Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1357 179.3 9500450 96.1% 9129932 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,203,421 A→G V30A (GTT→GCT)  purD ← phosphoribosylglycinamide synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,203,4210AG99.1% 359.5 / ‑4.5 113V30A (GTT→GCT) purDphosphoribosylglycinamide synthetase
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (72/39);  total (74/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.53e-01

Only 100 of 133 total aligned reads displayed.

GCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAACAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATC  >  NC_000913/4203331‑4203510
                                                                                          |                                                                                         
gCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAgcagca                                                                                         >  1:1000821/1‑93 (MQ=255)
gCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAgcagca                                                                                         >  2:201110/1‑93 (MQ=255)
  gAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCaaa                                                                                       >  2:1758975/1‑93 (MQ=255)
   aaaTCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCaaaa                                                                                      >  2:4289889/1‑93 (MQ=255)
   aaaTCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCaaaa                                                                                      >  2:1379640/1‑93 (MQ=255)
   aaaTCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCaaaa                                                                                      >  1:3566145/1‑93 (MQ=255)
    aaTCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCaaaaa                                                                                     >  1:2985216/1‑93 (MQ=255)
     aTCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAAc                                                                                    <  1:2622601/93‑1 (MQ=255)
      tCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACa                                                                                   >  2:3265676/1‑93 (MQ=255)
      tCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACa                                                                                   >  2:3199582/1‑93 (MQ=255)
       ccAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAg                                                                                  >  1:1028395/1‑93 (MQ=255)
       ccAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAg                                                                                  >  2:1761582/1‑93 (MQ=255)
        cAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGt                                                                                 <  1:1887044/93‑1 (MQ=255)
        cAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCACCAAAAACAGt                                                                                 >  2:3715223/1‑93 (MQ=255)
         aaCAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtc                                                                                >  2:97526/1‑93 (MQ=255)
         aaCAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtc                                                                                >  1:1050350/1‑93 (MQ=255)
         aaCAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtc                                                                                >  1:1566739/1‑93 (MQ=255)
          aCAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTATGCAGCGCGGGCTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACActct                                                                               >  2:14464/1‑93 (MQ=255)
           cAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtctc                                                                              <  1:4121383/93‑1 (MQ=255)
            aGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTAGCCGGAGCAGCAAAAACAGTCTCa                                                                             >  2:2601861/1‑93 (MQ=255)
             gcgcCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCaa                                                                            >  2:713341/1‑93 (MQ=255)
              cgcCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAAc                                                                           <  1:4027781/93‑1 (MQ=255)
                 cGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAg                                                                        >  1:3529479/1‑93 (MQ=255)
                  gggATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgc                                                                       >  1:855796/1‑93 (MQ=255)
                  gggATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgc                                                                       >  1:1825261/1‑93 (MQ=255)
                  cggATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgc                                                                       <  1:1240533/92‑1 (MQ=255)
                   ggATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcg                                                                      >  1:427523/1‑93 (MQ=255)
                   ggATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcg                                                                      <  1:3715743/93‑1 (MQ=255)
                   ggATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcg                                                                      >  1:3763365/1‑93 (MQ=255)
                    gATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcgg                                                                     >  2:899802/1‑93 (MQ=255)
                     atatCGGTCACGCCAGTAGCAACTTTTTGCAGCGCGGGTTCCAATGCAGTGCGTGCATTACCCGGAGCAGCGAAAACAGTCTCAGCCAgcggc                                                                    <  2:2394916/93‑1 (MQ=255)
                     atatCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcggc                                                                    <  1:4055766/93‑1 (MQ=255)
                     atatCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcggc                                                                    <  1:594801/93‑1 (MQ=255)
                     atatCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcggc                                                                    >  1:561186/1‑93 (MQ=255)
                      tatCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcggcg                                                                   >  2:4603975/1‑93 (MQ=255)
                      tatCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAACAAAAACAGTCTCAACCAgcggcg                                                                   >  2:4036996/1‑93 (MQ=255)
                      tatCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGCGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcggcg                                                                   >  1:2523508/1‑93 (MQ=255)
                        tCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGAc                                                                 <  1:3223077/93‑1 (MQ=255)
                         cGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACt                                                                <  1:761978/93‑1 (MQ=255)
                           gTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTgg                                                              >  2:4001316/1‑93 (MQ=255)
                           gTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTgg                                                              >  1:2309043/1‑93 (MQ=255)
                             cACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGc                                                            >  2:2105884/1‑93 (MQ=255)
                             cACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGc                                                            <  2:408462/93‑1 (MQ=255)
