Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,060,112	A→G	Y96C (TAT→TGT)	yihN →	putative resistance protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,060,112	0	A	G	99.6%	868.7 / ‑4.8	273	Y96C (TAT→TGT)	yihN	putative resistance protein
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (134/138); total (134/139)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.62e-01

Only 100 of 278 total aligned reads displayed.

TTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG  >  NC_000913/4060022‑4060201

ttGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGtt                                                                                         >  1:4250797/1‑93 (MQ=255)

 tGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTg                                                                                        <  1:4169784/93‑1 (MQ=255)

 tGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTg                                                                                        <  1:6225816/93‑1 (MQ=255)

  gCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTgg                                                                                       <  1:4864091/93‑1 (MQ=255)

  gCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTgg                                                                                       <  2:5251526/93‑1 (MQ=255)

   ccGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTggg                                                                                      <  2:5552566/93‑1 (MQ=255)

   ccGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTggg                                                                                      >  2:22914/1‑93 (MQ=255)

   ccGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTggg                                                                                      <  1:2288750/93‑1 (MQ=255)

    cGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTgggg                                                                                     >  1:2905722/1‑93 (MQ=255)

     gATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGc                                                                                    >  2:4352386/1‑93 (MQ=255)

     gATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGc                                                                                    >  2:5733852/1‑93 (MQ=255)

     gATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGc                                                                                    >  1:2181897/1‑93 (MQ=255)

       tAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCAt                                                                                  >  1:6154662/1‑93 (MQ=255)

         aaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATcc                                                                                >  2:3974494/1‑93 (MQ=255)

         aaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATcc                                                                                >  2:5367844/1‑93 (MQ=255)

         aaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATcc                                                                                >  1:1476290/1‑93 (MQ=255)

         aaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATcc                                                                                <  2:6388335/93‑1 (MQ=255)

         aaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATcc                                                                                >  1:5567295/1‑93 (MQ=255)

           cTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGTGCATCctc                                                                              <  1:123773/93‑1 (MQ=255)

           cTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCctc                                                                              <  2:1928108/93‑1 (MQ=255)

              ccGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCttt                                                                           <  1:2232064/93‑1 (MQ=255)

               cgcgCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTg                                                                          >  2:3827092/1‑93 (MQ=255)

                gcgcAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGt                                                                         >  1:3380484/1‑93 (MQ=255)

                gcgcAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGt                                                                         >  2:1227295/1‑93 (MQ=255)

                   cAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTg                                                                      >  2:5911406/1‑93 (MQ=255)

                     gATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTggg                                                                    >  1:3031038/1‑93 (MQ=255)

                     gATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTggg                                                                    <  2:2461765/93‑1 (MQ=255)

                      attcacCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGgc                                                                   <  2:6129056/90‑1 (MQ=255)

                      aTACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGgc                                                                   <  2:4442858/93‑1 (MQ=255)

                       tACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGgcg                                                                  >  2:160200/1‑93 (MQ=255)

                       tACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGgcg                                                                  >  2:6556143/1‑93 (MQ=255)

                       tACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGgcg                                                                  >  1:2570321/1‑93 (MQ=255)

                       tACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGgcg                                                                  >  1:4356658/1‑93 (MQ=255)

                        acacCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGgcgc                                                                 >  1:1149541/1‑93 (MQ=255)

                         cacCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCt                                                                <  2:4746877/93‑1 (MQ=255)

                           ccATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAt                                                              <  1:1696204/93‑1 (MQ=255)

                             aTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAttt                                                            <  1:2441997/93‑1 (MQ=255)

                             aTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAttt                                                            >  1:3213492/1‑93 (MQ=255)

                             aTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAttt                                                            <  2:5847338/93‑1 (MQ=255)

                              tGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTg                                                           >  2:4032912/1‑93 (MQ=255)

                                tCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGc                                                         <  1:2693905/93‑1 (MQ=255)

                                tCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGc                                                         >  1:5998545/1‑93 (MQ=255)

                                 cATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCg                                                        >  2:3800450/1‑93 (MQ=255)

