Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,060,112 |
A→G |
Y96C (TAT→TGT) |
yihN → |
putative resistance protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,060,112 | 0 | A | G | 99.0%
| 610.4
/ ‑3.5
| 196 | Y96C (TAT→TGT) | yihN | putative resistance protein |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (87/107); total (88/108) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.27e-01 |
Only 100 of 207 total aligned reads displayed.
TTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTG > NC_000913/4060022‑4060200
|
ttGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGtt < 1:84559/93‑1 (MQ=255)
ttGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGtt > 2:3597288/1‑93 (MQ=255)
tGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTg < 2:4564752/93‑1 (MQ=255)
gCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTgg < 1:278296/93‑1 (MQ=255)
gCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTgg < 1:3454142/93‑1 (MQ=255)
gCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTgg > 1:1804870/1‑93 (MQ=255)
ccGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTggg > 1:2660187/1‑93 (MQ=255)
cGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTgggg < 2:434590/93‑1 (MQ=255)
gATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACCATGCCGGGGTGTTgggga > 1:652908/1‑92 (MQ=255)
gATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGc > 2:146922/1‑93 (MQ=255)
gATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGc > 1:2476412/1‑93 (MQ=255)
tAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCAt < 2:529299/93‑1 (MQ=255)
tAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCAt > 1:3806433/1‑93 (MQ=255)
aaaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATc < 1:833449/93‑1 (MQ=255)
aaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATcc > 2:1366853/1‑93 (MQ=255)
aaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATcc < 2:106632/93‑1 (MQ=255)
aaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATcc > 2:1945786/1‑93 (MQ=255)
aaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATcc < 1:4586227/93‑1 (MQ=255)
cTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCctc < 1:3956580/93‑1 (MQ=255)
tACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCctct < 1:1526908/93‑1 (MQ=255)
aCCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCtt < 1:158525/93‑1 (MQ=255)
ccGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCttt < 1:2328717/93‑1 (MQ=255)
gcgcAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGt < 1:1673268/93‑1 (MQ=255)
gcgcAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGt > 1:2928171/1‑93 (MQ=255)
gcgcAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGt > 1:31842/1‑93 (MQ=255)
cAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTg > 2:2596180/1‑93 (MQ=255)
cAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTg < 2:1913989/93‑1 (MQ=255)
cAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTg < 1:118653/93‑1 (MQ=255)
aGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTgg > 2:4370207/1‑93 (MQ=255)
aGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTgg < 1:3513406/93‑1 (MQ=255)
gATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTggg > 1:3123904/1‑93 (MQ=255)
gATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTggg > 2:3049029/1‑93 (MQ=255)
acacCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGgcgc < 2:274908/93‑1 (MQ=255)
acacCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGgcgc > 1:2561264/1‑93 (MQ=255)
cacCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCt < 2:2511916/93‑1 (MQ=255)
cacCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCt < 2:3704155/93‑1 (MQ=255)
cATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAtt < 1:1563603/93‑1 (MQ=255)
aTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAttt < 1:2319080/93‑1 (MQ=255)
aTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAttt < 2:4709585/93‑1 (MQ=255)
aTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAttt > 1:792917/1‑93 (MQ=255)
tGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTg > 2:2411990/1‑93 (MQ=255)
tGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTg > 1:1749164/1‑93 (MQ=255)
tGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTg < 1:721910/93‑1 (MQ=255)
tCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGc < 2:3302760/93‑1 (MQ=255)
cATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCg > 1:2993304/1‑93 (MQ=255)
cATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCg > 1:2012814/1‑93 (MQ=255)
ctcactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTAc < 2:3573126/93‑1 (MQ=255)
ctcactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTAc < 2:3794026/93‑1 (MQ=255)
tcactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACt > 2:1816553/1‑93 (MQ=255)
cactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACtt < 2:110901/93‑1 (MQ=255)
actcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTTTCTGGGCGCTATTTGGCGTTACTTg > 1:1459688/1‑93 (MQ=255)
actcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTg < 1:4370413/93‑1 (MQ=255)
actcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTg > 2:4140380/1‑93 (MQ=255)
actcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTg > 2:1769453/1‑93 (MQ=255)
tcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCg > 2:2806966/1‑93 (MQ=255)
caTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGa > 1:4066883/1‑93 (MQ=255)
tGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACat > 2:4643305/1‑93 (MQ=255)
cGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatga < 1:4447625/93‑1 (MQ=255)
gACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatgat < 2:1998550/93‑1 (MQ=255)
gACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatgat > 2:2083062/1‑93 (MQ=255)
gACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatgat < 1:1600043/93‑1 (MQ=255)
aCAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatgatg < 1:3569361/93‑1 (MQ=255)
aCAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatgatg > 1:1088835/1‑93 (MQ=255)
aCAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGAATCCTCTTTGTCTGGGCGCTATTTGGGGTTCCTTGCGACctgatg > 1:1088837/1‑93 (MQ=255)
aGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGaa < 1:1383348/93‑1 (MQ=255)
aGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGaa < 1:4588081/93‑1 (MQ=255)
aGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGaa > 2:29496/1‑93 (MQ=255)
ggATTACTGGGTGTTTATTTGACTACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAc > 1:750544/1‑93 (MQ=255)
ggATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAc > 1:1983383/1‑93 (MQ=255)
ggATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAc < 2:4535005/93‑1 (MQ=255)
gATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACt > 2:4027269/1‑93 (MQ=255)
aTTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTg > 1:2691676/1‑93 (MQ=255)
aTTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTg < 1:2873638/93‑1 (MQ=255)
aTTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTg < 1:359665/93‑1 (MQ=255)
tACTGGGTGGTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGc > 2:223392/1‑93 (MQ=255)
gggTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGt > 2:2098210/1‑93 (MQ=255)
ggTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTc > 2:692295/1‑93 (MQ=255)
gtgtTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCt < 2:4496659/93‑1 (MQ=255)
tgtTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCtt < 2:3506010/93‑1 (MQ=255)
gtTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTCCTTGCGACATGATGAACTGGCCGTTCttc > 1:3676241/1‑92 (MQ=255)
gtTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTg < 1:982405/93‑1 (MQ=255)
aTTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCa < 2:618239/93‑1 (MQ=255)
tttGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCaa < 1:504039/93‑1 (MQ=255)
tttGACGACAATACCGGAGTGTTGGGGCATCCTCTTTGTCTGGGCGCTGTTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCaa < 2:3199733/93‑1 (MQ=255)
ttGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAg < 1:2232087/93‑1 (MQ=255)
gacgacAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTc < 1:3345785/93‑1 (MQ=255)
gacAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGt > 2:3121616/1‑93 (MQ=255)
cAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTaa > 2:3418404/1‑93 (MQ=255)
cAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTaa < 2:3194167/93‑1 (MQ=255)
aaTGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAg < 1:2391389/93‑1 (MQ=255)
gCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCg > 1:3310551/1‑93 (MQ=255)
ccGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGa < 2:3488978/93‑1 (MQ=255)
ccGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGa < 2:616448/93‑1 (MQ=255)
cGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAt < 2:4051544/93‑1 (MQ=255)
cGGCGTAATGGGGGATCCTCTTTGTCTGGGCGCTATTTGGCGTTACGTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAt < 1:1626393/93‑1 (MQ=255)
ggggTGTTGGGGCCCCATCTTTGACTGGGCGCTATTTGGCGATACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAtt < 1:4195847/93‑1 (MQ=255)
ggggTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAtt < 2:3638750/93‑1 (MQ=255)
ggggTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAtt > 2:22670/1‑93 (MQ=255)
gggTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTg < 1:4558560/93‑1 (MQ=255)
gggTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTg < 2:1586463/93‑1 (MQ=255)
|
TTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTG > NC_000913/4060022‑4060200
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGGCAA > NC_000913/4060021‑4060205
|
TTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTT < SRR4302544.515731/94‑1 (MQ=60)
TTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTG < SRR4302544.85362/94‑1 (MQ=60)
TGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGG > SRR4302544.1822504/1‑94 (MQ=60)
TGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGG < SRR4302544.4129089/94‑1 (MQ=60)
GCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGG < SRR4302544.3487116/94‑1 (MQ=60)
GCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGG < SRR4302544.281202/94‑1 (MQ=60)
GCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGG > SRR4302544.2685700/1‑94 (MQ=60)
GCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGG < SRR4302544.4080141/94‑1 (MQ=60)
CCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGG > SRR4302544.295056/1‑94 (MQ=60)
CCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGG < SRR4302544.1548965/94‑1 (MQ=60)
CGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACCATGCCGGGGTGTTGGGGA > SRR4302544.659373/1‑94 (MQ=60)
CGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGC > SRR4302544.2500098/1‑94 (MQ=60)
CGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGC > SRR4302544.659374/1‑94 (MQ=60)
CGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGGGTTGGGGC > SRR4302544.3223333/1‑94 (MQ=60)
ATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCAT < SRR4302544.73744/94‑1 (MQ=60)
ATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCAT > SRR4302544.3844153/1‑94 (MQ=60)
AAACTACCGCGCAGATACACCATTTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCC > SRR4302544.843987/1‑94 (MQ=60)
AAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCC < SRR4302544.841653/94‑1 (MQ=60)
AACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCT < SRR4302544.4631885/94‑1 (MQ=60)
CTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCT < SRR4302544.3995918/94‑1 (MQ=60)
CTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCT > SRR4302544.4421466/1‑94 (MQ=60)
TACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTT < SRR4302544.1542067/94‑1 (MQ=60)
ACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTT < SRR4302544.160076/94‑1 (MQ=60)
CCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTG < SRR4302544.2350796/94‑1 (MQ=60)
CCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTG < SRR4302544.4685341/94‑1 (MQ=60)
CGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGT < SRR4302544.2486018/94‑1 (MQ=60)
CGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGT > SRR4302544.32152/1‑94 (MQ=60)
CGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGT > SRR4302544.134830/1‑94 (MQ=60)
CGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGT > SRR4302544.2956311/1‑94 (MQ=60)
GCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTC < SRR4302544.1689753/94‑1 (MQ=60)
GCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTG < SRR4302544.3591031/94‑1 (MQ=60)
CAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGG < SRR4302544.119728/94‑1 (MQ=60)
CAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGG > SRR4302544.1140366/1‑94 (MQ=60)
AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGG < SRR4302544.3546931/94‑1 (MQ=60)
AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGG > SRR4302544.1466315/1‑94 (MQ=60)
AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGG > SRR4302544.3153598/1‑94 (MQ=60)
AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGG > SRR4302544.4633654/1‑94 (MQ=60)
ATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCC > SRR4302544.350234/1‑94 (MQ=60)
TACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGC > SRR4302544.3770342/1‑94 (MQ=60)
TACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGC > SRR4302544.2585868/1‑94 (MQ=60)
TACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGC > SRR4302544.2585867/1‑94 (MQ=60)
CCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATT < SRR4302544.1697013/94‑1 (MQ=60)
CCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGCGTTGGGGCATCCTCTTTGTCTGGGCGCTATT > SRR4302544.4617418/1‑94 (MQ=60)
CATGTCATTCTCGCTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTT < SRR4302544.4245310/94‑1 (MQ=60)
CATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTT < SRR4302544.1579115/94‑1 (MQ=60)
CATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTT < SRR4302544.1579117/94‑1 (MQ=60)
CATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTT > SRR4302544.800593/1‑94 (MQ=60)
ATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTG > SRR4302544.1766288/1‑94 (MQ=60)
ATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTG < SRR4302544.2341041/94‑1 (MQ=60)
ATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTG < SRR4302544.3173065/94‑1 (MQ=60)
TGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGG < SRR4302544.729020/94‑1 (MQ=60)
TCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCG > SRR4302544.2032378/1‑94 (MQ=60)
TCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCG > SRR4302544.3022007/1‑94 (MQ=60)
ATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGAGCGCTATTTGGCGTT < SRR4302544.45508/94‑1 (MQ=60)
TCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTAC > SRR4302544.3047420/1‑94 (MQ=60)
CACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTTTCTGGGCGCTATTTGGCGTTACTTG > SRR4302544.1474178/1‑94 (MQ=60)
ACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGC < SRR4302544.4414730/94‑1 (MQ=60)
TCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGA < SRR4302544.3371360/94‑1 (MQ=60)
TCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGA > SRR4302544.4107370/1‑94 (MQ=60)
GCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGA > SRR4302544.36726/1‑94 (MQ=60)
CGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGAT < SRR4302544.4492437/94‑1 (MQ=60)
GACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATG > SRR4302544.1099663/1‑94 (MQ=60)
GACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATG < SRR4302544.1615820/94‑1 (MQ=60)
GACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATG > SRR4302544.1099662/1‑94 (MQ=60)
GACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGAATCCTCTTTGTCTGGGCGCTATTTGGGGTTCCTTGCGACCTGATG > SRR4302544.1099664/1‑94 (MQ=60)
ACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGA < SRR4302544.3603587/94‑1 (MQ=60)
AGGATTACTGGGTGTTTATTTGACTACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAC > SRR4302544.757877/1‑94 (MQ=60)
AGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAC < SRR4302544.4633748/94‑1 (MQ=60)
AGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAC < SRR4302544.3482992/94‑1 (MQ=60)
AGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAC > SRR4302544.2002642/1‑94 (MQ=60)
AGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAC < SRR4302544.1397167/94‑1 (MQ=60)
GGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACT < SRR4302544.2408649/94‑1 (MQ=60)
GATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTG < SRR4302544.947509/94‑1 (MQ=60)
GATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTG > SRR4302544.2717495/1‑94 (MQ=60)
ATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGG < SRR4302544.1667847/94‑1 (MQ=60)
ATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGG < SRR4302544.363347/94‑1 (MQ=60)
ATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGG < SRR4302544.2901377/94‑1 (MQ=60)
TTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGC > SRR4302544.3624825/1‑94 (MQ=60)
ACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCG > SRR4302544.1969334/1‑94 (MQ=60)
CTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGG > SRR4302544.1534257/1‑94 (MQ=60)
CTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGG > SRR4302544.798300/1‑94 (MQ=60)
GGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCT > SRR4302544.2135948/1‑94 (MQ=60)
GTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTT > SRR4302544.2688142/1‑94 (MQ=60)
GTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTT < SRR4302544.2533839/94‑1 (MQ=60)
GTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTT < SRR4302544.2327046/94‑1 (MQ=60)
TGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTCCTTGCGACATGATGAACTGGCCGTTCTTC > SRR4302544.3712906/1‑94 (MQ=60)
GTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGC < SRR4302544.992035/94‑1 (MQ=60)
TTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAG < SRR4302544.508991/94‑1 (MQ=60)
TTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGT < SRR4302544.1604073/94‑1 (MQ=60)
TTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGT < SRR4302544.2253083/94‑1 (MQ=60)
TTGACGACAATGCCGGGGTGTTGGGGCATCCTCGTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGT < SRR4302544.4618795/94‑1 (MQ=60)
GACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCG < SRR4302544.2981164/94‑1 (MQ=60)
GACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCG < SRR4302544.1624371/94‑1 (MQ=60)
GACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCG < SRR4302544.3377699/94‑1 (MQ=60)
GACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACCTGCGACATGATGCACTGGCCGGTCTTGCTCAAGTCG < SRR4302544.828803/94‑1 (MQ=60)
GACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTA > SRR4302544.3285938/1‑94 (MQ=60)
CAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAG < SRR4302544.579320/94‑1 (MQ=60)
CAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAG < SRR4302544.289728/94‑1 (MQ=60)
AATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGT < SRR4302544.2414043/94‑1 (MQ=60)
TGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCG > SRR4302544.3342081/1‑94 (MQ=60)
CCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAT < SRR4302544.3943171/94‑1 (MQ=60)
CGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATT > SRR4302544.2114643/1‑94 (MQ=60)
CGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATT > SRR4302544.235141/1‑94 (MQ=60)
CGGCGTAATGGGGGATCCTCTTTGTCTGGGCGCTATTTGGCGTTACGTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATT < SRR4302544.1642415/94‑1 (MQ=60)
GGGGTGTTGGGGCCCCATCTTTGACTGGGCGCTATTTGGCGATACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTG < SRR4302544.4237515/94‑1 (MQ=60)
GGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGGCTTGCTCAAGTCGGTAAGTCGATTG > SRR4302544.1778724/1‑94 (MQ=60)
GGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG < SRR4302544.4604033/94‑1 (MQ=60)
GGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG < SRR4302544.2020699/94‑1 (MQ=60)
GGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG < SRR4302544.2755041/94‑1 (MQ=60)
TGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGGCA < SRR4302544.1546386/94‑1 (MQ=60)
GTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGGCAA < SRR4302544.2261527/94‑1 (MQ=60)
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TTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGGCAA > NC_000913/4060021‑4060205
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
