Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,103,641 T→C intergenic (‑390/‑408) cpxR ← / → yiiP transcriptional regulator in 2‑component system/putative transport system permease protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,103,6410TC100.0% 935.5 / NA 288intergenic (‑390/‑408)cpxR/yiiPtranscriptional regulator in 2‑component system/putative transport system permease protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (154/134);  total (154/134)

Only 100 of 291 total aligned reads displayed.

TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGG  >  NC_000913/4103551‑4103730
                                                                                          |                                                                                         
tAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGc                                                                                         <  1:3304725/93‑1 (MQ=255)
 aaCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCa                                                                                        <  1:6008458/93‑1 (MQ=255)
 aaCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCa                                                                                        >  2:3227410/1‑93 (MQ=255)
 aaCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCa                                                                                        >  1:286966/1‑93 (MQ=255)
 aaCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCa                                                                                        <  2:5861993/93‑1 (MQ=255)
  aCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCAt                                                                                       <  1:4645229/93‑1 (MQ=255)
  aCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCAt                                                                                       >  1:3774071/1‑93 (MQ=255)
  aCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCAt                                                                                       >  2:5774333/1‑93 (MQ=255)
   ccGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATc                                                                                      <  2:522499/93‑1 (MQ=255)
       aCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCt                                                                                  <  1:5524311/93‑1 (MQ=255)
       aCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCt                                                                                  <  2:4961578/93‑1 (MQ=255)
       aCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCt                                                                                  <  2:3765594/93‑1 (MQ=255)
         aTCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTg                                                                                >  2:1298893/1‑93 (MQ=255)
          tCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGt                                                                               >  2:286050/1‑93 (MQ=255)
          tCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGt                                                                               >  2:2024967/1‑93 (MQ=255)
           cAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTc                                                                              <  2:753510/93‑1 (MQ=255)
            aGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCa                                                                             >  1:686711/1‑93 (MQ=255)
             gCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAc                                                                            >  2:5273969/1‑93 (MQ=255)
              cGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAcc                                                                           >  2:2814807/1‑93 (MQ=255)
                tCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGc                                                                         >  1:1266520/1‑93 (MQ=255)
                  agcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAg                                                                       >  2:2529825/1‑93 (MQ=255)
                   gcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGa                                                                      >  2:2062351/1‑93 (MQ=255)
                    cagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaa                                                                     <  1:4356630/93‑1 (MQ=255)
                     agATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaa                                                                    >  2:5986404/1‑93 (MQ=255)
                     agATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaa                                                                    >  2:5881482/1‑93 (MQ=255)
                      gATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaaa                                                                   >  2:821470/1‑93 (MQ=255)
                      gATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaaa                                                                   >  2:2924168/1‑93 (MQ=255)
                      gATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaaa                                                                   >  1:6279401/1‑93 (MQ=255)
                        tGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAAtt                                                                 >  2:1019864/1‑93 (MQ=255)
                          cGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAAtttt                                                               <  1:3901296/93‑1 (MQ=255)
                           gagaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtg                                                              >  1:5303699/1‑93 (MQ=255)
                           gagaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtg                                                              >  1:1201600/1‑93 (MQ=255)
                            agaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtga                                                             <  1:4751803/93‑1 (MQ=255)
                            agaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtga                                                             >  2:4570418/1‑93 (MQ=255)
                            agaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtga                                                             <  1:663037/93‑1 (MQ=255)
                             gaTCTTATGCAACAGGCCCGGCACGAACCGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgat                                                            <  1:4288388/93‑1 (MQ=255)
                             gaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgat                                                            <  2:6286381/93‑1 (MQ=255)
                              aTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgatg                                                           >  2:2619916/1‑93 (MQ=255)
                              aTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgatg                                                           <  2:1770302/93‑1 (MQ=255)
                                 ttATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaa                                                        >  2:3642880/1‑93 (MQ=255)
