Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,203,421	A→G	V30A (GTT→GCT)	purD ←	phosphoribosylglycinamide synthetase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,203,421	0	A	G	100.0%	792.9 / NA	240	V30A (GTT→GCT)	purD	phosphoribosylglycinamide synthetase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (128/112); total (128/112)

Only 100 of 255 total aligned reads displayed.

GCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAACAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATC  >  NC_000913/4203331‑4203510

 cGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAgcagcac                                                                                        <  2:838917/93‑2 (MQ=255)

 cGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGcagcaa                                                                                        <  1:3953019/93‑1 (MQ=255)

    aaTCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCaaaaa                                                                                     >  2:6340364/1‑93 (MQ=255)

    aaTCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCaaaaa                                                                                     <  2:1857541/93‑1 (MQ=255)

     aTCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAAc                                                                                    >  1:6015461/1‑93 (MQ=255)

      tCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTTCCCGGAGCAGCAAAAACa                                                                                   <  1:423596/93‑1 (MQ=255)

      gccAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACa                                                                                   <  1:6640450/92‑1 (MQ=255)

      accAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACa                                                                                   <  2:6168940/92‑1 (MQ=255)

       ccAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAg                                                                                  <  1:557165/93‑1 (MQ=255)

        cAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGt                                                                                 >  1:811653/1‑93 (MQ=255)

        cAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGt                                                                                 >  1:2449004/1‑93 (MQ=255)

        cAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGt                                                                                 >  1:3025292/1‑93 (MQ=255)

         aaCAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtc                                                                                <  1:4377475/93‑1 (MQ=255)

         aaCAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtc                                                                                <  1:3503647/93‑1 (MQ=255)

          aCAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtct                                                                               <  2:4894160/93‑1 (MQ=255)

          aCAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtct                                                                               >  2:3702053/1‑93 (MQ=255)

           cAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtctc                                                                              <  1:2921412/93‑1 (MQ=255)

           cAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtctc                                                                              >  2:1153772/1‑93 (MQ=255)

           cAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtctc                                                                              >  1:1359640/1‑93 (MQ=255)

           cAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGtctc                                                                              <  2:4028620/93‑1 (MQ=255)

            aGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCa                                                                             >  2:1197760/1‑93 (MQ=255)

             gcgcCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCaa                                                                            >  2:5515343/1‑93 (MQ=255)

             gcgcCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCaa                                                                            <  1:3283872/93‑1 (MQ=255)

               gcCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAAcc                                                                          <  1:3652608/93‑1 (MQ=255)

                ccGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCa                                                                         <  2:315188/93‑1 (MQ=255)

                   ggATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcg                                                                      >  1:6109608/1‑93 (MQ=255)

                    gATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcgg                                                                     <  2:2770576/93‑1 (MQ=255)

                     atatCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcggc                                                                    <  1:1596235/93‑1 (MQ=255)

                      tatCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAgcggcg                                                                   <  2:6024687/93‑1 (MQ=255)

                       atCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGa                                                                  <  1:5501998/93‑1 (MQ=255)

                       atCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGa                                                                  <  2:1549314/93‑1 (MQ=255)

                       atCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGAGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCAGCGa                                                                  >  1:6274067/1‑93 (MQ=255)

                        tCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCCGTGCCTGCATTACCCGGAGCCGCAAAAACAGGCTCAACCAGCGGCGAc                                                                 >  1:1751425/1‑93 (MQ=255)

                         cGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACt                                                                <  2:2763680/93‑1 (MQ=255)

                          ggTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTg                                                               <  1:2615980/93‑1 (MQ=255)

                          ggTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTg                                                               >  2:5299606/1‑93 (MQ=255)

                             cACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGc                                                            <  2:4142553/93‑1 (MQ=255)

                               cGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCg                                                          >  1:5683131/1‑93 (MQ=255)

                                 ccAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCt                                                        <  2:3356332/93‑1 (MQ=255)

                                  cAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCtt                                                       <  2:2617547/93‑1 (MQ=255)

                                   aaTAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGTGACTGAGCCGCttt                                                      >  1:3797316/1‑93 (MQ=255)

                                   aaTAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCttt                                                      >  1:4311653/1‑93 (MQ=255)

                                    aTAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTc                                                     <  2:4541310/93‑1 (MQ=255)

                                    aTAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTc                                                     >  2:788398/1‑93 (MQ=255)

                                     tAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTcc                                                    <  1:2805674/93‑1 (MQ=255)

                                     tAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTcc                                                    <  1:267390/93‑1 (MQ=255)

                                     tAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTcc                                                    <  1:30903/93‑1 (MQ=255)

                                     tAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTcc                                                    <  1:3275290/93‑1 (MQ=255)

                                      aGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCa                                                   >  1:4755346/1‑93 (MQ=255)

