Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,490,327	T→C	P41P (CCT→CCC)	yhfC →	putative transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,490,327	0	T	C	99.7%	987.1 / NA	301	P41P (CCT→CCC)	yhfC	putative transport
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (114/186); minor base A (0/1); total (114/187)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 308 total aligned reads displayed.

GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCC  >  NC_000913/3490237‑3490416

gATTAGCTTTCTCTCCTACGCACTGACTGGTGCGGTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGt                                                                                         >  2:1859223/1‑93 (MQ=255)

 aTTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGtt                                                                                        >  2:5076367/1‑93 (MQ=255)

  ttAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGttt                                                                                       <  1:5833790/93‑1 (MQ=255)

  ttAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGttt                                                                                       <  1:4059073/93‑1 (MQ=255)

   tAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTc                                                                                      <  1:3935344/93‑1 (MQ=255)

   tAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTc                                                                                      >  1:1688310/1‑93 (MQ=255)

   tAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTc                                                                                      <  2:4463327/93‑1 (MQ=255)

    aGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTcc                                                                                     <  2:5314009/93‑1 (MQ=255)

    aGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTcc                                                                                     >  1:3642861/1‑93 (MQ=255)

     gCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCa                                                                                    >  1:5954274/1‑93 (MQ=255)

     gCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCa                                                                                    <  1:900607/93‑1 (MQ=255)

       tttCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGt                                                                                  >  1:1556309/1‑93 (MQ=255)

       tttCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGt                                                                                  >  1:413010/1‑93 (MQ=255)

        ttCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTa                                                                                 >  2:5563726/1‑93 (MQ=255)

        ttCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTa                                                                                 <  1:3041572/93‑1 (MQ=255)

         tctctcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTAt                                                                                <  1:4203091/93‑1 (MQ=255)

         tctctcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTAt                                                                                <  2:3962177/93‑1 (MQ=255)

          ctctcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATg                                                                               >  2:3437518/1‑93 (MQ=255)

             tcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAga                                                                            >  2:4329299/1‑92 (MQ=255)

             tcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGt                                                                            <  2:3814231/93‑1 (MQ=255)

             tcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGt                                                                            <  1:5024415/93‑1 (MQ=255)

               cTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTaa                                                                          <  1:3462670/93‑1 (MQ=255)

               cTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTaa                                                                          <  1:1248752/93‑1 (MQ=255)

               cTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTaa                                                                          <  2:6127927/93‑1 (MQ=255)

                tACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAt                                                                         <  1:5597872/93‑1 (MQ=255)

                tACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAt                                                                         <  1:5477313/93‑1 (MQ=255)

                tACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAt                                                                         <  1:4570542/93‑1 (MQ=255)

                 aCGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATa                                                                        >  2:4223329/1‑93 (MQ=255)

                  cGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATac                                                                       >  1:4772017/1‑93 (MQ=255)

                  cGCACTGACTGGTGCGGTTGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATac                                                                       <  2:5274982/93‑1 (MQ=255)

                    cACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacct                                                                     >  1:72542/1‑93 (MQ=255)

                    cACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacct                                                                     <  2:1650189/93‑1 (MQ=255)

                    cACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacct                                                                     >  1:5292089/1‑93 (MQ=255)

                    cACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacct                                                                     <  1:215537/93‑1 (MQ=255)

                        gactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcac                                                                 <  1:6640162/93‑1 (MQ=255)

                        gactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcac                                                                 <  1:6244426/93‑1 (MQ=255)

                         gctgGGGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcacc                                                                <  1:105800/92‑1 (MQ=255)

                          ctgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcacct                                                               <  2:1345820/93‑1 (MQ=255)

                          ctgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcacct                                                               <  2:5709392/93‑1 (MQ=255)

                          ctgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcacct                                                               <  1:4360509/93‑1 (MQ=255)

                            ggTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcaccttc                                                             >  2:4072445/1‑93 (MQ=255)

                            ggTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcaccttc                                                             <  2:2655908/93‑1 (MQ=255)

                             gTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTcc                                                            <  1:4308190/93‑1 (MQ=255)

                              tGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCt                                                           <  2:2729581/93‑1 (MQ=255)

                              tGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCt                                                           >  2:1067815/1‑93 (MQ=255)

                               gCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTc                                                          <  1:3328426/93‑1 (MQ=255)

                               gCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTc                                                          <  2:2240324/93‑1 (MQ=255)