                                   acgCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAc                                                      <  2:5033384/91‑1 (MQ=255)
                                   aTGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAc                                                      <  2:6360239/93‑1 (MQ=255)
                                     gCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGc                                                    <  2:2718525/93‑1 (MQ=255)
                                      cAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCt                                                   <  1:3246303/93‑1 (MQ=255)
                                      cAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCt                                                   >  2:4185729/1‑93 (MQ=255)
                                       aaCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAACGCAGAAAATTTTGATGAAAACGCtg                                                  >  1:254448/1‑93 (MQ=255)
                                        aCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCttt                                                 >  1:340283/1‑91 (MQ=255)
                                         cAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtgtg                                                <  1:3456947/93‑1 (MQ=255)
                                         cAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtgtg                                                <  2:3598408/93‑1 (MQ=255)
                                          aGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTgc                                               >  1:4781184/1‑93 (MQ=255)
                                                ggCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGcac                                         >  1:5971863/1‑93 (MQ=255)
                                                  cACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAg                                       <  2:6117485/93‑1 (MQ=255)
                                                  cACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAg                                       <  2:916121/93‑1 (MQ=255)
                                                  cACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAg                                       <  1:1398468/93‑1 (MQ=255)
                                                   aCGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAgg                                      <  1:518222/93‑1 (MQ=255)
                                                    cGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGc                                     >  1:1981318/1‑93 (MQ=255)
                                                    cGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGc                                     <  1:409151/93‑1 (MQ=255)
                                                     gAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCa                                    <  2:4671573/93‑1 (MQ=255)
                                                      aaCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAg                                   <  2:195250/93‑1 (MQ=255)
                                                      aaCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAg                                   >  1:6511063/1‑93 (MQ=255)
                                                      aaCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAg                                   >  1:3111172/1‑93 (MQ=255)
                                                       aCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGa                                  >  2:2272953/1‑93 (MQ=255)
                                                       aCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGa                                  >  2:6295839/1‑93 (MQ=255)
                                                       aCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGa                                  <  2:5790673/93‑1 (MQ=255)
                                                       aCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGa                                  >  1:5635730/1‑93 (MQ=255)
                                                       aCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGa                                  >  2:3490708/1‑93 (MQ=255)
                                                          gCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaa                               >  2:4504703/1‑93 (MQ=255)
                                                            ctcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaaaa                             >  1:1005225/1‑93 (MQ=255)
                                                            ctcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaaaa                             <  2:4027515/93‑1 (MQ=255)
                                                            ctcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaaaa                             >  1:2762273/1‑93 (MQ=255)
                                                            ctcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaaaa                             >  1:1718586/1‑93 (MQ=255)
                                                             tcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAt                            >  1:5396240/1‑93 (MQ=255)
                                                             tcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAt                            <  2:246961/93‑1 (MQ=255)
                                                              cctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATg                           >  2:6520792/1‑93 (MQ=255)
                                                              cctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATg                           >  1:4590835/1‑93 (MQ=255)
                                                               ctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATgg                          >  1:2711385/1‑93 (MQ=255)
                                                                tGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGc                         <  2:4744902/93‑1 (MQ=255)
                                                                tGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGc                         <  2:1827761/93‑1 (MQ=255)
                                                                  ttAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGTAAAAATGGCGa                       >  2:437119/1‑93 (MQ=255)
                                                                    aaTGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAt                     <  1:1103309/93‑1 (MQ=255)
                                                                     aTGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATg                    <  2:2592202/93‑1 (MQ=255)
                                                                      tGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGa                   <  2:1498546/93‑1 (MQ=255)
                                                                       gTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAg                  >  2:5979108/1‑93 (MQ=255)
                                                                        ttAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGc                 <  1:1851477/93‑1 (MQ=255)
                                                                         tAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCa                >  1:6407689/1‑93 (MQ=255)
                                                                          aGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCaa               >  2:242381/1‑93 (MQ=255)
                                                                          aGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCaa               >  1:6730609/1‑93 (MQ=255)
                                                                           gCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCaaa              <  1:5776074/93‑1 (MQ=255)
                                                                           gCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCaaa              >  2:2088787/1‑93 (MQ=255)
                                                                           gCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCaaa              <  2:6464408/93‑1 (MQ=255)
                                                                           gCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCaaa              <  1:222937/93‑1 (MQ=255)
                                                                            cGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAt             <  1:2589499/93‑1 (MQ=255)
                                                                             gAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAtt            <  2:4263088/93‑1 (MQ=255)
                                                                                  ggAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCg       >  1:897064/1‑93 (MQ=255)
                                                                                  ggAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCg       >  2:2248784/1‑93 (MQ=255)
                                                                                  ggAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCg       >  2:1874125/1‑93 (MQ=255)
                                                                                   gagaCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGt      >  1:6232012/1‑93 (MQ=255)
                                                                                     gaCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCa    >  1:3951226/1‑93 (MQ=255)
                                                                                      aCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAg   >  1:2326534/1‑93 (MQ=255)
                                                                                      aCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAg   <  1:61444/93‑1 (MQ=255)
                                                                                          |                                                                                         
TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGG  >  NC_000913/4103551‑4103730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTTGA  >  NC_000913/4103548‑4103734
                                                                                             |                                                                                             
GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAAC                                                                                               <  SRR4302536.5837743/94‑1 (MQ=60)
GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAAC                                                                                               <  SRR4302536.5107062/94‑1 (MQ=60)
 TTTAACCGACCATCAGCGTCAGCAGATGAGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACG                                                                                              <  SRR4302536.4876636/94‑1 (MQ=60)
 TTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACG                                                                                              <  SRR4302536.1757348/94‑1 (MQ=60)
  TTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGC                                                                                             <  SRR4302536.3785686/94‑1 (MQ=60)
   TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCA                                                                                            <  SRR4302536.79445/94‑1 (MQ=60)
   TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCA                                                                                            >  SRR4302536.294592/1‑94 (MQ=60)
   TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCA                                                                                            <  SRR4302536.3402263/94‑1 (MQ=60)
    AACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCAT                                                                                           >  SRR4302536.2578968/1‑94 (MQ=60)
    AACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCAT                                                                                           <  SRR4302536.6187579/94‑1 (MQ=60)
    AACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCAT                                                                                           >  SRR4302536.3886720/1‑94 (MQ=60)
     ACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATC                                                                                          <  SRR4302536.2516183/94‑1 (MQ=60)
     ACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATC                                                                                          <  SRR4302536.4784886/94‑1 (MQ=60)
     ACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATC                                                                                          >  SRR4302536.4055574/1‑94 (MQ=60)
      CCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCG                                                                                         <  SRR4302536.3780603/94‑1 (MQ=60)
       CGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGC                                                                                        >  SRR4302536.4882021/1‑94 (MQ=60)
         AACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCT                                                                                      >  SRR4302536.2724841/1‑94 (MQ=60)
         AACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCT                                                                                      <  SRR4302536.1208476/94‑1 (MQ=60)
         AACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCT                                                                                      <  SRR4302536.3225230/94‑1 (MQ=60)
          ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT                                                                                     <  SRR4302536.2818537/94‑1 (MQ=60)
          ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT                                                                                     >  SRR4302536.4692643/1‑94 (MQ=60)
          ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT                                                                                     <  SRR4302536.5689035/94‑1 (MQ=60)
          ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT                                                                                     <  SRR4302536.6145250/94‑1 (MQ=60)
          ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT                                                                                     <  SRR4302536.1644828/94‑1 (MQ=60)
           CATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTG                                                                                    >  SRR4302536.3488133/1‑94 (MQ=60)
            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                   >  SRR4302536.1210037/1‑94 (MQ=60)
            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                   >  SRR4302536.228387/1‑94 (MQ=60)
            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                   >  SRR4302536.5825928/1‑94 (MQ=60)
              CAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCA                                                                                 <  SRR4302536.4701240/94‑1 (MQ=60)
              CAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCA                                                                                 >  SRR4302536.706815/1‑94 (MQ=60)
                GCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACC                                                                               <  SRR4302536.5490523/94‑1 (MQ=60)
                  GTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGC                                                                             >  SRR4302536.5625498/1‑94 (MQ=60)
                  GTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGC                                                                             >  SRR4302536.1304481/1‑94 (MQ=60)
                  GTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGC                                                                             >  SRR4302536.4128152/1‑94 (MQ=60)
                     AGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACTCATCGCCTTGTCGCCGCAGA                                                                          <  SRR4302536.4339927/94‑1 (MQ=60)
                     AGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGA                                                                          >  SRR4302536.3256101/1‑94 (MQ=60)
                     ACCAGATTCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCGCCGCAGA                                                                          <  SRR4302536.1289963/94‑1 (MQ=60)
                       CAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAA                                                                        <  SRR4302536.4486919/94‑1 (MQ=60)
                        AGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAA                                                                       >  SRR4302536.6466523/1‑94 (MQ=60)
                        AGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAA                                                                       >  SRR4302536.6924146/1‑94 (MQ=60)
                          ATGAGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATT                                                                     <  SRR4302536.4916483/94‑1 (MQ=60)
                            GCGAGGTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTT                                                                   <  SRR4302536.5409440/94‑1 (MQ=60)
                             CGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTG                                                                  >  SRR4302536.1237709/1‑94 (MQ=60)
                             CGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTG                                                                  >  SRR4302536.5461924/1‑94 (MQ=60)
                             CGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTG                                                                  <  SRR4302536.4017277/94‑1 (MQ=60)
                              GAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGA                                                                 >  SRR4302536.3505946/1‑94 (MQ=60)
                               AGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGAT                                                                <  SRR4302536.530745/94‑1 (MQ=60)
                               AGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGAT                                                                >  SRR4302536.301380/1‑94 (MQ=60)
                               AGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGAT                                                                <  SRR4302536.4894804/94‑1 (MQ=60)
                               AGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGAT                                                                <  SRR4302536.682482/94‑1 (MQ=60)
                                GATCTTATGCAACAGGCCCGGCACGAACCGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATG                                                               <  SRR4302536.4416518/94‑1 (MQ=60)
                                GATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATG                                                               >  SRR4302536.3914092/1‑94 (MQ=60)
                                GATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATG                                                               >  SRR4302536.6405880/1‑94 (MQ=60)
                                GATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATG                                                               >  SRR4302536.4771543/1‑94 (MQ=60)
                                 ATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGA                                                              >  SRR4302536.2927410/1‑94 (MQ=60)
                                 ATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGA                                                              >  SRR4302536.1828008/1‑94 (MQ=60)
                                 ATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGA                                                              <  SRR4302536.773628/94‑1 (MQ=60)
                                 ATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGCTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGA                                                              <  SRR4302536.5191840/94‑1 (MQ=60)
                                  TCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAA                                                             <  SRR4302536.991426/94‑1 (MQ=60)
                                  TCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAA                                                             <  SRR4302536.2331209/94‑1 (MQ=60)
                                   CTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAA                                                            >  SRR4302536.285747/1‑94 (MQ=60)
                                    TTATGCATCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAA                                                           <  SRR4302536.4807171/94‑1 (MQ=60)
                                      ATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACG                                                         <  SRR4302536.4921378/94‑1 (MQ=60)
                                      ATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACG                                                         <  SRR4302536.5802962/94‑1 (MQ=60)
                                       TGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGC                                                        >  SRR4302536.4035250/1‑94 (MQ=60)
                                        GCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCT                                                       <  SRR4302536.6383335/94‑1 (MQ=60)
                                         CAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTG                                                      <  SRR4302536.3341486/94‑1 (MQ=60)
                                         CAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAACGCAGAAAATTTTGATGAAAACGCTG                                                      >  SRR4302536.261245/1‑94 (MQ=60)
                                         CAACAGGCCCGGCACCAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTG                                                      >  SRR4302536.5207501/1‑94 (MQ=60)
                                          AACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTTT                                                     >  SRR4302536.349291/1‑94 (MQ=60)
                                           ACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTG                                                    >  SRR4302536.1718789/1‑94 (MQ=60)
                                            CAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGC                                                   <  SRR4302536.3559919/94‑1 (MQ=60)
                                            CAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGC                                                   >  SRR4302536.4925141/1‑94 (MQ=60)
                                            CAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGC                                                   >  SRR4302536.4474488/1‑94 (MQ=60)
                                            CAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGC                                                   >  SRR4302536.1057317/1‑94 (MQ=60)
                                                CCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGC                                               >  SRR4302536.1431806/1‑94 (MQ=60)
                                                 CCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCA                                              >  SRR4302536.6523041/1‑94 (MQ=60)
                                                  CGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCAC                                             >  SRR4302536.6149864/1‑94 (MQ=60)
                                                     CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG                                          <  SRR4302536.1440093/94‑1 (MQ=60)
                                                     CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG                                          >  SRR4302536.945413/1‑94 (MQ=60)
                                                     CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG                                          >  SRR4302536.6646343/1‑94 (MQ=60)
                                                     CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG                                          >  SRR4302536.4344141/1‑94 (MQ=60)
                                                     CACGAACAGACTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG                                          <  SRR4302536.1987890/94‑1 (MQ=60)
                                                      ACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGC                                         >  SRR4302536.2040899/1‑94 (MQ=60)
                                                      ACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGC                                         <  SRR4302536.531508/94‑1 (MQ=60)
                                                       CGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCA                                        <  SRR4302536.419942/94‑1 (MQ=60)
                                                        GAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAG                                       <  SRR4302536.5554187/94‑1 (MQ=60)
                                                        GAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAG                                       >  SRR4302536.6705085/1‑94 (MQ=60)
                                                        GAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAG                                       >  SRR4302536.3202025/1‑94 (MQ=60)
                                                         AACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGA                                      >  SRR4302536.5803151/1‑94 (MQ=60)
                                                         AACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGA                                      <  SRR4302536.3555537/94‑1 (MQ=60)
                                                          ACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAA                                     <  SRR4302536.2836199/94‑1 (MQ=60)
                                                           CAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAA                                    >  SRR4302536.6778306/1‑94 (MQ=60)
                                                           CAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAA                                    >  SRR4302536.5433803/1‑94 (MQ=60)
                                                             GCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAA                                  >  SRR4302536.1373458/1‑94 (MQ=60)
                                                              CCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAA                                 >  SRR4302536.1034886/1‑94 (MQ=60)
                                                              CCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAA                                 <  SRR4302536.6439720/94‑1 (MQ=60)
                                                              CCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAA                                 <  SRR4302536.6418657/94‑1 (MQ=60)
                                                              CCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAA                                 >  SRR4302536.1768263/1‑94 (MQ=60)
                                                              CCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAA                                 >  SRR4302536.2844450/1‑94 (MQ=60)
                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT                                >  SRR4302536.2370760/1‑94 (MQ=60)
                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT                                >  SRR4302536.5557380/1‑94 (MQ=60)
                                                                TCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATG                               >  SRR4302536.4728648/1‑94 (MQ=60)
                                                                TCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATG                               >  SRR4302536.6935019/1‑94 (MQ=60)
                                                                 CCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGG                              >  SRR4302536.2792265/1‑94 (MQ=60)
                                                                  CTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGC                             >  SRR4302536.5608419/1‑94 (MQ=60)
                                                                   TGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCG                            <  SRR4302536.3353283/94‑1 (MQ=60)
                                                                   TGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCG                            <  SRR4302536.5875164/94‑1 (MQ=60)