                                  aTTCTCGCTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGt                                                       <  2:1306292/93‑1 (MQ=255)

                                  aTTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGt                                                       <  1:904708/93‑1 (MQ=255)

                                  aTTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGt                                                       <  2:1514027/93‑1 (MQ=255)

                                   ttCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCgct                                                      >  2:3114525/1‑91 (MQ=255)

                                   ttCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGtt                                                      <  2:2587460/93‑1 (MQ=255)

                                   ttCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGtt                                                      <  1:3929926/93‑1 (MQ=255)

                                    tctcACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTa                                                     >  2:2349339/1‑93 (MQ=255)

                                     ctcactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTAc                                                    >  1:3438844/1‑93 (MQ=255)

                                      tcactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACt                                                   <  2:3279111/93‑1 (MQ=255)

                                      tcactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACt                                                   >  1:5523585/1‑93 (MQ=255)

                                         ctcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGc                                                >  2:3237163/1‑93 (MQ=255)

                                          tcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCg                                               >  2:3171251/1‑93 (MQ=255)

                                          tcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCg                                               >  1:6327728/1‑93 (MQ=255)

                                          tcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCg                                               >  2:4975848/1‑93 (MQ=255)

                                           caTTGCGCCAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGa                                              >  1:830187/1‑93 (MQ=255)

                                            aTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGAc                                             >  2:2160859/1‑93 (MQ=255)

                                            aTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGAc                                             >  2:869054/1‑93 (MQ=255)

                                             ttGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACa                                            >  1:409881/1‑93 (MQ=255)

                                                 gACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatgat                                        <  1:5481233/93‑1 (MQ=255)

                                                 gACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatgat                                        <  2:3351001/93‑1 (MQ=255)

                                                  aCAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatgatg                                       >  2:4578789/1‑93 (MQ=255)

                                                   cAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACAtgatga                                      <  2:4875360/93‑1 (MQ=255)

                                                    aGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGaa                                     <  1:6700554/93‑1 (MQ=255)

                                                    aGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGaa                                     >  1:1359842/1‑93 (MQ=255)

                                                    aGGATTACTGGGGGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGTGTTACTTGCGACATGATGaa                                     >  2:4133383/1‑93 (MQ=255)

                                                     ggATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAc                                    >  1:3632677/1‑93 (MQ=255)

                                                      gATTACTGGGAGTTTATTTGACGACAATGCCGGGGGGGTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACt                                   >  1:2840176/1‑93 (MQ=255)

                                                        ttACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTgg                                 >  1:5631235/1‑93 (MQ=255)

                                                          aCTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGcc                               <  2:1353756/93‑1 (MQ=255)

                                                          aCTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGcc                               >  1:1313078/1‑93 (MQ=255)

                                                           cTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCg                              >  2:5656608/1‑93 (MQ=255)

                                                           cTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCg                              >  2:681979/1‑93 (MQ=255)

                                                            tGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAGTGGCCgg                             >  1:4647122/1‑93 (MQ=255)

                                                            tGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCgg                             <  2:3591845/93‑1 (MQ=255)

                                                            tGGGAGTTTATTTGACGACAATGCCGGGGAGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCgg                             >  1:4739352/1‑93 (MQ=255)

                                                             gggTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGt                            >  1:658092/1‑93 (MQ=255)

                                                              ggTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTc                           <  1:1905011/93‑1 (MQ=255)

                                                               gtgtTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCt                          >  1:4971055/1‑93 (MQ=255)

                                                               gtgtTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCt                          <  2:6209020/93‑1 (MQ=255)

                                                               gtgtTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCt                          <  2:3862343/93‑1 (MQ=255)

                                                                tgtTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGCCCGGTCtt                         <  1:6611026/93‑1 (MQ=255)

                                                                  tttATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGc                       <  1:5367946/93‑1 (MQ=255)

                                                                    tATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTc                     <  2:2595646/93‑1 (MQ=255)

                                                                      tttGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCaa                   >  2:5614371/1‑93 (MQ=255)

                                                                         gacgacAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTc                <  2:1074658/93‑1 (MQ=255)