                                  ttGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAc                                                       <  2:6682996/93‑1 (MQ=255)

                                  ttGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAc                                                       >  1:2450303/1‑93 (MQ=255)

                                  ttGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAc                                                       <  2:1730660/93‑1 (MQ=255)

                                    ggTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGc                                                     <  2:5838508/93‑1 (MQ=255)

                                     gTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGcc                                                    <  1:6061594/93‑1 (MQ=255)

                                        aTTGTCACCGGGATGTTGATGGGAGATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGc                                                 <  1:1315047/93‑1 (MQ=255)

                                        aTTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGc                                                 >  1:5231081/1‑93 (MQ=255)

                                        aTTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGc                                                 <  2:6513397/93‑1 (MQ=255)

                                         ttGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCa                                                >  2:6290156/1‑93 (MQ=255)

                                           gTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAtt                                              >  2:4269465/1‑93 (MQ=255)

                                           gTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAtt                                              >  2:4636924/1‑93 (MQ=255)

                                             cACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAtttt                                            >  2:1518972/1‑93 (MQ=255)

                                              aCCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTa                                           >  2:3089431/1‑93 (MQ=255)

                                              aCCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTa                                           >  1:372100/1‑93 (MQ=255)

                                              aCCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTa                                           <  2:3228269/93‑1 (MQ=255)

                                               ccGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTaa                                          <  1:2693682/93‑1 (MQ=255)

                                                cGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAt                                         <  2:5253278/93‑1 (MQ=255)

                                                cGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAt                                         <  2:2452078/93‑1 (MQ=255)

                                                 gggATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAtc                                        <  2:3491052/93‑1 (MQ=255)

                                                 gggATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAtc                                        <  1:3275659/93‑1 (MQ=255)

                                                 gggATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAtc                                        <  1:973719/93‑1 (MQ=255)

                                                     tGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTa                                    >  2:6366844/1‑93 (MQ=255)

                                                        taaTGTGAAATATCGCCTATTATTCCAATCTGCCCGTTTCCAGTATGAGTAATCCCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCt                                 <  1:4630634/91‑1 (MQ=255)

                                                        tGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCGCCTTCCTCAACGCCGGCATTTTAATCTCTATCt                                 <  1:3895143/93‑1 (MQ=255)

                                                           tGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTcc                              >  2:5790454/1‑93 (MQ=255)

                                                           tGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTcc                              <  1:4432009/93‑1 (MQ=255)

                                                            gggAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCt                             >  1:2035315/1‑93 (MQ=255)

                                                            gggAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCt                             >  2:594686/1‑93 (MQ=255)

                                                               aaaTATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCaa                          >  1:5687565/1‑93 (MQ=255)

                                                                aaTATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAAc                         <  2:2544882/93‑1 (MQ=255)

                                                                  tatCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGc                       >  2:3902713/1‑93 (MQ=255)

                                                                  tatCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGc                       >  2:3676371/1‑93 (MQ=255)

                                                                   atCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGcc                      <  2:2358441/93‑1 (MQ=255)

                                                                   atCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGcc                      <  1:4867745/93‑1 (MQ=255)

                                                                   atCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGcc                      >  2:6254170/1‑93 (MQ=255)

                                                                   atCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGcc                      >  2:3333533/1‑93 (MQ=255)

                                                                    tCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCt                     <  2:884560/93‑1 (MQ=255)

                                                                    tCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCt                     <  1:1448013/93‑1 (MQ=255)

                                                                        cGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCt                 >  1:6318560/1‑93 (MQ=255)

                                                                          attattTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCGACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGa               <  2:4702079/93‑1 (MQ=255)

                                                                          attattTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGa               >  1:2255759/1‑93 (MQ=255)

                                                                              tttCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGa           <  1:1030548/93‑1 (MQ=255)

                                                                              tttCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGa           >  2:684440/1‑93 (MQ=255)

                                                                               ttCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGaa          <  1:1931060/93‑1 (MQ=255)

                                                                                tCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGaaa         <  2:2017015/93‑1 (MQ=255)

                                                                                 cAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAAt        >  1:5149712/1‑93 (MQ=255)

                                                                                 cAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAAt        <  2:760576/93‑1 (MQ=255)

                                                                                  aaTCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATc       <  2:5179173/93‑1 (MQ=255)