                                                                    GTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGA                           <  SRR4302536.2178803/94‑1 (MQ=60)
                                                                    GTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGA                           <  SRR4302536.6165274/94‑1 (MQ=60)
                                                                    GTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGA                           >  SRR4302536.6092711/1‑94 (MQ=60)
                                                                       AATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATG                        >  SRR4302536.6656409/1‑94 (MQ=60)
                                                                       AATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATG                        <  SRR4302536.1136430/94‑1 (MQ=60)
                                                                         TGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAG                      <  SRR4302536.2036764/94‑1 (MQ=60)
                                                                         TGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAG                      <  SRR4302536.2659897/94‑1 (MQ=60)
                                                                           TTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCAGAGGCGGAAAAAATGGCGGATGAGCG                    <  SRR4302536.3038565/94‑1 (MQ=60)
                                                                           TTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCA                    >  SRR4302536.6599055/1‑94 (MQ=60)
                                                                           TTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCA                    <  SRR4302536.1907278/94‑1 (MQ=60)
                                                                           TTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCA                    <  SRR4302536.6311673/94‑1 (MQ=60)
                                                                            TAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAA                   >  SRR4302536.6930674/1‑94 (MQ=60)
                                                                             AGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAA                  >  SRR4302536.624976/1‑94 (MQ=60)
                                                                              GCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAT                 >  SRR4302536.3389623/1‑94 (MQ=60)
                                                                              GCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAT                 <  SRR4302536.5947946/94‑1 (MQ=60)
                                                                              GCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAT                 <  SRR4302536.6842425/94‑1 (MQ=60)
                                                                              GCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAT                 <  SRR4302536.228853/94‑1 (MQ=60)
                                                                               CGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATT                <  SRR4302536.2667270/94‑1 (MQ=60)
                                                                                 AACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGC              >  SRR4302536.2631666/1‑94 (MQ=60)
                                                                                  ACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCT             <  SRR4302536.185403/94‑1 (MQ=60)
                                                                                   CTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTC            <  SRR4302536.6568003/94‑1 (MQ=60)
                                                                                    TGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCG           >  SRR4302536.6159415/1‑94 (MQ=60)
                                                                                    TGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCG           >  SRR4302536.923499/1‑94 (MQ=60)
                                                                                     GGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGT          >  SRR4302536.6417691/1‑94 (MQ=60)
                                                                                     GGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGT          >  SRR4302536.3088219/1‑94 (MQ=60)
                                                                                     GGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGT          >  SRR4302536.4477248/1‑94 (MQ=60)
                                                                                       AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA        <  SRR4302536.1257495/94‑1 (MQ=60)
                                                                                       AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA        >  SRR4302536.3460009/1‑94 (MQ=60)
                                                                                       AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA        >  SRR4302536.6791506/1‑94 (MQ=60)
                                                                                       AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA        >  SRR4302536.4068578/1‑94 (MQ=60)
                                                                                       AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA        <  SRR4302536.3983153/94‑1 (MQ=60)
                                                                                        GACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAG       >  SRR4302536.2397150/1‑94 (MQ=60)
                                                                                         ACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGG      <  SRR4302536.3839722/94‑1 (MQ=60)
                                                                                         ACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGG      <  SRR4302536.63134/94‑1 (MQ=60)
                                                                                         ACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGG      >  SRR4302536.4753430/1‑94 (MQ=60)
                                                                                          CAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGT     >  SRR4302536.5107982/1‑94 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAACTTGCTCGTCAGGTT    >  SRR4302536.2333303/1‑94 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT    >  SRR4302536.3049478/1‑94 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT    >  SRR4302536.1650569/1‑94 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT    <  SRR4302536.1227111/94‑1 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT    <  SRR4302536.4449444/94‑1 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT    <  SRR4302536.4600998/94‑1 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGCT    >  SRR4302536.5877285/1‑94 (MQ=60)
                                                                                             CGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTTGA  >  SRR4302536.6415568/1‑94 (MQ=60)
                                                                                             |                                                                                             
GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTTGA  >  NC_000913/4103548‑4103734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