907/1‑94 (MQ=60)

                                                             TGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCT                                >  SRR4302544.1868832/1‑94 (MQ=60)

                                                              GGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTC                               >  SRR4302544.1913495/1‑94 (MQ=60)

                                                                GAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAA                             <  SRR4302544.2978344/94‑1 (MQ=60)

                                                                 AAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAAC                            >  SRR4302544.4487967/1‑94 (MQ=60)

                                                                  AATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACG                           <  SRR4302544.1157131/94‑1 (MQ=60)

                                                                  AATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACG                           >  SRR4302544.3431031/1‑94 (MQ=60)

                                                                  AATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACG                           <  SRR4302544.2806175/94‑1 (MQ=60)

                                                                  AATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACG                           <  SRR4302544.2710897/94‑1 (MQ=60)

                                                                  AATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACG                           <  SRR4302544.929266/94‑1 (MQ=60)

                                                                   ATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCACCGC                          >  SRR4302544.1630815/1‑94 (MQ=60)

                                                                   ATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGC                          >  SRR4302544.1624255/1‑94 (MQ=60)

                                                                     ATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCT                        >  SRR4302544.1681206/1‑94 (MQ=60)

                                                                     ATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCT                        >  SRR4302544.2181806/1‑94 (MQ=60)

                                                                      TCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTG                       <  SRR4302544.1184814/94‑1 (MQ=60)

                                                                      TCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTG                       <  SRR4302544.1470994/94‑1 (MQ=60)

                                                                          CGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTG                   >  SRR4302544.4693475/1‑94 (MQ=60)

                                                                          CGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTG                   <  SRR4302544.1500972/94‑1 (MQ=60)

                                                                           GATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGA                  >  SRR4302544.624263/1‑94 (MQ=60)

                                                                            ATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGAT                 <  SRR4302544.2817079/94‑1 (MQ=60)

                                                                             TTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATG                <  SRR4302544.1413774/94‑1 (MQ=60)

                                                                              TATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGG               <  SRR4302544.4380099/94‑1 (MQ=60)

                                                                               ATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGA              <  SRR4302544.838847/94‑1 (MQ=60)

                                                                                TTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAA             >  SRR4302544.614973/1‑94 (MQ=60)

                                                                                  TCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAAT           <  SRR4302544.4224377/94‑1 (MQ=60)

                                                                                   CAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATC          >  SRR4302544.2089407/1‑94 (MQ=60)

                                                                                   CAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATC          <  SRR4302544.706033/94‑1 (MQ=60)

                                                                                    AATCTGCCCGTTTCCAGTATGAGTAATACCTTCCCCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCG         <  SRR4302544.1905532/94‑1 (MQ=60)

                                                                                    AATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCG         <  SRR4302544.1750077/94‑1 (MQ=60)

                                                                                    AATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCG         >  SRR4302544.1960283/1‑94 (MQ=60)

                                                                                    AATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCG         <  SRR4302544.1905534/94‑1 (MQ=60)

                                                                                    AATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCG         >  SRR4302544.2920995/1‑94 (MQ=60)

                                                                                      TCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTC       <  SRR4302544.3414786/94‑1 (MQ=60)

                                                                                      TCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTC       >  SRR4302544.791377/1‑94 (MQ=60)

                                                                                         GCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCG    <  SRR4302544.3725408/94‑1 (MQ=60)

                                                                                           CCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTT  <  SRR4302544.1515217/94‑1 (MQ=60)

                                                                                           CCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTT  >  SRR4302544.416564/1‑94 (MQ=60)

TGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTT  >  NC_000913/3490235‑3490419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`