                                                                         gacgacAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTc                <  1:3795498/93‑1 (MQ=255)

                                                                         gacgacAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTc                >  1:4023194/1‑93 (MQ=255)

                                                                           cgacAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCgg              >  2:5127603/1‑93 (MQ=255)

                                                                                aTGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGt         >  2:4489168/1‑93 (MQ=255)

                                                                                  gCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCg       <  1:4564129/93‑1 (MQ=255)

                                                                                  gCCGGGGTGTTGGGGCATCCGCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCg       >  1:6455521/1‑93 (MQ=255)

                                                                                   ccGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGa      <  1:159089/93‑1 (MQ=255)

                                                                                    cGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTATGTCGAt     >  1:5735475/1‑93 (MQ=255)

                                                                                      gggTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTg   <  1:38304/93‑1 (MQ=255)

                                                                                      gggTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTg   <  2:780981/93‑1 (MQ=255)

                                                                                       ggTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTgg  >  1:5807484/1‑93 (MQ=255)

                                                                                       ggTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTgg  <  1:4300343/93‑1 (MQ=255)

TTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG  >  NC_000913/4060022‑4060201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGGCAA  >  NC_000913/4060019‑4060205

ATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTG                                                                                               >  SRR4302536.534996/1‑94 (MQ=60)

 TTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGT                                                                                              >  SRR4302536.4146590/1‑94 (MQ=60)

 TTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGT                                                                                              <  SRR4302536.6832090/94‑1 (MQ=60)

 TTTTGCCGAGAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGT                                                                                              <  SRR4302536.879603/94‑1 (MQ=60)

  TTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTT                                                                                             >  SRR4302536.4377431/1‑94 (MQ=60)

  TTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTT                                                                                             <  SRR4302536.1767302/94‑1 (MQ=60)

    TGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGG                                                                                           <  SRR4302536.6411310/94‑1 (MQ=60)

    TGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGG                                                                                           <  SRR4302536.4293667/94‑1 (MQ=60)

     GCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGG                                                                                          <  SRR4302536.2105260/94‑1 (MQ=60)

     GCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGG                                                                                          <  SRR4302536.5010467/94‑1 (MQ=60)

     GCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGG                                                                                          <  SRR4302536.3529466/94‑1 (MQ=60)

      CCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGG                                                                                         >  SRR4302536.2991475/1‑94 (MQ=60)

      CCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGG                                                                                         <  SRR4302536.2358164/94‑1 (MQ=60)

       CGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGC                                                                                        >  SRR4302536.419494/1‑94 (MQ=60)

       CGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGC                                                                                        >  SRR4302536.2247666/1‑94 (MQ=60)

         ATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCAT                                                                                      >  SRR4302536.6338016/1‑94 (MQ=60)

           AAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCC                                                                                    >  SRR4302536.1519940/1‑94 (MQ=60)

           AAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCC                                                                                    >  SRR4302536.5733050/1‑94 (MQ=60)

           AAACTACCGCGCAGATACACCATGTCATTCTCACTCAATGCGACAGGAATACTGGCTGATTACTTGACGACAATGCCGGGGTGTTGGGGCATCC                                                                                    >  SRR4302536.3330377/1‑94 (MQ=60)

            AACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCT                                                                                   >  SRR4302536.5876828/1‑94 (MQ=60)

            AACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCT                                                                                   <  SRR4302536.427316/94‑1 (MQ=60)

              CTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGTGCATCCTCT                                                                                 <  SRR4302536.127038/94‑1 (MQ=60)

              CTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCT                                                                                 >  SRR4302536.1375350/1‑94 (MQ=60)

               TACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTT                                                                                >  SRR4302536.4314355/1‑94 (MQ=60)

               TACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTT                                                                                >  SRR4302536.2941243/1‑94 (MQ=60)

               TACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTT                                                                                <  SRR4302536.3664775/94‑1 (MQ=60)

               TACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTT                                                                                <  SRR4302536.5828391/94‑1 (MQ=60)

                ACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTT                                                                               <  SRR4302536.5129160/94‑1 (MQ=60)

                ACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTT                                                                               <  SRR4302536.6292722/94‑1 (MQ=60)

                ACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTT                                                                               >  SRR4302536.3907541/1‑94 (MQ=60)

                ACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTCGGGGCATCCTCTTT                                                                               <  SRR4302536.6799643/94‑1 (MQ=60)

                 CCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTG                                                                              <  SRR4302536.4745589/94‑1 (MQ=60)

                 CCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTG                                                                              <  SRR4302536.4920816/94‑1 (MQ=60)

                 CCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTG                                                                              <  SRR4302536.2299582/94‑1 (MQ=60)

                 CCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTG                                                                              <  SRR4302536.5603510/94‑1 (MQ=60)

                 CCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTG                                                                              <  SRR4302536.4132354/94‑1 (MQ=60)

                  CGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGT                                                                             <  SRR4302536.1224586/94‑1 (MQ=60)

                  CGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGT                                                                             >  SRR4302536.3480943/1‑94 (MQ=60)

                    CGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCT                                                                           <  SRR4302536.2933498/94‑1 (MQ=60)

                     GCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTG                                                                          >  SRR4302536.2591863/1‑94 (MQ=60)

                     GCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTG                                                                          <  SRR4302536.3204492/94‑1 (MQ=60)

                     GCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTG                                                                          <  SRR4302536.2317139/94‑1 (MQ=60)

                      CAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGG                                                                         <  SRR4302536.6526904/94‑1 (MQ=60)

                      CAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGG                                                                         <  SRR4302536.955823/94‑1 (MQ=60)

                       AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGG                                                                        >  SRR4302536.3120103/1‑94 (MQ=60)

                       AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGG                                                                        >  SRR4302536.3168508/1‑94 (MQ=60)

                       AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGG                                                                        >  SRR4302536.2757432/1‑94 (MQ=60)

                         ATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCG                                                                      >  SRR4302536.2647622/1‑94 (MQ=60)

                         ATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCG                                                                      >  SRR4302536.4486947/1‑94 (MQ=60)

                         ATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGAG                                                                      >  SRR4302536.3398220/1‑94 (MQ=60)

                          TACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGC                                                                     >  SRR4302536.1184116/1‑94 (MQ=60)

                           ACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCT                                                                    <  SRR4302536.3933248/94‑1 (MQ=60)

                           ACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCT                                                                    <  SRR4302536.6880303/94‑1 (MQ=60)

                             ACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAT                                                                  >  SRR4302536.5769999/1‑94 (MQ=60)

                             ACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAT                                                                  <  SRR4302536.799157/94‑1 (MQ=60)

                              CCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATT                                                                 <  SRR4302536.1745303/94‑1 (MQ=60)

                               CATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTT                                                                >  SRR4302536.1025607/1‑94 (MQ=60)

                               CATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTT                                                                >  SRR4302536.3307745/1‑94 (MQ=60)

                               CATGTCATTCNCACTCATTGCGACNGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTT                                                                <  SRR4302536.1973865/94‑1 (MQ=60)

                                ATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTG                                                               <  SRR4302536.2515791/94‑1 (MQ=60)

                                ATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTG                                                               <  SRR4302536.1430080/94‑1 (MQ=60)

                                 TGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGG                                                              >  SRR4302536.4605243/1‑94 (MQ=60)

                                 TGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGG                                                              <  SRR4302536.4308436/94‑1 (MQ=60)

                                  GTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGC                                                             >  SRR4302536.6177358/1‑94 (MQ=60)

                                   TCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCG                                                            <  SRR4302536.2774319/94‑1 (MQ=60)

                                    CATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGT                                                           <  SRR4302536.1944994/94‑1 (MQ=60)

                                     ATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTT                                                          <  SRR4302536.931374/94‑1 (MQ=60)

                                      TTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTA                                                         <  SRR4302536.4046692/94‑1 (MQ=60)

                                       TCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTAC                                                        >  SRR4302536.3541253/1‑94 (MQ=60)

                                        CTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACT                                                       >  SRR4302536.5688287/1‑94 (MQ=60)

                                         TCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTTGCGTTACTT                                                      <  SRR4302536.5976708/94‑1 (MQ=60)

                                         TCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTT                                                      <  SRR4302536.6233642/94‑1 (MQ=60)

                                         TCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCCATTTGGCGTTACTT                                                      <  SRR4302536.6797200/94‑1 (MQ=60)

                                          CACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTG                                                     <  SRR4302536.3027875/94‑1 (MQ=60)

                                           ACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGC                                                    <  SRR4302536.1503037/94‑1 (MQ=60)

                                           ACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGC                                                    >  SRR4302536.2898335/1‑94 (MQ=60)

                                           ACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGC                                                    >  SRR4302536.2663805/1‑94 (MQ=60)

                                            CTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCG                                                   <  SRR4302536.2296819/94‑1 (MQ=60)

                                            CTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCG                                                   >  SRR4302536.1720045/1‑94 (MQ=60)

                                            CTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCG                                                   >  SRR4302536.6516187/1‑94 (MQ=60)

                                             TCATTGCGCCAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGA                                                  >  SRR4302536.854624/1‑94 (MQ=60)

                                             TCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGA                                                  >  SRR4302536.6402519/1‑94 (MQ=60)

                                               ATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACA                                                >  SRR4302536.420694/1‑94 (MQ=60)

                                               ATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACA                                                <  SRR4302536.4483586/94‑1 (MQ=60)

                                                TTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACAT                                               <  SRR4302536.566742/94‑1 (MQ=60)

                                                TTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACAT                                               >  SRR4302536.5713096/1‑94 (MQ=60)

                                                 TGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATG                                              <  SRR4302536.4441625/94‑1 (MQ=60)

                                                 TGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATG                                              >  SRR4302536.6137810/1‑94 (MQ=60)

                                                 TGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATG                                              <  SRR4302536.50206/94‑1 (MQ=60)

                                                 TGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATG                                              <  SRR4302536.3841210/94‑1 (MQ=60)

                                                   CGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGAT                                            >  SRR4302536.1398652/1‑94 (MQ=60)

                                                    TACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGCGCGCTATTTGGCGATACTTGCGACATGATG                                           >  SRR4302536.2643466/1‑94 (MQ=60)

                                                    GACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATG                                           <  SRR4302536.5644908/94‑1 (MQ=60)

                                                    GACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATG                                           >  SRR4302536.874438/1‑94 (MQ=60)

                                                     ACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGA                                          >  SRR4302536.4128935/1‑94 (MQ=60)

                                                      CAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAA                                         >  SRR4302536.1400366/1‑94 (MQ=60)

                                                      CAGGATGACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTTGCGTTACTTGCGACATTATGAA                                         >  SRR4302536.3586435/1‑94 (MQ=60)

                                                       AGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAC                                        >  SRR4302536.3741334/1‑94 (MQ=60)

                                                       AGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAC                                        <  SRR4302536.6899573/94‑1 (MQ=60)

                                                        GGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACT                                       <  SRR4302536.4213240/94‑1 (MQ=60)

                                                        GGATTACTGGGAGTTTATTTGACGACAATGCCGGGGGGGTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACT                                       >  SRR4302536.2924215/1‑94 (MQ=60)

                                                         GATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTG                                      >  SRR4302536.6685408/1‑94 (MQ=60)

                                                          ATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGG                                     >  SRR4302536.5798519/1‑94 (MQ=60)

                                                          ATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGG                                     <  SRR4302536.776994/94‑1 (MQ=60)

                                                          ATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGG                                     <  SRR4302536.4286006/94‑1 (MQ=60)

                                                          ATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGG                                     >  SRR4302536.4721399/1‑94 (MQ=60)

                                                           TTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGC                                    <  SRR4302536.5116796/94‑1 (MQ=60)

                                                            TACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCC                                   >  SRR4302536.1352274/1‑94 (MQ=60)

                                                              CTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAGTGGCCGG                                 >  SRR4302536.4786836/1‑94 (MQ=60)

                                                              CTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGG                                 >  SRR4302536.4415278/1‑94 (MQ=60)

                                                              CTGGGAGTTTATTTGACGACAATGCCGGGGAGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGG                                 >  SRR4302536.4881957/1‑94 (MQ=60)

