Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,056,373 |
A→G |
K129K (AAA→AAG) |
yihK → |
putative GTP‑binding factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,056,373 | 0 | A | G | 98.3%
| 556.5
/ ‑1.0
| 177 | K129K (AAA→AAG) | yihK | putative GTP‑binding factor |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base G (69/105); total (70/107) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.58e-01 |
Only 100 of 185 total aligned reads displayed.
TGACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAA‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTGG > NC_000913/4056283‑4056461
|
gACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑Gtt > 2:4547165/1‑93 (MQ=255)
gACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑Gtt < 2:2889041/93‑1 (MQ=255)
gACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑Gtt < 2:3013247/93‑1 (MQ=255)
gACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑Gtt < 2:3119165/93‑1 (MQ=255)
aCGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTg < 1:3730007/93‑1 (MQ=255)
cGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGa < 2:3914028/93‑1 (MQ=255)
gCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGAc > 1:2409579/1‑93 (MQ=255)
gCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGAc < 2:1338418/93‑1 (MQ=255)
gCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGAc > 1:1094029/1‑93 (MQ=255)
gCAGTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGAc < 1:3582153/93‑1 (MQ=255)
aTTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCg < 2:3477400/93‑1 (MQ=255)
tttGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGc > 2:4435986/1‑93 (MQ=255)
tGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGccc > 1:4411695/1‑93 (MQ=255)
gACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCt < 1:1725792/93‑1 (MQ=255)
aCGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAGCAAG‑GTTGACCGCCCTg > 2:2075788/1‑93 (MQ=255)
aCGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTg < 2:3578381/93‑1 (MQ=255)
aCGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTg < 1:2752998/93‑1 (MQ=255)
aCGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTAT‑AACAAAGGTTGACCGCCCTg > 1:3984918/1‑93 (MQ=255)
ccGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGgcgcg < 2:2607560/93‑1 (MQ=255)
cGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGgcgcgc > 2:2421259/1‑93 (MQ=255)
gATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGcgcgcg > 1:4436476/1‑93 (MQ=255)
gATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGcgcgcg > 2:3535219/1‑93 (MQ=255)
aTGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGt < 2:3949411/93‑1 (MQ=255)
aTGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGt > 1:553038/1‑93 (MQ=255)
tGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTc < 1:2346507/93‑1 (MQ=255)
tGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTc < 1:2222749/93‑1 (MQ=255)
gCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGa < 2:1118065/93‑1 (MQ=255)
cAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGAt < 2:3911588/93‑1 (MQ=255)
cAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGGTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGAt > 2:1918231/1‑93 (MQ=255)
aaaCGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGGTATCAACAAG‑GTTGACCGCCCCGGCCCGCGCCCTGAtg > 1:1017936/1‑92 (MQ=255)
aaCGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTg < 1:1044905/93‑1 (MQ=255)
aaCGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTg < 1:627105/93‑1 (MQ=255)
aaCGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTg > 1:4233150/1‑93 (MQ=255)
cgcgCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTggg > 2:3786329/1‑93 (MQ=255)
gcgcTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGt > 1:3833907/1‑93 (MQ=255)
gcgcTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGt < 2:2025027/93‑1 (MQ=255)
cgcTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGtt < 2:941260/93‑1 (MQ=255)
cgcTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGtt < 1:1672707/93‑1 (MQ=255)
gcTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTtg > 2:1960842/1‑93 (MQ=255)
cTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTtgt > 1:29705/1‑93 (MQ=255)
cTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTtgt < 2:1179671/93‑1 (MQ=255)
ttCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTtgtg > 2:3258160/1‑93 (MQ=255)
cGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGTCCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGa < 1:688634/93‑1 (MQ=255)
aCCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAg < 1:3547220/93‑1 (MQ=255)
aCCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAg > 1:3319811/1‑93 (MQ=255)
aCCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCACCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAg < 1:3597796/93‑1 (MQ=255)
ccAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATGAgg > 2:2575346/1‑93 (MQ=255)
ccAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAgg < 1:3181992/93‑1 (MQ=255)
ccAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAgg < 2:3038922/93‑1 (MQ=255)
aaaaaaGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGGGCGTCCTGATTGTGTTGTGGGTCAggca > 1:3208419/1‑91 (MQ=255)
aaaaaGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTAt > 2:2511296/1‑93 (MQ=255)
aaaaGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTAtt < 1:3664190/93‑1 (MQ=255)
aaaaGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTAtt < 2:420353/93‑1 (MQ=255)
aaaaGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTAtt < 1:1946348/93‑1 (MQ=255)
aaaaGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTAtt < 1:4636171/93‑1 (MQ=255)
aaaGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTc < 1:50104/93‑1 (MQ=255)
aaaGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTc < 2:4616102/93‑1 (MQ=255)
aaGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCg < 2:1396904/93‑1 (MQ=255)
aGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGa < 1:3321642/93‑1 (MQ=255)
gCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGAt > 2:2687343/1‑93 (MQ=255)
gCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGAt > 2:1451794/1‑93 (MQ=255)
cGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATc < 1:1262869/93‑1 (MQ=255)
cGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATc < 2:3927755/93‑1 (MQ=255)
gTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCt > 2:2656960/1‑93 (MQ=255)
ttGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGt > 2:626663/1‑93 (MQ=255)
tGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGtt < 2:4261738/93‑1 (MQ=255)
cTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCg < 1:3321737/93‑1 (MQ=255)
ttACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGt < 1:279995/93‑1 (MQ=255)
tACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGtt < 1:2712476/93‑1 (MQ=255)
tACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGtt < 2:3756893/93‑1 (MQ=255)
aCGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTa > 1:3006293/1‑93 (MQ=255)
ggCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAAc > 1:3765736/1‑93 (MQ=255)
gCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAAcc < 2:3011323/93‑1 (MQ=255)
gCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAAcc > 1:2320529/1‑93 (MQ=255)
gcTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCt < 2:1017996/92‑1 (MQ=255)
cTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTc > 2:1134655/1‑93 (MQ=255)
cTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTc > 2:1540351/1‑93 (MQ=255)
cTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTc > 2:170400/1‑93 (MQ=255)
tGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCg > 1:2205207/1‑93 (MQ=255)
gAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGa < 2:1289537/93‑1 (MQ=255)
gAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATATGTTCGTTAACCCCGa > 1:2568686/1‑93 (MQ=255)
aGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGAcg > 1:2379542/1‑93 (MQ=255)
gCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGAcgc < 1:4307452/93‑1 (MQ=255)
gCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGAcgc < 2:4113087/93‑1 (MQ=255)
gATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGcgac < 2:1322037/93‑1 (MQ=255)
gATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGcgac < 1:1789816/93‑1 (MQ=255)
ttgttgTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGcgaccg < 1:2712473/93‑1 (MQ=255)
ttgttgTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGcgaccg > 1:4347032/1‑93 (MQ=255)
ttgttgTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGcgaccg > 2:2922931/1‑93 (MQ=255)
tgttgtTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGcgaccga < 2:5683/93‑1 (MQ=255)
gttgttATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGcgaccgag > 1:213312/1‑92 (MQ=255)
gttgttATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGcgaccgac > 1:3472508/1‑93 (MQ=255)
ttgttATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACcgacg < 1:1520724/93‑1 (MQ=255)
tCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGagcagc < 2:4640166/93‑1 (MQ=255)
caacaaG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCt > 2:89841/1‑93 (MQ=255)
caacaaG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCt < 2:918242/93‑1 (MQ=255)
aacaaG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTg < 1:1613048/93‑1 (MQ=255)
aacaaG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTg < 2:2625539/93‑1 (MQ=255)
aacaaA‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTg < 1:4136924/93‑1 (MQ=255)
acaaG‑GTTGACCGCCCTGGCGCGCATCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTgg < 2:3235678/93‑1 (MQ=255)
|
TGACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAA‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTGG > NC_000913/4056283‑4056461
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTGACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAA‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTGGACTTC > NC_000913/4056281‑4056466
|
GTTGACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑G < SRR4302544.3675642/94‑1 (MQ=60)
TGACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTT < SRR4302544.3658485/94‑1 (MQ=60)
TGACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTT < SRR4302544.379636/94‑1 (MQ=60)
GACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTG < SRR4302544.695113/94‑1 (MQ=60)
GACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTG < SRR4302544.327307/94‑1 (MQ=60)
GACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTG < SRR4302544.4337128/94‑1 (MQ=60)
ACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGA < SRR4302544.543346/94‑1 (MQ=60)
ACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGA < SRR4302544.3767092/94‑1 (MQ=60)
CGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGAC > SRR4302544.2432473/1‑94 (MQ=60)
CGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGAC > SRR4302544.1104916/1‑94 (MQ=60)
CGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGAC > SRR4302544.2432474/1‑94 (MQ=60)
GCAGTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACC < SRR4302544.3616522/94‑1 (MQ=60)
TTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCC > SRR4302544.4456237/1‑94 (MQ=60)
TGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCT > SRR4302544.3231000/1‑94 (MQ=60)
GACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTG < SRR4302544.1742725/94‑1 (MQ=60)
GACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTAT‑AACAAAGGTTGACCGCCCTG > SRR4302544.4024582/1‑94 (MQ=60)
ACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGG < SRR4302544.2779504/94‑1 (MQ=60)
CGGCCCGATGCCGCAAACGCGCTTCCTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTCTAAACAAG‑GTTGACCGCCCTCGC > SRR4302544.3619399/1‑94 (MQ=60)
CCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCG < SRR4302544.2400003/94‑1 (MQ=60)
CGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCG < SRR4302544.2757895/94‑1 (MQ=60)
CGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCG > SRR4302544.4067392/1‑94 (MQ=60)
CGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCG > SRR4302544.4481217/1‑94 (MQ=60)
GATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGT > SRR4302544.558447/1‑94 (MQ=60)
GATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGC > SRR4302544.3513567/1‑94 (MQ=60)
ATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTC > SRR4302544.78381/1‑94 (MQ=60)
TGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCC < SRR4302544.2368740/94‑1 (MQ=60)
TGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCC < SRR4302544.2243659/94‑1 (MQ=60)
CGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGT > SRR4302544.3847501/1‑94 (MQ=60)
CAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGGTATCAACAAG‑GTTGACCGCCCCGGCCCGCGCCCTGATG > SRR4302544.1028099/1‑94 (MQ=60)
AAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTG > SRR4302544.4276283/1‑94 (MQ=60)
AAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTG < SRR4302544.3588933/94‑1 (MQ=60)
AACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGG < SRR4302544.633273/94‑1 (MQ=60)
AACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGG < SRR4302544.3361994/94‑1 (MQ=60)
AACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGG < SRR4302544.1055267/94‑1 (MQ=60)
AACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGG < SRR4302544.2229060/94‑1 (MQ=60)
CGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGT > SRR4302544.3871920/1‑94 (MQ=60)
CGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGT > SRR4302544.1131244/1‑94 (MQ=60)
CGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTG < SRR4302544.1689190/94‑1 (MQ=60)
GCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACGGCCCTGGCGCGCGTCCTGATTGGGTTGG > SRR4302544.29987/1‑94 (MQ=60)
GCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGT > SRR4302544.29986/1‑94 (MQ=60)
CTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTG > SRR4302544.2319070/1‑94 (MQ=60)
CGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGTCCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGAT < SRR4302544.695492/94‑1 (MQ=60)
CGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGAT < SRR4302544.1062754/94‑1 (MQ=60)
TAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCA > SRR4302544.2524266/1‑94 (MQ=60)
AACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAG > SRR4302544.3351440/1‑94 (MQ=60)
ACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGG < SRR4302544.3581190/94‑1 (MQ=60)
ACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCACCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGG < SRR4302544.3632456/94‑1 (MQ=60)
ACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAA‑GTTGACCGCCCTGGAGCGCGTCCTGATTGGGTTGTGGATAAGG > SRR4302544.1599395/1‑94 (MQ=60)
CCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGT < SRR4302544.3212273/94‑1 (MQ=60)
CAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGGGCGTCCTGATTGTGTTGTGGGTCAGGCA > SRR4302544.3239021/1‑94 (MQ=60)
CAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTAT < SRR4302544.1644737/94‑1 (MQ=60)
AAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATT < SRR4302544.131384/94‑1 (MQ=60)
AAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTC > SRR4302544.2706951/1‑94 (MQ=60)
AAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTC < SRR4302544.3700732/94‑1 (MQ=60)
AAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTC < SRR4302544.1965195/94‑1 (MQ=60)
AAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTC < SRR4302544.4682106/94‑1 (MQ=60)
AAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTC > SRR4302544.3092811/1‑94 (MQ=60)
AAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCG < SRR4302544.50610/94‑1 (MQ=60)
AGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGAT < SRR4302544.3353282/94‑1 (MQ=60)
CGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCT < SRR4302544.4020514/94‑1 (MQ=60)
CGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCT < SRR4302544.1275295/94‑1 (MQ=60)
GTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTG > SRR4302544.4206306/1‑94 (MQ=60)
TTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTT > SRR4302544.4560502/1‑94 (MQ=60)
TGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTC < SRR4302544.1783852/94‑1 (MQ=60)
CTTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGT < SRR4302544.3353378/94‑1 (MQ=60)
TTACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTT < SRR4302544.282920/94‑1 (MQ=60)
TACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTA > SRR4302544.3035112/1‑94 (MQ=60)
TACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTA < SRR4302544.2738570/94‑1 (MQ=60)
TACGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTA < SRR4302544.2738569/94‑1 (MQ=60)
CGGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAAC > SRR4302544.3803090/1‑94 (MQ=60)
GGCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACC > SRR4302544.2342509/1‑94 (MQ=60)
GCCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCT < SRR4302544.4396342/94‑1 (MQ=60)
CCTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTC > SRR4302544.4478393/1‑94 (MQ=60)
CTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCG > SRR4302544.2225971/1‑94 (MQ=60)
CTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCG > SRR4302544.2225970/1‑94 (MQ=60)
CTGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCG > SRR4302544.4728984/1‑94 (MQ=60)
TGAAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATATGTTCGTTAACCCCGA > SRR4302544.2593364/1‑94 (MQ=60)
AAGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACG > SRR4302544.2402074/1‑94 (MQ=60)
AGCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGC > SRR4302544.1905971/1‑94 (MQ=60)
GCCGATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCG < SRR4302544.4351369/94‑1 (MQ=60)
GATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACC < SRR4302544.1807313/94‑1 (MQ=60)
GATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACC < SRR4302544.3353350/94‑1 (MQ=60)
GATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACC < SRR4302544.2992175/94‑1 (MQ=60)
ATTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCG > SRR4302544.4391215/1‑94 (MQ=60)
TTGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGA < SRR4302544.2738567/94‑1 (MQ=60)
TGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGAG > SRR4302544.215503/1‑94 (MQ=60)
TGTTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGAC > SRR4302544.3505625/1‑94 (MQ=60)
TTGTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGA < SRR4302544.1535818/94‑1 (MQ=60)
GTTATCAACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGC < SRR4302544.2022884/94‑1 (MQ=60)
AACAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTGG < SRR4302544.1628949/94‑1 (MQ=60)
AACAAA‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTGG < SRR4302544.4177901/94‑1 (MQ=60)
CAAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTGGAC > SRR4302544.39957/1‑94 (MQ=60)
AAG‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTGGACT > SRR4302544.2269997/1‑94 (MQ=60)
G‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTGGACTTC > SRR4302544.1493333/1‑94 (MQ=60)
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GTTGACGCATTTGACGGCCCGATGCCGCAAACGCGCTTCGTAACCAAAAAAGCGTTTGCTTACGGCCTGAAGCCGATTGTTGTTATCAACAAA‑GTTGACCGCCCTGGCGCGCGTCCTGATTGGGTTGTGGATCAGGTATTCGATCTGTTCGTTAACCTCGACGCGACCGACGAGCAGCTGGACTTC > NC_000913/4056281‑4056466
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