                                       gCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAg                                                  >  1:2228620/1‑93 (MQ=255)

                                       gCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAg                                                  >  2:2520679/1‑93 (MQ=255)

                                       gCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAg                                                  <  1:1938630/93‑1 (MQ=255)

                                       gCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAg                                                  >  2:4252519/1‑93 (MQ=255)

                                       gCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGAGCCGCTTTCCAg                                                  >  2:5012827/1‑93 (MQ=255)

                                         aaCGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGc                                                >  2:2921933/1‑93 (MQ=255)

                                             ttttGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAgc                                            >  1:1193534/1‑93 (MQ=255)

                                              tttGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAgcg                                           >  2:6651186/1‑93 (MQ=255)

                                               ttGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAgcgc                                          >  2:9704/1‑93 (MQ=255)

                                                 gCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGt                                        >  1:485943/1‑93 (MQ=255)

                                                  cAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTg                                       >  1:1556287/1‑93 (MQ=255)

                                                   aGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGc                                      >  2:222264/1‑93 (MQ=255)

                                                   aGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGc                                      <  2:344576/93‑1 (MQ=255)

                                                      gcgGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTcg                                   <  1:6338154/93‑1 (MQ=255)

                                                        gggTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTcgcg                                 >  1:2946311/1‑93 (MQ=255)

                                                        gggTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTcgcc                                 >  2:5819803/1‑92 (MQ=255)

                                                          gTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGcgcc                               <  1:447366/93‑1 (MQ=255)

                                                           ttCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGcgccc                              >  1:2525535/1‑93 (MQ=255)

                                                             ccAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGcgcccgc                            <  1:6373144/93‑1 (MQ=255)

                                                             ccAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGcgcccgc                            <  1:5208768/93‑1 (MQ=255)

                                                               agtgcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCccgccg                          >  1:4917509/1‑93 (MQ=255)

                                                               agtgcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCccgccg                          <  2:5688909/93‑1 (MQ=255)

                                                                gtgcagtgcCTGCATTACCCGGAGCAGCAAAACCAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGt                         <  1:4117479/93‑1 (MQ=255)

                                                                gtgcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGt                         <  2:4794050/93‑1 (MQ=255)

                                                                gtgcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGt                         >  1:931093/1‑93 (MQ=255)

                                                                gtgcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGt                         >  2:5745425/1‑93 (MQ=255)

                                                                 tgcagtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGtt                        <  2:205261/93‑1 (MQ=255)

                                                                    agtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTAcc                     <  2:4357005/93‑1 (MQ=255)

                                                                     gtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCa                    <  2:3973233/93‑1 (MQ=255)

                                                                     gtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCa                    >  1:1630355/1‑93 (MQ=255)

                                                                     gtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCa                    >  1:5373781/1‑93 (MQ=255)

                                                                     gtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCa                    >  1:5724227/1‑93 (MQ=255)

                                                                     gtgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCa                    >  1:6704272/1‑93 (MQ=255)

                                                                      tgcCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCaa                   <  1:1116380/93‑1 (MQ=255)

                                                                      ggcCGGCATTACCGGGAGCAGCAAAAACAGTCTCACCCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCaa                   <  2:4963684/92‑1 (MQ=255)

                                                                        ccTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATc                 <  2:3548017/93‑1 (MQ=255)

                                                                         cTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGTGCAGCGCGTGCTCGCGCCCGCCGCTACCAATCa                >  1:5314486/1‑93 (MQ=255)

                                                                         cTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCa                <  2:507681/93‑1 (MQ=255)

                                                                         cTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCa                <  2:5948528/93‑1 (MQ=255)

                                                                         cTGCATTACCCGGAGCAGCAAAAACAGTCTAAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCa                <  2:1576353/93‑1 (MQ=255)

                                                                          tGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCAc               >  2:5200759/1‑93 (MQ=255)

                                                                          tGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCAc               <  1:1337855/93‑1 (MQ=255)

                                                                          tGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCAc               >  2:6472707/1‑93 (MQ=255)

                                                                            cATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTa             <  2:5422466/93‑1 (MQ=255)

                                                                              ttACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGAGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAAt           >  2:3822606/1‑93 (MQ=255)

                                                                               tACCCGGAGCAGCAAAAACAGTCTCACCCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATa          <  2:1679430/93‑1 (MQ=255)

                                                                               tACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGGCCGCCGTTACCAATCACTAATa          >  1:585053/1‑93 (MQ=255)

                                                                               tACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATa          >  1:2008962/1‑93 (MQ=255)

                                                                                  ccGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACtt       <  1:992181/93‑1 (MQ=255)

                                                                                    ggAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTc     >  2:2409567/1‑93 (MQ=255)