                                                                                     cTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTc    >  2:4749126/1‑93 (MQ=255)

                                                                                      tGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTcc   <  2:2795066/93‑1 (MQ=255)

                                                                                      tGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGACTGGCTGATGGAAATCGTcc   >  1:3130149/1‑93 (MQ=255)

                                                                                       gCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTccc  >  2:6099187/1‑93 (MQ=255)

                                                                                       gCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTccc  <  1:5769167/93‑1 (MQ=255)

GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCC  >  NC_000913/3490237‑3490416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTTG  >  NC_000913/3490234‑3490420

ATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCC                                                                                               <  SRR4302536.2957992/94‑1 (MQ=60)

ATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCC                                                                                               <  SRR4302536.312627/94‑1 (MQ=60)

ATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCC                                                                                               >  SRR4302536.3961057/1‑94 (MQ=60)

 TGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCG                                                                                              <  SRR4302536.698042/94‑1 (MQ=60)

 TGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCG                                                                                              <  SRR4302536.1288624/94‑1 (MQ=60)

  GGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGT                                                                                             <  SRR4302536.6268311/94‑1 (MQ=60)

   GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTT                                                                                            <  SRR4302536.3764615/94‑1 (MQ=60)

   GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTT                                                                                            <  SRR4302536.4467153/94‑1 (MQ=60)

    ATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTT                                                                                           <  SRR4302536.100249/94‑1 (MQ=60)

     TTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTC                                                                                          <  SRR4302536.4945849/94‑1 (MQ=60)

     TTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTC                                                                                          <  SRR4302536.6007612/94‑1 (MQ=60)

     TTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTC                                                                                          <  SRR4302536.4179394/94‑1 (MQ=60)

     TTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTC                                                                                          >  SRR4302536.1737216/1‑94 (MQ=60)

      TAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCC                                                                                         <  SRR4302536.4052255/94‑1 (MQ=60)

      TAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCC                                                                                         >  SRR4302536.3751787/1‑94 (MQ=60)

       AGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCA                                                                                        >  SRR4302536.6131674/1‑94 (MQ=60)

        GCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAG                                                                                       <  SRR4302536.927138/94‑1 (MQ=60)

         CTTTCTCTCCTACGCACTGACTGTTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCACGTTTCCAGT                                                                                      >  SRR4302536.6825074/1‑94 (MQ=60)

         CTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGT                                                                                      <  SRR4302536.4032347/94‑1 (MQ=60)

         CTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGT                                                                                      >  SRR4302536.423911/1‑94 (MQ=60)

         CTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGT                                                                                      >  SRR4302536.1602024/1‑94 (MQ=60)

           TTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTAT                                                                                    <  SRR4302536.3130988/94‑1 (MQ=60)

           TTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTAT                                                                                    <  SRR4302536.113722/94‑1 (MQ=60)

            TCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATG                                                                                   <  SRR4302536.4328029/94‑1 (MQ=60)

            TCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATG                                                                                   <  SRR4302536.4897435/94‑1 (MQ=60)

            TCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATG                                                                                   <  SRR4302536.2033652/94‑1 (MQ=60)

            TCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATG                                                                                   >  SRR4302536.3543468/1‑94 (MQ=60)

             CTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGA                                                                                  <  SRR4302536.5442476/94‑1 (MQ=60)

             CTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGA                                                                                  <  SRR4302536.6110622/94‑1 (MQ=60)

              TCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAG                                                                                 >  SRR4302536.6208295/1‑94 (MQ=60)

               CTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGT                                                                                >  SRR4302536.3067827/1‑94 (MQ=60)

               CTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGT                                                                                >  SRR4302536.6486385/1‑94 (MQ=60)

               CGCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATACCTCCCATTATTTCAATCTGCCCGTTTCCAGTATGAGT                                                                                <  SRR4302536.963882/94‑1 (MQ=60)

                TCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTA                                                                               <  SRR4302536.5175015/94‑1 (MQ=60)

                TCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTA                                                                               >  SRR4302536.5338027/1‑94 (MQ=60)

                 CCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAA                                                                              <  SRR4302536.4354881/94‑1 (MQ=60)

                 CCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAA                                                                              <  SRR4302536.2328902/94‑1 (MQ=60)

                 CCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAA                                                                              >  SRR4302536.2036854/1‑94 (MQ=60)

                  CTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAT                                                                             <  SRR4302536.1286240/94‑1 (MQ=60)