                              aCGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGCGCAGCAAAAACAGTCTCAACCAACAGCGACTGGGcc                                                           >  1:3750721/1‑93 (MQ=255)
                              aCGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGcc                                                           <  2:963474/93‑1 (MQ=255)
                                gCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGc                                                         >  2:2001538/1‑93 (MQ=255)
                                 ccAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCt                                                        >  1:4415356/1‑93 (MQ=255)
                                 ccAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCt                                                        >  1:781819/1‑93 (MQ=255)
                                  cAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCtt                                                       >  2:2314575/1‑93 (MQ=255)
                                  cAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCtt                                                       <  1:4276237/93‑1 (MQ=255)
                                  cAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCtt                                                       >  1:3783268/1‑93 (MQ=255)
                                   aaTAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCttt                                                      >  2:2607923/1‑93 (MQ=255)
                                   aaTAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCttt                                                      >  1:3367461/1‑93 (MQ=255)
                                   aaTAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCttt                                                      >  1:1244997/1‑93 (MQ=255)
                                     tAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTcc                                                    >  1:150550/1‑93 (MQ=255)
                                     tAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTcc                                                    >  1:4464839/1‑93 (MQ=255)
                                      aGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCa                                                   >  2:1383079/1‑93 (MQ=255)
                                      aGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTATCAACCAGCGGCGACTGGGCCGCTTTCCa                                                   <  1:462102/93‑1 (MQ=255)
                                         aaCGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGc                                                >  2:3752696/1‑93 (MQ=255)
                                          aCGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGcc                                               >  2:2413907/1‑93 (MQ=255)
                                             ttgtGCAGCGCGGGTTCCAGTGCAGTCCCTGCATTACCCGGAGCAGCAAAAACAGTCGCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAgc                                            <  2:1846072/90‑1 (MQ=255)
                                                 gCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGt                                        <  1:3067575/93‑1 (MQ=255)
                                                 gCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGt                                        <  1:1163040/93‑1 (MQ=255)
                                                    gcgcGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCt                                     >  1:2963941/1‑93 (MQ=255)
                                                    gcgcGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCt                                     >  1:198745/1‑93 (MQ=255)
                                                        gggTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTcgcg                                 >  2:3771899/1‑93 (MQ=255)
                                                        gggTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTcgcg                                 >  2:540730/1‑93 (MQ=255)
                                                           ttCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGcgccc                              >  2:4425501/1‑93 (MQ=255)
                                                               agtgcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCccgccg                          >  2:2212362/1‑93 (MQ=255)
                                                               agtgcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCccgccg                          >  2:55826/1‑93 (MQ=255)
                                                                gtgcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTTTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCTCCGCCCGt                         >  1:583378/1‑93 (MQ=255)
                                                                gtgcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGt                         <  1:1491804/93‑1 (MQ=255)
                                                                 tgcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGtt                        <  1:2908173/93‑1 (MQ=255)
                                                                  gcagtgcTTCCATCACCCGGAGCGGCAAAAACTGTCCCAACCAGCGGCGACTGGGCCGCTTTCCGGGCCAGCGCGTGCTGGCCCCCGCCGTTa                       <  2:1538020/93‑1 (MQ=255)
                                                                  gcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTa                       >  1:961145/1‑93 (MQ=255)
                                                                   cagtgcCTGCATTCCCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTAc                      <  1:903498/93‑1 (MQ=255)
                                                                    agtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTAcc                     >  2:473251/1‑93 (MQ=255)
                                                                     gtgcCTGCATTACCCGGAGCAGCAAAACCAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCa                    <  2:3776222/93‑1 (MQ=255)
                                                                     gtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCATGCCAGCGCGTGCTCGCCCCCGCCGTTACCa                    >  2:1065107/1‑93 (MQ=255)
                                                                     gtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCa                    >  2:1065106/1‑93 (MQ=255)
                                                                      tgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCaa                   <  2:4631086/93‑1 (MQ=255)
                                                                        ccTGCATTCCGCGAAGGAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATc                 <  2:4446957/93‑1 (MQ=255)
                                                                        ccTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATc                 <  1:587438/93‑1 (MQ=255)
                                                                          tGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCAc               <  1:250993/93‑1 (MQ=255)
                                                                          tGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGAGCGTGCTCGCGCCCGCCGTTACCAATCAc               >  2:3399354/1‑93 (MQ=255)
                                                                           gCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACt              >  2:4665203/1‑93 (MQ=255)
                                                                             aTTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTaa            <  2:3264799/93‑1 (MQ=255)
                                                                              ttACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAAt           <  2:2938669/93‑1 (MQ=255)
                                                                              ttACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAAt           >  1:4723999/1‑93 (MQ=255)
                                                                               tACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATa          >  2:1661553/1‑93 (MQ=255)
                                                                                 cccGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCTATCACTAATACt        >  1:2233185/1‑93 (MQ=255)
