Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,525,330 |
T→C |
T408T (ACT→ACC) |
yrfF → |
putative dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,525,330 | 0 | T | C | 97.6%
| 635.7
/ 3.3
| 206 | T408T (ACT→ACC) | yrfF | putative dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (2/3); new base C (94/107); total (96/110) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.79e-01 |
Only 100 of 213 total aligned reads displayed.
AGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATT > NC_000913/3525240‑3525419
|
aGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTc > 1:862339/1‑93 (MQ=255)
aGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTc < 2:1265495/93‑1 (MQ=255)
gCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTcc < 2:1071108/93‑1 (MQ=255)
accaGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGa > 1:10899/1‑93 (MQ=255)
ccaGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGaa > 2:4260947/1‑93 (MQ=255)
ccaGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGaa < 1:4166383/93‑1 (MQ=255)
caGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAAc < 1:3723988/93‑1 (MQ=255)
aGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAAcc > 2:3259603/1‑93 (MQ=255)
aGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAAcc < 1:3786968/93‑1 (MQ=255)
gCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCt < 2:1539310/93‑1 (MQ=255)
cGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTg < 2:4353316/93‑1 (MQ=255)
gTAAAACAACTGGCTGACGCTGTCGTGCGGGTAGGCTATGCATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTgg < 2:1663770/93‑1 (MQ=255)
aaaaCAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTATTATTCGAAACTCCGGAACCTGGAg > 1:3142426/1‑93 (MQ=255)
aaaaCAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAg > 1:3234704/1‑93 (MQ=255)
aacaacTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAgcg > 2:4480232/1‑93 (MQ=255)
acaacTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAgcgc > 1:4134276/1‑93 (MQ=255)
acaacTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAgcgc < 1:3317673/93‑1 (MQ=255)
caacTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGcgcg < 2:657802/93‑1 (MQ=255)
cTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGaaa > 2:467702/1‑93 (MQ=255)
tGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGaaaa < 2:13665/93‑1 (MQ=255)
ggCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAAc > 1:1294736/1‑93 (MQ=255)
gCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAAcc > 1:1871161/1‑93 (MQ=255)
tGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCaa > 1:2588496/1‑93 (MQ=255)
tGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCaa > 1:1716832/1‑93 (MQ=255)
tGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCaa > 1:3947410/1‑93 (MQ=255)
tGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCaa > 2:1781697/1‑93 (MQ=255)
gACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAAt > 1:527656/1‑93 (MQ=255)
gACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAAt < 1:4490764/93‑1 (MQ=255)
gACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAAt < 2:4003255/93‑1 (MQ=255)
aCGCTGGCGTGCGGGTATGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGTGCGCGAAAACCAAtt > 2:4211158/1‑93 (MQ=255)
aCGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAAtt < 1:2664368/93‑1 (MQ=255)
tGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCAcc > 2:1561708/1‑93 (MQ=255)
tGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCAcc > 2:2959750/1‑93 (MQ=255)
ggCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCt > 2:311822/1‑93 (MQ=255)
gCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCtt < 1:1349984/93‑1 (MQ=255)
ggTGGGGGTAGGCGATACATGTCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCttt < 1:1379888/92‑1 (MQ=255)
cGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCttt < 2:51834/93‑1 (MQ=255)
gCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCtttttt < 1:2841110/93‑1 (MQ=255)
gCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCtttttt < 1:3448961/93‑1 (MQ=255)
cGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAGCCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTa < 2:1761086/93‑1 (MQ=255)
cGGGTAGGCAATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCttttttt < 2:2836918/93‑2 (MQ=255)
gggTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTAc > 1:1565141/1‑93 (MQ=255)
gggTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTAc > 1:1783305/1‑93 (MQ=255)
ggTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTAcc < 1:2703526/93‑1 (MQ=255)
ggTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTAcc < 1:4661599/93‑1 (MQ=255)
tAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCCATTAACCTTTTTTATCGt > 2:3818078/1‑93 (MQ=255)
tAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGt > 2:4171493/1‑93 (MQ=255)
aGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACTTTTTTTACCGtt > 1:1521330/1‑93 (MQ=255)
aGGCGAGACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGtt < 2:409297/93‑1 (MQ=255)
gATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGAc > 2:2300283/1‑93 (MQ=255)
gATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGAc < 2:1178798/93‑1 (MQ=255)
gATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGAc > 1:752383/1‑93 (MQ=255)
gATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGAc < 1:1173283/93‑1 (MQ=255)
gATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGAc < 1:1061766/93‑1 (MQ=255)
aTACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACt < 2:77618/93‑1 (MQ=255)
aTACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACt < 2:2874253/93‑1 (MQ=255)
tACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCACGAAAACCAATTCACCTTTTTTACCGTTTGACTg > 2:3939917/1‑93 (MQ=255)
aCATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGc < 1:592266/93‑1 (MQ=255)
cATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCt > 2:3454904/1‑93 (MQ=255)
aTTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGACAACCAATTCACCTTTTTTACCGTTTGACTGCTc > 1:3052940/1‑93 (MQ=255)
aTTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTc < 2:4497442/93‑1 (MQ=255)
aTTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTc > 2:1036860/1‑93 (MQ=255)
ttGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCg > 2:1538570/1‑93 (MQ=255)
ttGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCg > 1:4419507/1‑93 (MQ=255)
ttGCGCATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCg > 2:4724289/1‑93 (MQ=255)
ggTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAg < 1:118292/92‑1 (MQ=255)
ggTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAg < 1:3881164/92‑1 (MQ=255)
tATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGat < 1:4279016/93‑1 (MQ=255)
aTTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGatc > 1:4291051/1‑93 (MQ=255)
tgCGGTACGGGAATTTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGatcatc < 2:239362/92‑1 (MQ=255)
agaggTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTTACTGCTCGCAGatcatc < 2:66569/90‑1 (MQ=255)
gCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCt < 2:1967531/93‑1 (MQ=255)
gTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGa < 2:2019828/93‑1 (MQ=255)
gTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGa > 1:2799754/1‑93 (MQ=255)
gggAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAGCCAATGCACCGTTTTTGCCGTTTGACTGCTCGCAGATCATCTGGAacga < 1:3919686/93‑1 (MQ=255)
gggAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAacga > 2:4748515/1‑93 (MQ=255)
gggAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAacga < 1:1890206/93‑1 (MQ=255)
aaTGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGc > 1:3992445/1‑93 (MQ=255)
aaTGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGc > 2:3693391/1‑93 (MQ=255)
aaTGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGc > 1:721684/1‑93 (MQ=255)
tgtAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGc > 2:2482620/1‑93 (MQ=255)
tgtAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGc > 2:2177295/1‑93 (MQ=255)
tgtAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGc < 1:2291058/93‑1 (MQ=255)
gtAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCt > 1:911485/1‑93 (MQ=255)
gtAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCt < 1:774766/93‑1 (MQ=255)
tAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGCGCCCCGCTc > 1:2635717/1‑93 (MQ=255)
tAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCAACTGGAACGACGCCCGCTc > 1:4541366/1‑93 (MQ=255)
aaTATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCa > 2:4423624/1‑93 (MQ=255)
atatTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCAt < 1:2553350/93‑1 (MQ=255)
atatTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCAt > 1:2237243/1‑93 (MQ=255)
tatTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCAtt < 1:2077852/93‑1 (MQ=255)
atTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTg > 2:2082321/1‑93 (MQ=255)
ttCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGc > 1:3732457/1‑93 (MQ=255)
cGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCa < 1:1128090/93‑1 (MQ=255)
gAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCAt < 2:3547325/93‑1 (MQ=255)
aaCCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCAtt > 1:1756796/1‑93 (MQ=255)
aaCCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCAtt > 1:1483682/1‑93 (MQ=255)
aaCCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCAtt > 2:3327224/1‑93 (MQ=255)
aaCCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCAtt < 1:3854313/93‑1 (MQ=255)
aaCCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCAtt > 2:2647561/1‑93 (MQ=255)
|
AGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATT > NC_000913/3525240‑3525419
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACC > NC_000913/3525239‑3525422
|
AAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTC > SRR4302544.764291/1‑94 (MQ=60)
AAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTC > SRR4302544.870872/1‑94 (MQ=60)
CCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGG > SRR4302544.1819628/1‑94 (MQ=60)
CACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGA > SRR4302544.10998/1‑94 (MQ=60)
CCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAAC < SRR4302544.1114615/94‑1 (MQ=60)
CCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAAC < SRR4302544.4207655/94‑1 (MQ=60)
CAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACC < SRR4302544.3761025/94‑1 (MQ=60)
AGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCT < SRR4302544.2721909/94‑1 (MQ=60)
AGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCT < SRR4302544.3824468/94‑1 (MQ=60)
GCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTG < SRR4302544.3813103/94‑1 (MQ=60)
GCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTG < SRR4302544.1154105/94‑1 (MQ=60)
CGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGG < SRR4302544.892072/94‑1 (MQ=60)
GTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGA > SRR4302544.3476500/1‑94 (MQ=60)
TAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTATTATTCGAAACTCCGGAACCTGGAG > SRR4302544.3172301/1‑94 (MQ=60)
TAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAG < SRR4302544.4330275/94‑1 (MQ=60)
TAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAG > SRR4302544.3265668/1‑94 (MQ=60)
AAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCG < SRR4302544.3869326/94‑1 (MQ=60)
AACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGC > SRR4302544.4175237/1‑94 (MQ=60)
ACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCG < SRR4302544.3349280/94‑1 (MQ=60)
ACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCG < SRR4302544.4021944/94‑1 (MQ=60)
AACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAA > SRR4302544.393653/1‑94 (MQ=60)
TGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAAC > SRR4302544.1307486/1‑94 (MQ=60)
TGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAAC < SRR4302544.1765831/94‑1 (MQ=60)
TGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAAC > SRR4302544.2746555/1‑94 (MQ=60)
GGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACC < SRR4302544.7489/94‑1 (MQ=60)
GGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACC > SRR4302544.1889246/1‑94 (MQ=60)
CTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGACAACAAA > SRR4302544.935433/1‑94 (MQ=60)
CTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAA > SRR4302544.3986633/1‑94 (MQ=60)
CTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAA > SRR4302544.2613401/1‑94 (MQ=60)
CTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAA > SRR4302544.2613400/1‑94 (MQ=60)
CTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAA > SRR4302544.1733709/1‑94 (MQ=60)
TGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAAT > SRR4302544.532893/1‑94 (MQ=60)
TGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAAT < SRR4302544.2044977/94‑1 (MQ=60)
GACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATT < SRR4302544.4535851/94‑1 (MQ=60)
ACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTC < SRR4302544.2689916/94‑1 (MQ=60)
ACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTC < SRR4302544.3486947/94‑1 (MQ=60)
GCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCAC < SRR4302544.565553/94‑1 (MQ=60)
GCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCAC < SRR4302544.1453630/94‑1 (MQ=60)
GCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCAC < SRR4302544.3567112/94‑1 (MQ=60)
CTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACT > SRR4302544.3104927/1‑94 (MQ=60)
CTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACC < SRR4302544.1795586/94‑1 (MQ=60)
GGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTT < SRR4302544.2846660/94‑1 (MQ=60)
GGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGGGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTT > SRR4302544.1284580/1‑94 (MQ=60)
GCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTT < SRR4302544.1497448/94‑1 (MQ=60)
GCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTT < SRR4302544.1363362/94‑1 (MQ=60)
GCGGGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGGATGTGTAATATTCGAACCTCCGGACCCTGGAGCGCGAAAACCAATTCACCTTT > SRR4302544.374037/1‑94 (MQ=60)
ggtggGGGTAGGCGATACATGTCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTT < SRR4302544.1393667/89‑1 (MQ=60)
CGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTT < SRR4302544.4760457/94‑1 (MQ=60)
CGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTT < SRR4302544.1393666/94‑1 (MQ=60)
GTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTT > SRR4302544.847600/1‑94 (MQ=60)
GTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTT < SRR4302544.2756343/94‑1 (MQ=60)
GCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTA > SRR4302544.4642926/1‑94 (MQ=60)
GCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTA < SRR4302544.2868538/94‑1 (MQ=60)
GCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTA < SRR4302544.3481898/94‑1 (MQ=60)
CGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTAC > SRR4302544.1580661/1‑94 (MQ=60)
CGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTAC > SRR4302544.4371676/1‑94 (MQ=60)
CGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTAC > SRR4302544.1800744/1‑94 (MQ=60)
CGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTAC < SRR4302544.1534130/94‑1 (MQ=60)
GGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCG < SRR4302544.2729518/94‑1 (MQ=60)
GGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCG < SRR4302544.4707710/94‑1 (MQ=60)
TAGGCGATGCATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTT < SRR4302544.3046807/94‑1 (MQ=60)
TAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACTTTTTTTACCGTT > SRR4302544.1536427/1‑94 (MQ=60)
TAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTT > SRR4302544.4766065/1‑94 (MQ=60)
TAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTT < SRR4302544.1335232/94‑1 (MQ=60)
TAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTT < SRR4302544.4216123/94‑1 (MQ=60)
AGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTT < SRR4302544.3975623/94‑1 (MQ=60)
CGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGAC > SRR4302544.759732/1‑94 (MQ=60)
GATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACT < SRR4302544.1184988/94‑1 (MQ=60)
GATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACT < SRR4302544.1072320/94‑1 (MQ=60)
TACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGC > SRR4302544.1094543/1‑94 (MQ=60)
ACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCT < SRR4302544.598079/94‑1 (MQ=60)
ACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCT < SRR4302544.4145563/94‑1 (MQ=60)
ACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCT < SRR4302544.2599530/94‑1 (MQ=60)
ACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCGCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCT < SRR4302544.1924955/94‑1 (MQ=60)
CATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGACAACCAATTCACCTTTTTTACCGTTTGACTGCTC > SRR4302544.3082101/1‑94 (MQ=60)
ATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCG > SRR4302544.3184195/1‑94 (MQ=60)
ATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCG > SRR4302544.4464108/1‑94 (MQ=60)
TGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCA > SRR4302544.632601/1‑94 (MQ=60)
GGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGA < SRR4302544.3919705/94‑1 (MQ=60)
GGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGA < SRR4302544.119365/94‑1 (MQ=60)
CGTATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGA > SRR4302544.1580584/1‑94 (MQ=60)
TATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATC > SRR4302544.4334873/1‑94 (MQ=60)
TATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATC < SRR4302544.4322715/94‑1 (MQ=60)
ATTAGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCA < SRR4302544.1908238/94‑1 (MQ=60)
AGCGGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCT < SRR4302544.4196883/94‑1 (MQ=60)
GGTACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGA > SRR4302544.2826731/1‑94 (MQ=60)
ACGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACG < SRR4302544.26777/94‑1 (MQ=60)
CGGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGA > SRR4302544.4103415/1‑94 (MQ=60)
GGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAGCCAATGCACCGTTTTTGCCGTTTGACTGCTCGCAGATCATCTGGAACGAC < SRR4302544.3958617/94‑1 (MQ=60)
GGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGAC > SRR4302544.2481151/1‑94 (MQ=60)
GGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGAC < SRR4302544.4543613/94‑1 (MQ=60)
GGGAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGAC < SRR4302544.1908467/94‑1 (MQ=60)
GAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGC > SRR4302544.4032186/1‑94 (MQ=60)
GAATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGC > SRR4302544.728793/1‑94 (MQ=60)
AATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCC > SRR4302544.1192492/1‑94 (MQ=60)
AATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCC < SRR4302544.99085/94‑1 (MQ=60)
ATGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCC < SRR4302544.3898274/94‑1 (MQ=60)
TGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCG < SRR4302544.2282851/94‑1 (MQ=60)
TGTGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCG < SRR4302544.3334761/94‑1 (MQ=60)
TGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCT < SRR4302544.2312654/94‑1 (MQ=60)
TGTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCT > SRR4302544.920497/1‑94 (MQ=60)
GTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGcgccccgctc > SRR4302544.2660981/1‑84 (MQ=60)
GTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTC < SRR4302544.782290/94‑1 (MQ=60)
GTAATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCAACTGGAACGACGCCCGCTC > SRR4302544.4586754/1‑94 (MQ=60)
AATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCAT > SRR4302544.2258287/1‑94 (MQ=60)
AATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCAT > SRR4302544.2258285/1‑94 (MQ=60)
ATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATT < SRR4302544.1690868/94‑1 (MQ=60)
ATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATT < SRR4302544.2577864/94‑1 (MQ=60)
ATATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATT < SRR4302544.3763503/94‑1 (MQ=60)
TATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTG < SRR4302544.2097823/94‑1 (MQ=60)
ATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGC > SRR4302544.450320/1‑94 (MQ=60)
ATTCGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGC > SRR4302544.3769568/1‑94 (MQ=60)
CGAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCAT < SRR4302544.1139337/94‑1 (MQ=60)
GAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATT > SRR4302544.1773989/1‑94 (MQ=60)
GAACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATT > SRR4302544.1498341/1‑94 (MQ=60)
AACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTA > SRR4302544.3478803/1‑94 (MQ=60)
AACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTA < SRR4302544.3892572/94‑1 (MQ=60)
AACCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTAGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTA > SRR4302544.1230161/1‑94 (MQ=60)
CCTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACC > SRR4302544.1988805/1‑94 (MQ=60)
|
AAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACC > NC_000913/3525239‑3525422
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