                  CTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAT                                                                             <  SRR4302536.3565848/94‑1 (MQ=60)

                   TACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATA                                                                            <  SRR4302536.4707704/94‑1 (MQ=60)

                   TACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATA                                                                            <  SRR4302536.5764279/94‑1 (MQ=60)

                   TACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATA                                                                            <  SRR4302536.5640902/94‑1 (MQ=60)

                    ACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATAC                                                                           >  SRR4302536.4915723/1‑94 (MQ=60)

                     CGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACC                                                                          >  SRR4302536.542281/1‑94 (MQ=60)

                      GCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCT                                                                         >  SRR4302536.74503/1‑94 (MQ=60)

                      GCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCT                                                                         >  SRR4302536.5449898/1‑94 (MQ=60)

                       CACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTT                                                                        <  SRR4302536.6212051/94‑1 (MQ=60)

                       CACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTT                                                                        <  SRR4302536.221250/94‑1 (MQ=60)

                        ACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGTGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTC                                                                       <  SRR4302536.4769306/94‑1 (MQ=60)

                        ACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTC                                                                       >  SRR4302536.2162644/1‑94 (MQ=60)

                        ACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTC                                                                       >  SRR4302536.6393320/1‑94 (MQ=60)

                        ACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTC                                                                       <  SRR4302536.3242317/94‑1 (MQ=60)

                          TGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCAC                                                                     >  SRR4302536.3812078/1‑94 (MQ=60)

                           GACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACC                                                                    <  SRR4302536.6430444/94‑1 (MQ=60)

                           GACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACC                                                                    >  SRR4302536.1386547/1‑94 (MQ=60)

                           GACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACC                                                                    <  SRR4302536.6837622/94‑1 (MQ=60)

                            GCTGGGGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCT                                                                   <  SRR4302536.108624/94‑1 (MQ=60)

                            ACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCT                                                                   >  SRR4302536.2134387/1‑94 (MQ=60)

                             CTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTT                                                                  <  SRR4302536.4490864/94‑1 (MQ=60)

                              TGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTC                                                                 <  SRR4302536.1209974/94‑1 (MQ=60)

                              TGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTC                                                                 <  SRR4302536.4800718/94‑1 (MQ=60)

                               GGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCC                                                                >  SRR4302536.3197206/1‑94 (MQ=60)

                                GTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCT                                                               <  SRR4302536.5098015/94‑1 (MQ=60)

                                GTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCT                                                               <  SRR4302536.808960/94‑1 (MQ=60)

                                GTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCT                                                               <  SRR4302536.4437084/94‑1 (MQ=60)

                                GTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCT                                                               <  SRR4302536.3398385/94‑1 (MQ=60)

                                 TGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTC                                                              <  SRR4302536.1349236/94‑1 (MQ=60)

                                  GCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCA                                                             >  SRR4302536.259321/1‑94 (MQ=60)

                                  GCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCA                                                             <  SRR4302536.3426919/94‑1 (MQ=60)

                                   CGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAA                                                            >  SRR4302536.4271568/1‑94 (MQ=60)

                                   CGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAA                                                            >  SRR4302536.1905426/1‑94 (MQ=60)

                                    GTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAC                                                           >  SRR4302536.2524329/1‑94 (MQ=60)

                                     TTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACG                                                          <  SRR4302536.5210366/94‑1 (MQ=60)

                                     GTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACG                                                          <  SRR4302536.4227564/94‑1 (MQ=60)

                                      TGTTTATTGTCACCGGGATGGTGATGGAAAATATCGCCGTTTATTTCAATCTCCCCGTTTCCATTATGATTAATCCCTTCACCTCCCTCAACGC                                                         <  SRR4302536.3623631/94‑1 (MQ=57)

                                        GTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCG                                                       <  SRR4302536.6242425/94‑1 (MQ=60)

                                         TTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGG                                                      <  SRR4302536.1459307/94‑1 (MQ=60)

                                          TATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGC                                                     >  SRR4302536.5386940/1‑94 (MQ=60)

                                          TATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGC                                                     >  SRR4302536.5288968/1‑94 (MQ=60)

                                          TATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGC                                                     >  SRR4302536.5356151/1‑94 (MQ=60)

                                           ATTGTCACCGGGATGTTGATGGGAGATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCA                                                    <  SRR4302536.1354314/94‑1 (MQ=60)

                                            TTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAT                                                   >  SRR4302536.4674259/1‑94 (MQ=60)