                                                                                  cgggAGCAGCAAAAACAGTCTCAGCCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACtt       <  2:2284816/91‑1 (MQ=255)
                                                                                  ccGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACtt       <  1:1524132/93‑1 (MQ=255)
                                                                                    ggAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTc     <  2:506664/93‑1 (MQ=255)
                                                                                     gAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCa    <  1:3998893/93‑1 (MQ=255)
                                                                                      agcagcAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCACTCACTAATACTTTCAt   >  2:675631/1‑93 (MQ=255)
                                                                                      agcagcAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCAt   <  2:169119/93‑1 (MQ=255)
                                                                                       gcagcaAAAACAGTCTCAACCAGCGGCGACTGGGCCGGTTTTCACGCCAGCGCGTGCTCGCGGCCGCCGTTACCAATCACTACTACTTTAATc  >  2:2510204/1‑93 (MQ=255)
                                                                                       gcagcaAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATc  <  1:1089907/93‑1 (MQ=255)
                                                                                       gcagcaAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATc  >  2:3340061/1‑93 (MQ=255)
                                                                                          |                                                                                         
GCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAACAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATC  >  NC_000913/4203331‑4203510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAACAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTATT  >  NC_000913/4203330‑4203514
                                                                                           |                                                                                             
TGCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCA                                                                                             >  SRR4302544.1010738/1‑94 (MQ=60)
TGCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCA                                                                                             <  SRR4302544.779239/94‑1 (MQ=60)
   GAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAA                                                                                          >  SRR4302544.3600335/1‑94 (MQ=60)
   GAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAA                                                                                          >  SRR4302544.158007/1‑94 (MQ=60)
    AAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAA                                                                                         >  SRR4302544.3013842/1‑94 (MQ=60)
     AATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAAC                                                                                        <  SRR4302544.127615/94‑1 (MQ=60)
      ATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACA                                                                                       <  SRR4302544.2647751/94‑1 (MQ=60)
       TCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAG                                                                                      >  SRR4302544.1038648/1‑94 (MQ=60)
         CAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTC                                                                                    >  SRR4302544.1060756/1‑94 (MQ=60)
         CAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTC                                                                                    <  SRR4302544.1905277/94‑1 (MQ=60)
         CAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTC                                                                                    >  SRR4302544.1582268/1‑94 (MQ=60)
            CAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCA                                                                                 <  SRR4302544.4162291/94‑1 (MQ=60)
             gagtcccgggtatcggttaacCCAATAGCAACGTTTTGCAGCGCGGGTTTCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAA                                                                                <  SRR4302544.3117357/73‑1 (MQ=60)
              GCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAAC                                                                               <  SRR4302544.931048/94‑1 (MQ=60)
               CGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACC                                                                              <  SRR4302544.4067899/94‑1 (MQ=60)
                 CCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAG                                                                            <  SRR4302544.3044089/94‑1 (MQ=60)
                 CCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAG                                                                            >  SRR4302544.3563223/1‑94 (MQ=60)
                  CGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGC                                                                           >  SRR4302544.1843038/1‑94 (MQ=60)
                  CGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGC                                                                           >  SRR4302544.864263/1‑94 (MQ=60)
                   GGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCG                                                                          >  SRR4302544.431868/1‑94 (MQ=60)
                   GGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCG                                                                          >  SRR4302544.3800707/1‑94 (MQ=60)
                   CGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCG                                                                          <  SRR4302544.1252782/94‑1 (MQ=60)
                    GGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGG                                                                         >  SRR4302544.4331688/1‑94 (MQ=60)
                    GGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGG                                                                         <  SRR4302544.3899298/94‑1 (MQ=60)
                    GGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGG                                                                         <  SRR4302544.3752705/94‑1 (MQ=60)
                     GATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGC                                                                        >  SRR4302544.566670/1‑94 (MQ=60)
                      ATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCG                                                                       <  SRR4302544.600638/94‑1 (MQ=60)
                      ATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCG                                                                       <  SRR4302544.4096161/94‑1 (MQ=60)
                      ATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGCGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCG                                                                       >  SRR4302544.2547756/1‑94 (MQ=60)
                         TCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACT                                                                    <  SRR4302544.3253850/94‑1 (MQ=60)
                          CGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTG                                                                   <  SRR4302544.769410/94‑1 (MQ=60)
                           GGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCGGAAAAAACAGCCTCAACAAGCGGCGACTGG                                                                  >  SRR4302544.3547651/1‑94 (MQ=60)
                           GGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGG                                                                  >  SRR4302544.2330872/1‑94 (MQ=60)
                              CACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGCGCAGCAAAAACAGTCTCAACCAACAGCGACTGGGCC                                                               >  SRR4302544.3787970/1‑94 (MQ=60)
