Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,103,641 |
T→C |
intergenic (‑390/‑408) |
cpxR ← / → yiiP |
transcriptional regulator in 2‑component system/putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,103,641 | 0 | T | C | 99.5%
| 665.4
/ ‑4.8
| 206 | intergenic (‑390/‑408) | cpxR/yiiP | transcriptional regulator in 2‑component system/putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (104/101); total (104/102) |
| Fisher's exact test for biased strand distribution p-value = 4.95e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.72e-01 |
Only 100 of 215 total aligned reads displayed.
TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAG > NC_000913/4103551‑4103729
|
tAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGc < 1:2984453/93‑1 (MQ=255)
aaCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGAAAACGCa > 2:907362/1‑93 (MQ=255)
aCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCAt > 2:4529741/1‑93 (MQ=255)
aCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCACGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCAt < 2:4259024/93‑1 (MQ=255)
ccGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAGCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATc < 2:1826125/93‑1 (MQ=255)
ccGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATc < 1:702345/93‑1 (MQ=255)
gAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGc > 2:3600606/1‑93 (MQ=255)
gAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGc > 1:1385747/1‑93 (MQ=255)
aaCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGcc < 1:1892234/93‑1 (MQ=255)
aCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCt < 2:1391404/93‑1 (MQ=255)
aCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCt > 1:510745/1‑93 (MQ=255)
aCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCt > 2:384316/1‑93 (MQ=255)
cATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCtt < 2:1866789/93‑1 (MQ=255)
cATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCtt > 1:3435787/1‑93 (MQ=255)
cATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCtt > 2:3902381/1‑93 (MQ=255)
aTCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTg > 2:1555035/1‑93 (MQ=255)
cAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGACACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTc < 1:1144416/93‑1 (MQ=255)
gTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCg > 2:402334/1‑93 (MQ=255)
tCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGc > 1:755556/1‑93 (MQ=255)
tCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGc > 2:590321/1‑93 (MQ=255)
cagcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCa < 2:1208289/93‑1 (MQ=255)
cagcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCa < 2:961757/93‑1 (MQ=255)
cagcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCa > 2:1071350/1‑93 (MQ=255)
gcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGa < 1:2641995/93‑1 (MQ=255)
gcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGa > 1:2828529/1‑93 (MQ=255)
gcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGa > 1:877294/1‑93 (MQ=255)
gcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGa > 2:518424/1‑93 (MQ=255)
gcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGa > 1:854035/1‑93 (MQ=255)
gcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGa > 2:3151652/1‑93 (MQ=255)
agATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaa < 1:1177856/93‑1 (MQ=255)
agATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaa < 1:3221195/93‑1 (MQ=255)
gATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaaa > 1:4292380/1‑93 (MQ=255)
tGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAAtt > 2:1891939/1‑93 (MQ=255)
cGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAAtttt < 2:2832629/93‑1 (MQ=255)
agaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtga < 1:4676275/93‑1 (MQ=255)
gaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgat > 1:988752/1‑93 (MQ=255)
gaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgat > 2:1606391/1‑93 (MQ=255)
aTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTTGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgatg > 1:2365444/1‑93 (MQ=255)
aTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgatg > 1:2529740/1‑93 (MQ=255)
tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa < 2:3248889/93‑1 (MQ=255)
tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa < 1:4093042/93‑1 (MQ=255)
tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa < 1:3915002/93‑1 (MQ=255)
aTGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAc < 1:2583779/93‑1 (MQ=255)
aTGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAc < 1:2086395/93‑1 (MQ=255)
tGCAACAGGCCCGGCACGAACAGCCTCCTGGTAATGTTAGCGAACTGGAGACAAAGCATCGCCTAGTCACCGCAGAAAATTTTGATGAAAACg > 1:1894094/1‑93 (MQ=255)
gCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGc < 1:1030880/93‑1 (MQ=255)
aaCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtg > 2:2929604/1‑93 (MQ=255)
aGGCCCGGCACGAACAGCCTCCTGTTAATGTTACCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTgc > 1:1611037/1‑93 (MQ=255)
ggCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGcac < 2:3096076/93‑1 (MQ=255)
ggCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGcac > 2:2135899/1‑93 (MQ=255)
ggCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGcac > 1:3703485/1‑93 (MQ=255)
gCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGcaca < 2:2546379/93‑1 (MQ=255)
gCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGcaca < 1:2909146/93‑1 (MQ=255)
cACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAg < 1:3780115/93‑1 (MQ=255)
cACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAg < 1:1782061/93‑1 (MQ=255)
aCGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAgg > 1:2081623/1‑93 (MQ=255)
gAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCa < 2:961877/93‑1 (MQ=255)
aaCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAg < 1:4387484/93‑1 (MQ=255)
aaCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAg < 2:1529279/93‑1 (MQ=255)
aaCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAg < 2:2432267/93‑1 (MQ=255)
aCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGa > 1:1223581/1‑93 (MQ=255)
aCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGa > 2:1254102/1‑93 (MQ=255)
aCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGa > 2:226146/1‑93 (MQ=255)
ctcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaaaa < 1:243734/93‑1 (MQ=255)
ctcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaaaa < 1:2124243/93‑1 (MQ=255)
ctcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATATTGATGAAAACGCTGTGCGAGCACAGGCAGaaaaaa > 2:1284706/1‑93 (MQ=255)
tcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAt > 2:3666261/1‑93 (MQ=255)
tcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAt < 1:3615365/93‑1 (MQ=255)
tcctGTTAATGTTAGCGAACTGGAGACAACGCATAGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAt < 1:595410/93‑1 (MQ=255)
cctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATg < 1:2954027/93‑1 (MQ=255)
ctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTCTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATgg < 2:3391959/93‑1 (MQ=255)
ctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGGCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATgg > 1:3019545/1‑93 (MQ=255)
tGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGc > 1:4650980/1‑93 (MQ=255)
tGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGc < 2:1490786/93‑1 (MQ=255)
ttAATGTTAGCGAACTGGAGACAACGCATCTCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGa < 2:104657/93‑1 (MQ=255)
ttAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGa < 2:3429717/93‑1 (MQ=255)
tAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGaa < 1:4497474/93‑1 (MQ=255)
tAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGaa < 2:4511315/93‑1 (MQ=255)
aTGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATg > 1:2275484/1‑93 (MQ=255)
tGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGa > 2:3196825/1‑93 (MQ=255)
tGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGa < 1:4606038/93‑1 (MQ=255)
tGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGa < 1:3908517/93‑1 (MQ=255)
tGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGa > 1:3928031/1‑93 (MQ=255)
tGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGAAGAAAAAATGGCGAATGa < 2:1422330/93‑1 (MQ=255)
gTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCAGAGGCAGAAAAAATGGCGAATGAg > 2:2615017/1‑93 (MQ=255)
gTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAg > 2:4228562/1‑93 (MQ=255)
ttAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGc > 1:3461675/1‑93 (MQ=255)
ttAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGc < 1:1085674/93‑1 (MQ=255)
cGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAt < 2:3344948/93‑1 (MQ=255)
gAACTGGAGACAACGCATCGCCTTGTCACGGCAGACAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAACTGGCGAATGAGGAAGtt > 2:2279068/1‑93 (MQ=255)
gAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAtt < 2:4630452/93‑1 (MQ=255)
aaCTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTg > 1:1593745/1‑93 (MQ=255)
aaCTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTg > 1:1256096/1‑93 (MQ=255)
aaCTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATAGCGAATGAGCAAATTg > 2:1326009/1‑93 (MQ=255)
aCTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGc < 2:480603/93‑1 (MQ=255)
tGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTc < 2:2347830/93‑1 (MQ=255)
tGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTc < 1:3418185/93‑1 (MQ=255)
gaCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCa < 1:2175510/93‑1 (MQ=255)
aCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAg < 2:4060213/93‑1 (MQ=255)
aCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAg < 1:4474511/93‑1 (MQ=255)
|
TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAG > NC_000913/4103551‑4103729
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTTG > NC_000913/4103548‑4103733
|
GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAAC < SRR4302544.2563089/94‑1 (MQ=60)
TTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACG > SRR4302544.168937/1‑94 (MQ=60)
TTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACG < SRR4302544.789379/94‑1 (MQ=60)
TTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCAGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACG > SRR4302544.1927650/1‑94 (MQ=60)
TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCA > SRR4302544.384681/1‑94 (MQ=60)
TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCA < SRR4302544.3013071/94‑1 (MQ=60)
CCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCG > SRR4302544.1789333/1‑94 (MQ=60)
CCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCG < SRR4302544.709337/94‑1 (MQ=60)
CGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGC > SRR4302544.1399583/1‑94 (MQ=60)
AACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCT < SRR4302544.1910511/94‑1 (MQ=60)
AACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCT > SRR4302544.515785/1‑94 (MQ=60)
ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT > SRR4302544.3468635/1‑94 (MQ=60)
ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT < SRR4302544.2430127/94‑1 (MQ=60)
CATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTG < SRR4302544.720730/94‑1 (MQ=60)
CATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTG > SRR4302544.3111294/1‑94 (MQ=60)
ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT > SRR4302544.1271229/1‑94 (MQ=60)
ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT > SRR4302544.2201541/1‑94 (MQ=60)
TCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTC < SRR4302544.2596501/94‑1 (MQ=60)
CAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGACACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCA < SRR4302544.1155794/94‑1 (MQ=60)
CTTCAGCAGATGCGAGATCTTATACAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCG < SRR4302544.1121187/94‑1 (MQ=60)
GTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGC > SRR4302544.762935/1‑94 (MQ=60)
TCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCA > SRR4302544.4466507/1‑94 (MQ=60)
CAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAG < SRR4302544.3883599/94‑1 (MQ=60)
AGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGA > SRR4302544.2855855/1‑94 (MQ=60)
AGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGA > SRR4302544.886000/1‑94 (MQ=60)
AGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGA > SRR4302544.862485/1‑94 (MQ=60)
GCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAA < SRR4302544.2667322/94‑1 (MQ=60)
CAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAA > SRR4302544.142117/1‑94 (MQ=60)
AGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAA < SRR4302544.3251942/94‑1 (MQ=60)
AGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAA > SRR4302544.4336212/1‑94 (MQ=60)
AGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAA > SRR4302544.1195107/1‑94 (MQ=60)
AGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAA < SRR4302544.1189595/94‑1 (MQ=60)
ATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATT > SRR4302544.615869/1‑94 (MQ=60)
GCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTT > SRR4302544.2151494/1‑94 (MQ=60)
AGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGAT < SRR4302544.4722495/94‑1 (MQ=60)
AGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGAT > SRR4302544.998469/1‑94 (MQ=60)
GATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTTGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATG > SRR4302544.2387829/1‑94 (MQ=60)
GATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATG < SRR4302544.956597/94‑1 (MQ=60)
GATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATG > SRR4302544.2554044/1‑94 (MQ=60)
TCGTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAA < SRR4302544.3651679/94‑1 (MQ=60)
CTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTATTGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAA > SRR4302544.4778320/1‑94 (MQ=60)
TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAC < SRR4302544.3953893/94‑1 (MQ=60)
TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAC < SRR4302544.3953894/94‑1 (MQ=60)
TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAC < SRR4302544.4133762/94‑1 (MQ=60)
ATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACG < SRR4302544.2106466/94‑1 (MQ=60)
ATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACG < SRR4302544.2608620/94‑1 (MQ=60)
ATGCAACAGGCCCGGCACGAACAGCCTCCTGGTAATGTTAGCGAACTGGAGACAAAGCATCGCCTAGTCACCGCAGAAAATTTTGATGAAAACG > SRR4302544.1912396/1‑94 (MQ=60)
GCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCT < SRR4302544.1041145/94‑1 (MQ=60)
CAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTG < SRR4302544.872187/94‑1 (MQ=60)
CAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTG > SRR4302544.1885954/1‑94 (MQ=60)
AACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGT < SRR4302544.1179997/94‑1 (MQ=60)
AACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGT < SRR4302544.1055567/94‑1 (MQ=60)
ACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTG < SRR4302544.3474449/94‑1 (MQ=60)
CAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGC > SRR4302544.4601439/1‑94 (MQ=60)
CAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGC < SRR4302544.702648/94‑1 (MQ=60)
CAGGCCCGGCACGAACAGCCTCCTGTTAATGTTACCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGC > SRR4302544.1626920/1‑94 (MQ=60)
GGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGC < SRR4302544.2101648/94‑1 (MQ=60)
GCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCG < SRR4302544.2961587/94‑1 (MQ=60)
CCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCA > SRR4302544.3032549/1‑94 (MQ=60)
CGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCAC < SRR4302544.1580159/94‑1 (MQ=60)
CGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCAC > SRR4302544.3740343/1‑94 (MQ=60)
GCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAG < SRR4302544.2937136/94‑1 (MQ=60)
CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG < SRR4302544.1799489/94‑1 (MQ=60)
CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG < SRR4302544.3550456/94‑1 (MQ=60)
CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG < SRR4302544.3817557/94‑1 (MQ=60)
CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG > SRR4302544.288473/1‑94 (MQ=60)
CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG > SRR4302544.2101637/1‑94 (MQ=60)
ACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGC > SRR4302544.3352466/1‑94 (MQ=60)
CGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCA < SRR4302544.4504928/94‑1 (MQ=60)
CGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCA > SRR4302544.23790/1‑94 (MQ=60)
GAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAG < SRR4302544.2128862/94‑1 (MQ=60)
AACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGA > SRR4302544.1235685/1‑94 (MQ=60)
AACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGA > SRR4302544.3142200/1‑94 (MQ=60)
AACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGA < SRR4302544.4431902/94‑1 (MQ=60)
CCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAA > SRR4302544.1622545/1‑94 (MQ=60)
CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCTTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT < SRR4302544.2535230/94‑1 (MQ=60)
CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT < SRR4302544.246273/94‑1 (MQ=60)
CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT < SRR4302544.2144619/94‑1 (MQ=60)
TCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATG < SRR4302544.3651008/94‑1 (MQ=60)
TCCTGTTAATGTTAGCGAACTGGAGACAACGCATAGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATG < SRR4302544.601253/94‑1 (MQ=60)
CCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGG < SRR4302544.2982400/94‑1 (MQ=60)
CCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGGCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGG > SRR4302544.3048485/1‑94 (MQ=60)
CTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGC < SRR4302544.4094182/94‑1 (MQ=60)
CTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGC > SRR4302544.4697013/1‑94 (MQ=60)
TTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAA > SRR4302544.3791184/1‑94 (MQ=60)
TAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAT < SRR4302544.4542611/94‑1 (MQ=60)
AATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATG > SRR4302544.2296910/1‑94 (MQ=60)
ATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGA < SRR4302544.3455833/94‑1 (MQ=60)
ATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGA > SRR4302544.3967040/1‑94 (MQ=60)
TGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAG < SRR4302544.3947352/94‑1 (MQ=60)
TGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAG < SRR4302544.4651804/94‑1 (MQ=60)
TGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAG < SRR4302544.4651803/94‑1 (MQ=60)
TGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAG < SRR4302544.1255314/94‑1 (MQ=60)
GTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGC > SRR4302544.3494711/1‑94 (MQ=60)
GTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGC > SRR4302544.2110747/1‑94 (MQ=60)
GTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGC > SRR4302544.4718360/1‑94 (MQ=60)
TTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCA < SRR4302544.1096477/94‑1 (MQ=60)
TTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAAGTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCA < SRR4302544.541137/94‑1 (MQ=60)
AGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAA > SRR4302544.2051561/1‑94 (MQ=60)
CGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATT < SRR4302544.3966809/94‑1 (MQ=60)
GAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTG > SRR4302544.1268458/1‑94 (MQ=60)
GAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTG > SRR4302544.1609443/1‑94 (MQ=60)
ACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCT > SRR4302544.2600838/1‑94 (MQ=60)
CTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTC < SRR4302544.2775385/94‑1 (MQ=60)
TGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCG < SRR4302544.3450861/94‑1 (MQ=60)
TGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCG > SRR4302544.1912214/1‑94 (MQ=60)
TGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCG > SRR4302544.3006483/1‑94 (MQ=60)
TGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGAAGAAAAAATGGCGAATGAGCAAATTGCTCG < SRR4302544.2617549/94‑1 (MQ=60)
GGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGT < SRR4302544.4342964/94‑1 (MQ=60)
AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA > SRR4302544.4206480/1‑94 (MQ=60)
AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA > SRR4302544.823465/1‑94 (MQ=60)
GACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAG < SRR4302544.2196122/94‑1 (MQ=60)
ACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAATCGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGG < SRR4302544.4519507/94‑1 (MQ=60)
ACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGG < SRR4302544.4519506/94‑1 (MQ=60)
CAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTTGTCAGGT > SRR4302544.161823/1‑94 (MQ=60)
CAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGT > SRR4302544.2973005/1‑94 (MQ=60)
AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCACATTGCTCGTCAGGTT > SRR4302544.2221798/1‑94 (MQ=60)
AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT < SRR4302544.3316534/94‑1 (MQ=60)
ACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTTG > SRR4302544.859615/1‑94 (MQ=60)
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GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTTG > NC_000913/4103548‑4103733
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