                                            TTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAT                                                   <  SRR4302536.4386677/94‑1 (MQ=60)

                                             TGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATT                                                  <  SRR4302536.5662084/94‑1 (MQ=60)

                                             TGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTGCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCGCCTTCCTCAACGCCGGCATT                                                  <  SRR4302536.98032/94‑1 (MQ=60)

                                              GTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTACTACCTTCACCTTCCTCAACGCCGGCATTT                                                 <  SRR4302536.6918987/94‑1 (MQ=60)

                                              GTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTT                                                 <  SRR4302536.2508553/94‑1 (MQ=60)

                                              GTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTT                                                 <  SRR4302536.5988740/94‑1 (MQ=60)

                                              GTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTT                                                 <  SRR4302536.5822529/94‑1 (MQ=60)

                                                CACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTA                                               >  SRR4302536.2647169/1‑94 (MQ=60)

                                                CACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTA                                               >  SRR4302536.381916/1‑94 (MQ=60)

                                                 ACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAA                                              <  SRR4302536.1976249/94‑1 (MQ=60)

                                                  CCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAT                                             <  SRR4302536.6326659/94‑1 (MQ=60)

                                                  CCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAT                                             <  SRR4302536.2774089/94‑1 (MQ=60)

                                                  CCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAT                                             <  SRR4302536.3599899/94‑1 (MQ=60)

                                                  CCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCAGTTTCCAGTATGATTAATACCTTCGCCTTCCTCAACGCCGGCATTTTAAT                                             <  SRR4302536.6598612/94‑1 (MQ=60)

                                                    GGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCT                                           <  SRR4302536.1002452/94‑1 (MQ=60)

                                                    GGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCT                                           <  SRR4302536.3371910/94‑1 (MQ=60)

                                                      GATGGTGATGGGAAATAGCGCCGATTATTCCAATCTGCCAGTTTCCAGTATGAGTAATACCTTCACCTTCCGCAACGGCGGCATTTTAATCTCT                                         <  SRR4302536.4326564/94‑1 (MQ=60)

                                                       ATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTA                                        >  SRR4302536.1691112/1‑94 (MQ=60)

                                                       ATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTA                                        >  SRR4302536.3167633/1‑94 (MQ=60)

                                                        TGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTAT                                       <  SRR4302536.6925406/94‑1 (MQ=60)

                                                        TGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTAT                                       <  SRR4302536.5911466/94‑1 (MQ=60)

                                                        TGGTGATGGGAAATATCGCCGATTATTGCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTAT                                       <  SRR4302536.339103/94‑1 (MQ=60)

                                                         GGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATC                                      >  SRR4302536.1072529/1‑94 (MQ=60)

                                                         GGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATC                                      <  SRR4302536.5042438/94‑1 (MQ=60)

                                                         GGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATC                                      <  SRR4302536.6482996/94‑1 (MQ=60)

                                                          GTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCT                                     <  SRR4302536.155565/94‑1 (MQ=60)

                                                          GTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCT                                     <  SRR4302536.4044026/94‑1 (MQ=60)

                                                          GTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCT                                     <  SRR4302536.4233458/94‑1 (MQ=60)

                                                           TGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCGCCTTCCTCAACGCCGGCATTTTAATCTCTATCTT                                    <  SRR4302536.4010956/94‑1 (MQ=60)

                                                           TAATGTGAAATATCGCCTATTATTCCAATCTGCCCGTTTCCAGTATGAGTAATCCCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTT                                    <  SRR4302536.4769775/94‑1 (MQ=60)

                                                            GATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTC                                   >  SRR4302536.5882921/1‑94 (MQ=60)

                                                             ATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCC                                  <  SRR4302536.4506810/94‑1 (MQ=60)

                                                              TGGTAAACATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCT                                 <  SRR4302536.4962492/94‑1 (MQ=60)

                                                              TGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCT                                 <  SRR4302536.4564895/94‑1 (MQ=60)

                                                              TGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCT                                 >  SRR4302536.2096590/1‑94 (MQ=60)

                                                               GGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTC                                <  SRR4302536.5517162/94‑1 (MQ=60)

                                                                GGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCA                               >  SRR4302536.2810624/1‑94 (MQ=60)

                                                                GGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCA                               <  SRR4302536.3557073/94‑1 (MQ=60)

                                                                 GAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAA                              >  SRR4302536.5856690/1‑94 (MQ=60)

                                                                   AATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACG                            <  SRR4302536.4644025/94‑1 (MQ=60)

                                                                     TATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCC                          >  SRR4302536.2299038/1‑94 (MQ=60)

                                                                      ATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCT                         <  SRR4302536.447023/94‑1 (MQ=60)

                                                                      ATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCT                         <  SRR4302536.5729452/94‑1 (MQ=60)

                                                                      ATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCT                         <  SRR4302536.5014217/94‑1 (MQ=60)

                                                                      ATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCT                         <  SRR4302536.5829759/94‑1 (MQ=60)

                                                                      ATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCT                         <  SRR4302536.3957694/94‑1 (MQ=60)

                                                                      ATCGCCGATTATTTCAATCGCCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCT                         <  SRR4302536.603940/94‑1 (MQ=60)

                                                                       TCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTG                        <  SRR4302536.554496/94‑1 (MQ=60)

                                                                       TCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTG                        <  SRR4302536.1490916/94‑1 (MQ=60)

                                                                        CGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGG                       >  SRR4302536.3330034/1‑94 (MQ=60)

                                                                         GCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGC                      >  SRR4302536.4175774/1‑94 (MQ=60)

                                                                          CCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCT                     >  SRR4302536.6506770/1‑94 (MQ=60)

                                                                           CGATTATTTCAATCTGCCCGTTTCCAGTATGAGGAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTG                    >  SRR4302536.1667478/1‑94 (MQ=60)

                                                                            GATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGA                   >  SRR4302536.2324055/1‑94 (MQ=60)

                                                                             ATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGAT                  <  SRR4302536.3849166/94‑1 (MQ=60)

                                                                             ATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGAT                  >  SRR4302536.1315333/1‑94 (MQ=60)

                                                                                ATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGA               >  SRR4302536.5991550/1‑94 (MQ=60)

                                                                                ATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGA               <  SRR4302536.1080325/94‑1 (MQ=60)

                                                                                 TTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAA              >  SRR4302536.5830637/1‑94 (MQ=60)

                                                                                 TTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAA              <  SRR4302536.4562128/94‑1 (MQ=60)

                                                                                 TTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAA              <  SRR4302536.1061079/94‑1 (MQ=60)

                                                                                  TTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAA             <  SRR4302536.1989143/94‑1 (MQ=60)

                                                                                   TCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAAT            <  SRR4302536.4097576/94‑1 (MQ=60)

                                                                                   TCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAAT            >  SRR4302536.5303372/1‑94 (MQ=60)

                                                                                    CAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATC           <  SRR4302536.2814904/94‑1 (MQ=60)

                                                                                    CAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATC           >  SRR4302536.3663786/1‑94 (MQ=60)

                                                                                     AATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGACTGGCTGATAGAAATCG          >  SRR4302536.4340223/1‑94 (MQ=60)

                                                                                       TCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTC        >  SRR4302536.862967/1‑94 (MQ=60)

                                                                                        CTGCTCGTTTCCAGTAGGAGTAATACCTTCACTTTCCTCAACGCCGGCATTTTAATCTCTACCTTCCTCAACGCCTGGCTGATGGAAATCGTCC       <  SRR4302536.676803/94‑1 (MQ=60)

                                                                                        CTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGACTGGCTGATGGAAATCGTCC       >  SRR4302536.3221658/1‑94 (MQ=60)

                                                                                         TGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCC      <  SRR4302536.2248946/94‑1 (MQ=60)

                                                                                         TGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCC      <  SRR4302536.1492151/94‑1 (MQ=60)

                                                                                          GCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCG     <  SRR4302536.5940821/94‑1 (MQ=60)

                                                                                          GCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCG     <  SRR4302536.473390/94‑1 (MQ=60)

                                                                                           CCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGT    <  SRR4302536.649977/94‑1 (MQ=60)

                                                                                            CCGTTTCCAGTATGAGTAATGCCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTACCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTT   <  SRR4302536.2228369/94‑1 (MQ=60)

                                                                                            CCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTT   >  SRR4302536.2238030/1‑94 (MQ=60)

                                                                                            CCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTT   <  SRR4302536.2813271/94‑1 (MQ=60)

                                                                                            CCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTT   <  SRR4302536.3098632/94‑1 (MQ=60)

                                                                                             CGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTTG  <  SRR4302536.5409908/94‑1 (MQ=60)

ATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTTG  >  NC_000913/3490234‑3490420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`