                                                               TGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGT                                >  SRR4302536.677383/1‑94 (MQ=60)

                                                                GGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTC                               >  SRR4302536.2370754/1‑94 (MQ=60)

                                                                 GGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCT                              <  SRR4302536.1962371/94‑1 (MQ=60)

                                                                 GGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCT                              >  SRR4302536.5120375/1‑94 (MQ=60)

                                                                 GGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCT                              <  SRR4302536.639349/94‑1 (MQ=60)

                                                                  GTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTT                             >  SRR4302536.1330027/1‑94 (MQ=60)

                                                                  GTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTT                             <  SRR4302536.3921489/94‑1 (MQ=60)

                                                                   TGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCTTTACTTGCGACATGATGAACTGGCCGGTCTTG                            <  SRR4302536.2392801/94‑1 (MQ=60)

                                                                   TGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTG                            >  SRR4302536.5643742/1‑94 (MQ=60)

                                                                   TGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGCCCGGTCTTG                            <  SRR4302536.6807599/94‑1 (MQ=60)

                                                                     TTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCT                          <  SRR4302536.5528017/94‑1 (MQ=60)

                                                                      TTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTC                         >  SRR4302536.2291040/1‑94 (MQ=60)

                                                                       TATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCA                        <  SRR4302536.1642430/94‑1 (MQ=60)

                                                                       TATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCA                        <  SRR4302536.133364/94‑1 (MQ=60)

                                                                         TTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAG                      <  SRR4302536.4857417/94‑1 (MQ=60)

                                                                         TTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAG                      >  SRR4302536.4545417/1‑94 (MQ=60)

                                                                           TGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTC                    >  SRR4302536.4142555/1‑94 (MQ=60)

                                                                           TGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTC                    <  SRR4302536.1954536/94‑1 (MQ=60)

                                                                           TGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTC                    >  SRR4302536.6855674/1‑94 (MQ=60)

                                                                            GACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCG                   <  SRR4302536.3908702/94‑1 (MQ=60)

                                                                            GACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCG                   >  SRR4302536.3475128/1‑94 (MQ=60)

                                                                             ACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGG                  >  SRR4302536.6033433/1‑94 (MQ=60)

                                                                             ACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGG                  >  SRR4302536.6476450/1‑94 (MQ=60)

                                                                              cggaAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGT                 <  SRR4302536.6505317/90‑1 (MQ=60)

                                                                               GACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTA                <  SRR4302536.5272194/94‑1 (MQ=60)

                                                                                CCAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAA               <  SRR4302536.3957540/94‑1 (MQ=60)

                                                                                ACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAA               <  SRR4302536.1548949/94‑1 (MQ=60)

                                                                                 CAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAG              <  SRR4302536.3119225/94‑1 (MQ=60)

                                                                                 CAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAG              >  SRR4302536.6709212/1‑94 (MQ=60)

                                                                                 CAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAG              >  SRR4302536.5664422/1‑94 (MQ=60)

                                                                                  AATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGT             >  SRR4302536.5760828/1‑94 (MQ=60)

                                                                                    TGCCGGGGTGTTGGGGCATCCGCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCG           >  SRR4302536.6648295/1‑94 (MQ=60)

                                                                                     GCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGA          <  SRR4302536.4701068/94‑1 (MQ=60)

                                                                                      CCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTATGTCGAT         >  SRR4302536.5906079/1‑94 (MQ=60)

                                                                                      CCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAT         <  SRR4302536.163202/94‑1 (MQ=60)

                                                                                         GGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG      <  SRR4302536.39377/94‑1 (MQ=60)

                                                                                         GGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG      <  SRR4302536.4960286/94‑1 (MQ=60)

                                                                                         GGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG      >  SRR4302536.5980448/1‑94 (MQ=60)

                                                                                          GGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGG     >  SRR4302536.1728771/1‑94 (MQ=60)

                                                                                          GGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGG     <  SRR4302536.4428905/94‑1 (MQ=60)

                                                                                             GTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGTTCGAGTCGGCAAGTCGAGTGGGCAA  >  SRR4302536.2804634/1‑94 (MQ=60)

ATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGGCAA  >  NC_000913/4060019‑4060205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`