                                 GCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCT                                                            >  SRR4302544.789396/1‑94 (MQ=60)
                                 GCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCT                                                            >  SRR4302544.4459931/1‑94 (MQ=60)
                                  CCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTT                                                           >  SRR4302544.3820733/1‑94 (MQ=60)
                                   CAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTT                                                          <  SRR4302544.4319895/94‑1 (MQ=60)
                                   CAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTT                                                          >  SRR4302544.3399608/1‑94 (MQ=60)
                                   CAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTT                                                          >  SRR4302544.1257267/1‑94 (MQ=60)
                                     ATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCC                                                        >  SRR4302544.4509765/1‑94 (MQ=60)
                                     ATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCC                                                        >  SRR4302544.151999/1‑94 (MQ=60)
                                       AGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTATCAACCAGCGGCGACTGGGCCGCTTTCCAG                                                      <  SRR4302544.466641/94‑1 (MQ=60)
                                                  GCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTG                                           <  SRR4302544.3096815/94‑1 (MQ=60)
                                                  GCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTG                                           <  SRR4302544.1174636/94‑1 (MQ=60)
                                                    AGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCT                                         >  SRR4302544.2992383/1‑94 (MQ=60)
                                                    AGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCT                                         >  SRR4302544.200755/1‑94 (MQ=60)
                                                           GTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCC                                  >  SRR4302544.1925697/1‑94 (MQ=60)
                                                                AGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTTTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCtccgcccgt                             >  SRR4302544.589100/1‑85 (MQ=60)
                                                                AGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGT                             >  SRR4302544.589101/1‑94 (MQ=60)
                                                                 GTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTT                            <  SRR4302544.1506556/94‑1 (MQ=60)
                                                                  TGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTA                           >  SRR4302544.970583/1‑94 (MQ=60)
                                                                  TGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTA                           <  SRR4302544.2936155/94‑1 (MQ=60)
                                                                   GCAGTGCCTGCATTGCCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTAC                          <  SRR4302544.253033/94‑1 (MQ=60)
                                                                    CAGTGCCTGCATTCCCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACC                         <  SRR4302544.912443/94‑1 (MQ=60)
                                                                    CAGTGCCTGCATACCCGGAGCCGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCA                        >  SRR4302544.4699727/1‑94 (MQ=60)
                                                                         CCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCA                    <  SRR4302544.593200/94‑1 (MQ=60)
                                                                           TGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACT                  <  SRR4302544.253632/94‑1 (MQ=60)
                                                                             CATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAA                <  SRR4302544.1553499/94‑1 (MQ=60)
                                                                              ATTCCCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAAT               <  SRR4302544.1135677/94‑1 (MQ=60)
                                                                              ATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAAT               >  SRR4302544.4770635/1‑94 (MQ=60)
                                                                              ATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAAT               <  SRR4302544.4158860/94‑1 (MQ=60)
                                                                               TCACCCGAAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGTGCCGCTTTCCAGGCCAGCGCGTCCTCGCGCCCGCCGTTACCAATCGCTAATA              <  SRR4302544.3796958/94‑1 (MQ=60)
                                                                                TACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATAC             >  SRR4302544.269325/1‑94 (MQ=60)
                                                                                 ACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCTATCACTAATACT            >  SRR4302544.2254189/1‑94 (MQ=60)
                                                                                  CCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTT           <  SRR4302544.3772849/94‑1 (MQ=60)
                                                                                   CCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTT          <  SRR4302544.1539256/94‑1 (MQ=60)
                                                                                   CCGGACCAGCAAAAACAGTCTCAGCCAGCGGCGACTGGCCCGCTTTCCAGTCCGGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTT          <  SRR4302544.77693/94‑1 (MQ=60)
                                                                                    CGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGCCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTC         <  SRR4302544.877970/94‑1 (MQ=60)
                                                                                      GAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCAT       <  SRR4302544.4038690/94‑1 (MQ=60)
                                                                                        GCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCT     <  SRR4302544.1100747/94‑1 (MQ=60)
                                                                                         CAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTA    >  SRR4302544.2560881/1‑94 (MQ=60)
                                                                                         CAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTA    >  SRR4302544.2676395/1‑94 (MQ=60)
                                                                                         CAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCCCGCCCGCCGTTACCAATCACTAATACTTTCAGCTA    >  SRR4302544.2560882/1‑94 (MQ=60)
                                                                                           GCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTATT  <  SRR4302544.403141/94‑1 (MQ=60)
                                                                                           GCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGCCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTATT  <  SRR4302544.1827314/94‑1 (MQ=60)
                                                                                           |                                                                                             
TGCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAACAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTATT  >  NC_000913/4203330‑4203514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: