Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,149,200 |
G→A |
A493V (GCG→GTG) |
ppc ← |
phosphoenolpyruvate carboxylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,149,200 | 0 | G | A | 98.5%
| 426.6
/ ‑3.5
| 130 | A493V (GCG→GTG) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base A (67/61); total (69/61) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.23e-01 |
Only 100 of 135 total aligned reads displayed.
TTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTT > NC_000913/4149110‑4149290
|
ttGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCAct > 1:1294281/1‑93 (MQ=255)
ttGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCAct > 1:4227725/1‑93 (MQ=255)
gcagcTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCActtctt > 1:4735827/1‑93 (MQ=255)
gcagcTGGGTCATGACATCGTTGGCGTTGGTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCActtctt < 1:1512033/93‑1 (MQ=255)
cagcTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCttt > 2:1407416/1‑93 (MQ=255)
agcTGGGCCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGTAGAAACCGGCATCGCAAACCCGATACCCACTACTTTc > 2:2445468/1‑93 (MQ=255)
gcTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGCGCAACCGGCATCGCAAACCCGATACACACTTCTTTca > 1:1902323/1‑93 (MQ=255)
gcTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTca > 2:883077/1‑93 (MQ=255)
gcTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTca < 1:3829805/93‑1 (MQ=255)
gcTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTca > 2:3364787/1‑93 (MQ=255)
gggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAACCAGCGGAGAAACCGTCATCGCAAACCCGATACCCACTTCTTTcagca > 1:4651447/1‑93 (MQ=255)
gggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagca < 1:1420445/93‑1 (MQ=255)
gggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagca > 1:4651446/1‑93 (MQ=255)
gggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagca > 2:1121526/1‑93 (MQ=255)
tCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagca < 2:488550/93‑1 (MQ=255)
aTGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAgg > 1:674164/1‑93 (MQ=255)
aTGACATCGTTGGCGTTGTTCAGATCACCGAGGCTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAgg < 2:471191/93‑1 (MQ=255)
tGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGt < 1:218911/93‑1 (MQ=255)
aCATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTgg < 2:278906/93‑1 (MQ=255)
aCATCGTTGGCGTTGTTCAGATCATCGAGGG‑TTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGa > 1:2729509/1‑93 (MQ=255)
cATCGTTGGAGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGa < 1:4366401/93‑1 (MQ=255)
aTCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGAc < 1:3555202/93‑1 (MQ=255)
tCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGGGGGCa > 2:46048/1‑93 (MQ=255)
gTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGc > 2:3957001/1‑93 (MQ=255)
ttGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGcc > 2:3116020/1‑93 (MQ=255)
ttGGCGTTGTTCAGATCATCGAGGGCTTCAAACAGCGGAGCAACCCGCACCGCAAACCCGATACTCACTTCTTTCAGCAGCAGGTGGACAGcc > 2:34288/1‑93 (MQ=255)
tGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCa < 2:2604504/93‑1 (MQ=255)
ggCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAg > 2:4335038/1‑93 (MQ=255)
cGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTa < 2:1229733/93‑1 (MQ=255)
gttgttCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTAc > 2:1058185/1‑93 (MQ=255)
ttgttCAGATCATCGAGGGCTTCCAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACg > 1:879382/1‑93 (MQ=255)
tgttCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGt > 1:2365903/1‑93 (MQ=255)
gttCAGATCATCGAGGGCTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGta > 2:3192211/1‑92 (MQ=255)
taGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGa < 1:842192/92‑1 (MQ=255)
cAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGa < 2:2742569/93‑1 (MQ=255)
aGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGGACGTCGGAc > 2:2458467/1‑93 (MQ=255)
gATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACg > 2:3359739/1‑93 (MQ=255)
gATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACg < 1:1465179/93‑1 (MQ=255)
atcatcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACgg > 2:2584014/1‑93 (MQ=255)
tcatcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGc < 2:435704/93‑1 (MQ=255)
tcatcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGc > 2:2981886/1‑93 (MQ=255)
atcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGt > 1:4255838/1‑93 (MQ=255)
atcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGt < 2:3251456/93‑1 (MQ=255)
tcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtt < 1:1173416/93‑1 (MQ=255)
tcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtt > 1:2451541/1‑93 (MQ=255)
tcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtt > 1:1779582/1‑93 (MQ=255)
cGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGttt < 1:286210/93‑1 (MQ=255)
cGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGttt < 2:1115038/93‑1 (MQ=255)
gAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtttt < 2:2970552/93‑1 (MQ=255)
gAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATAACCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtttt < 2:1704235/93‑1 (MQ=255)
aGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTc < 1:4581135/93‑1 (MQ=255)
gggTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCg < 2:1203161/93‑1 (MQ=255)
gggTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCg > 2:649151/1‑93 (MQ=255)
gTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGcc > 1:3102179/1‑93 (MQ=255)
gTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGcc > 1:3579504/1‑93 (MQ=255)
gTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGcc > 2:3829042/1‑93 (MQ=255)
tttCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCa > 1:2029599/1‑93 (MQ=255)
tttCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCa > 2:549213/1‑93 (MQ=255)
tttCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGGTTTCGCCa > 1:2338789/1‑93 (MQ=255)
tCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATc > 2:3223438/1‑93 (MQ=255)
aaaCAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCga < 1:2931063/93‑1 (MQ=255)
aaCAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGCCGGCGTTGTCGCCCTCcag > 2:1175956/1‑93 (MQ=255)
aCAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCgaga > 2:3693529/1‑93 (MQ=255)
aCAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCgaga < 2:1469548/93‑1 (MQ=255)
cAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGAt < 2:3560358/93‑1 (MQ=255)
aGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATc > 1:2733349/1‑93 (MQ=255)
gCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCa > 1:3777490/1‑93 (MQ=255)
cGGAGCAACCGGCATCGCAAACCCGATCCCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCAc < 1:1910048/93‑1 (MQ=255)
ggAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACg < 2:880840/93‑1 (MQ=255)
gAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGt > 1:495615/1‑93 (MQ=255)
cAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAgg < 1:1747075/93‑1 (MQ=255)
aCCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAggcg < 2:4445342/93‑1 (MQ=255)
ccGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAggcgg < 1:4483098/93‑1 (MQ=255)
ccGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAggcgg > 1:2912158/1‑93 (MQ=255)
ggCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCa > 2:3237005/1‑93 (MQ=255)
gCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCaa < 1:1697752/93‑1 (MQ=255)
cATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAAt < 1:3495097/93‑1 (MQ=255)
aTCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATg > 1:3817244/1‑93 (MQ=255)
aTCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATg < 2:790492/93‑1 (MQ=255)
tCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATgg < 2:4646572/93‑1 (MQ=255)
tCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATgg < 1:3263479/93‑1 (MQ=255)
tCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATgg < 2:3897051/93‑1 (MQ=255)
cGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGa < 2:1456302/93‑1 (MQ=255)
gCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAg > 2:2051125/1‑93 (MQ=255)
gCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAg > 2:416830/1‑93 (MQ=255)
gCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAg > 1:527226/1‑93 (MQ=255)
aaaCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGcc > 2:2973703/1‑93 (MQ=255)
aaaCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGcc > 1:3392770/1‑93 (MQ=255)
aaaCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGcc < 2:1685915/93‑1 (MQ=255)
aaCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCt > 1:4354034/1‑93 (MQ=255)
aCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCtt > 1:107318/1‑93 (MQ=255)
gATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCgg < 1:4107262/93‑1 (MQ=255)
gATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCCGTTTCGCCATCGAGGTCACGTAGGCGGCAATGGAGCCGTgggg > 2:1886344/1‑93 (MQ=255)
gATACCCACTTCTTTCAGCAGCAGGCGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCgg > 2:1886345/1‑93 (MQ=255)
tACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTg > 1:819803/1‑93 (MQ=255)
tACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTg > 2:3025725/1‑93 (MQ=255)
tACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTg > 2:843167/1‑93 (MQ=255)
tACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTg > 1:4269179/1‑93 (MQ=255)
cccACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCt > 1:1531423/1‑93 (MQ=255)
ccGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCtt > 1:1555271/1‑93 (MQ=255)
|
TTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTT > NC_000913/4149110‑4149290
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG > NC_000913/4149107‑4149293
|
ATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCA < SRR4302544.603915/94‑1 (MQ=60)
ATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACT > SRR4302544.1307026/1‑94 (MQ=60)
ATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACT > SRR4302544.4270799/1‑94 (MQ=60)
AGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTT > SRR4302544.4782516/1‑94 (MQ=60)
GCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTT < SRR4302544.1527020/94‑1 (MQ=60)
GCAGCTGGGTCATGACATCGTTGGCGTTGGTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTT < SRR4302544.1527019/94‑1 (MQ=60)
AGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGCGCAACCGGCATCGCAAACCCGATACACACTTCTTTCA > SRR4302544.1920703/1‑94 (MQ=60)
GCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAG < SRR4302544.3867781/94‑1 (MQ=60)
CTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGC > SRR4302544.48273/1‑94 (MQ=60)
TGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAACCAGCGGAGAAACCGTCATCGCAAACCCGATACCCACTTCTTTCAGCA > SRR4302544.4697484/1‑94 (MQ=60)
TGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCA > SRR4302544.4697483/1‑94 (MQ=60)
GGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAG < SRR4302544.1434589/94‑1 (MQ=60)
GGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGC < SRR4302544.2233897/94‑1 (MQ=60)
CATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGG > SRR4302544.680834/1‑94 (MQ=60)
TGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTG > SRR4302544.72885/1‑94 (MQ=60)
TGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTG < SRR4302544.221174/94‑1 (MQ=60)
GACATCGTTGGCGTTGTTCAGATCATCGAGGGGTTCAAAAAGCGGCCCAACCGGCATCGCAAACCCGATACCCACTTCCTTAAGCAGCAGG‑GGA > SRR4302544.2755810/1‑94 (MQ=60)
GACATCGTTGGCGTTGTTCAGATCATCGAGGG‑TTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGA > SRR4302544.2755812/1‑94 (MQ=60)
CATCGTTGGAGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGAC < SRR4302544.4410687/94‑1 (MQ=60)
ATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACA < SRR4302544.3589271/94‑1 (MQ=60)
GTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCC < SRR4302544.1926256/94‑1 (MQ=60)
CGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTAC < SRR4302544.4675330/94‑1 (MQ=60)
GTTGTTCAGATCATCGAGGGCTTCCAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACG > SRR4302544.888102/1‑94 (MQ=60)
TTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGT > SRR4302544.2388292/1‑94 (MQ=60)
TGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTC < SRR4302544.4459152/94‑1 (MQ=60)
TTCAGATCAGCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGG < SRR4302544.994648/94‑1 (MQ=60)
TAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGAC < SRR4302544.850503/94‑1 (MQ=60)
GATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGG < SRR4302544.1479696/94‑1 (MQ=60)
ttatcagaagttgcagACAGCGGAGCAACCTGCATGTCAACCCCGATACCCGCTTCTTTCAGCAGCAGGTTGACAGCCAGTACGTCGGACGGCG < SRR4302544.1761967/78‑1 (MQ=60)
TCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCG < SRR4302544.1761966/94‑1 (MQ=60)
CATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGT > SRR4302544.4299221/1‑94 (MQ=60)
ATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTT > SRR4302544.1796989/1‑94 (MQ=60)
ATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTT > SRR4302544.2474923/1‑94 (MQ=60)
TCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTT < SRR4302544.1185124/94‑1 (MQ=60)
CGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTT < SRR4302544.289185/94‑1 (MQ=60)
AGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCG < SRR4302544.4626760/94‑1 (MQ=60)
GGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCC > SRR4302544.3131706/1‑94 (MQ=60)
GGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCC > SRR4302544.3613841/1‑94 (MQ=60)
GTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCA > SRR4302544.2049256/1‑94 (MQ=60)
GTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGGTTTCGCCA > SRR4302544.2360950/1‑94 (MQ=60)
TTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCAT < SRR4302544.2677237/94‑1 (MQ=60)
GTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCAT < SRR4302544.1415372/94‑1 (MQ=60)
TCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCG < SRR4302544.3800221/94‑1 (MQ=60)
AAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAG < SRR4302544.2959226/94‑1 (MQ=60)
AAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAG < SRR4302544.3898699/94‑1 (MQ=60)
CAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATC > SRR4302544.2759695/1‑94 (MQ=60)
AGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCA > SRR4302544.3814916/1‑94 (MQ=60)
AGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCA < SRR4302544.296359/94‑1 (MQ=60)
GCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCAC < SRR4302544.2889048/94‑1 (MQ=60)
CGGAGCAACCGGCATCGCAAACCCGATCCCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACG < SRR4302544.1928506/94‑1 (MQ=60)
GGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGT > SRR4302544.500488/1‑94 (MQ=60)
AGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAG > SRR4302544.3485170/1‑94 (MQ=60)
GCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTCCGTCGGGCGTCGTTTTCGCCATCGAGATCACGTAGG < SRR4302544.2529604/94‑1 (MQ=60)
CAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGC < SRR4302544.1764179/94‑1 (MQ=60)
ACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGG > SRR4302544.2940172/1‑94 (MQ=60)
CCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGC < SRR4302544.4528149/94‑1 (MQ=60)
GCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAAT < SRR4302544.1714504/94‑1 (MQ=60)
CATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATG < SRR4302544.3528421/94‑1 (MQ=60)
CATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATG > SRR4302544.3855083/1‑94 (MQ=60)
TCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGA < SRR4302544.3294645/94‑1 (MQ=60)
CGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAG > SRR4302544.532457/1‑94 (MQ=60)
CAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCC > SRR4302544.3425206/1‑94 (MQ=60)
AAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCT > SRR4302544.4398254/1‑94 (MQ=60)
AACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTT > SRR4302544.108300/1‑94 (MQ=60)
GATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGT < SRR4302544.4148101/94‑1 (MQ=60)
ATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTG > SRR4302544.827818/1‑94 (MQ=60)
ATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTG > SRR4302544.4312745/1‑94 (MQ=60)
ATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTG > SRR4302544.430352/1‑94 (MQ=60)
ACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCT > SRR4302544.1546626/1‑94 (MQ=60)
CCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTT > SRR4302544.1570747/1‑94 (MQ=60)
CACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCG < SRR4302544.2315664/94‑1 (MQ=60)
CCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG < SRR4302544.4413268/94‑1 (MQ=60)
CCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG < SRR4302544.3593026/94‑1 (MQ=60)
CCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG < SRR4302544.3593025/94‑1 (MQ=60)
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ATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG > NC_000913/4149107‑4149293
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