                                                                                       gcagcaAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATc  >  1:4803286/1‑93 (MQ=255)

GCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAACAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATC  >  NC_000913/4203331‑4203510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTGCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAACAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTATT  >  NC_000913/4203329‑4203514

GTGCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGC                                                                                              >  SRR4302536.495763/1‑94 (MQ=60)

GTGCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGC                                                                                              >  SRR4302536.260807/1‑94 (MQ=60)

  GCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAA                                                                                            <  SRR4302536.6223680/94‑1 (MQ=60)

     AAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAA                                                                                         >  SRR4302536.5736565/1‑94 (MQ=60)

      AATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAAC                                                                                        >  SRR4302536.5285238/1‑94 (MQ=60)

      AATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAAC                                                                                        >  SRR4302536.6194790/1‑94 (MQ=60)

        TCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTTCCCGGAGCAGCAAAAACAG                                                                                      <  SRR4302536.434759/94‑1 (MQ=60)

        TCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAG                                                                                      >  SRR4302536.950713/1‑94 (MQ=60)

        TCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAG                                                                                      <  SRR4302536.5890986/94‑1 (MQ=60)

        GCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAG                                                                                      <  SRR4302536.6837915/94‑1 (MQ=60)

         CCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGT                                                                                     >  SRR4302536.2522987/1‑94 (MQ=60)

         CCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGT                                                                                     >  SRR4302536.6844167/1‑94 (MQ=60)

         CCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGT                                                                                     >  SRR4302536.835461/1‑94 (MQ=60)

         CCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGT                                                                                     >  SRR4302536.3114177/1‑94 (MQ=60)

         CCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGT                                                                                     <  SRR4302536.571358/94‑1 (MQ=60)

         CCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGT                                                                                     <  SRR4302536.5710783/94‑1 (MQ=60)

           AACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGTAGCAAAAACAGTCT                                                                                   <  SRR4302536.6796417/94‑1 (MQ=60)

           AACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCT                                                                                   <  SRR4302536.4508189/94‑1 (MQ=60)

           AACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCT                                                                                   <  SRR4302536.4577432/94‑1 (MQ=60)

           AACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCT                                                                                   <  SRR4302536.4040052/94‑1 (MQ=60)

           AACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCT                                                                                   >  SRR4302536.4422455/1‑94 (MQ=60)

           AACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCT                                                                                   <  SRR4302536.3482197/94‑1 (MQ=60)

           AACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCT                                                                                   <  SRR4302536.1337464/94‑1 (MQ=60)

           AACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCT                                                                                   <  SRR4302536.3608206/94‑1 (MQ=60)

            ACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTC                                                                                  >  SRR4302536.1400157/1‑94 (MQ=60)

             CAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCA                                                                                 <  SRR4302536.3007629/94‑1 (MQ=60)

               GCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAAC                                                                               <  SRR4302536.3380463/94‑1 (MQ=60)

                 GCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCA                                                                             <  SRR4302536.3761812/94‑1 (MQ=60)

                 GCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCA                                                                             <  SRR4302536.3212455/94‑1 (MQ=60)

                 GCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGAGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCA                                                                             <  SRR4302536.539049/94‑1 (MQ=60)

                  CCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAG                                                                            <  SRR4302536.1235357/94‑1 (MQ=60)

                  CCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAG                                                                            >  SRR4302536.4296881/1‑94 (MQ=60)

                    GGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCG                                                                          >  SRR4302536.6291735/1‑94 (MQ=60)

                     GGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGG                                                                         <  SRR4302536.6201268/94‑1 (MQ=60)

                     GGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGG                                                                         >  SRR4302536.1175036/1‑94 (MQ=60)

                     GGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGG                                                                         >  SRR4302536.3158755/1‑94 (MQ=60)

                       ATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCG                                                                       >  SRR4302536.2470052/1‑94 (MQ=60)

                       ATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCG                                                                       >  SRR4302536.1394415/1‑94 (MQ=60)

                       ATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCG                                                                       <  SRR4302536.1642872/94‑1 (MQ=60)

                        TATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGAGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCAGCGA                                                                      >  SRR4302536.6461002/1‑94 (MQ=60)

                         ATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCCGTGCCTGCATTACCCGGAGCCGCAAAAACAGGCTCAACCAGCGGCGAC                                                                     >  SRR4302536.1802984/1‑94 (MQ=60)

                         ATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGAC                                                                     <  SRR4302536.5666150/94‑1 (MQ=60)

                          TCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACT                                                                    >  SRR4302536.453351/1‑94 (MQ=60)

                           CGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTG                                                                   >  SRR4302536.3066163/1‑94 (MQ=60)

                           CGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTG                                                                   >  SRR4302536.1528699/1‑94 (MQ=60)

                            GGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGG                                                                  <  SRR4302536.2694462/94‑1 (MQ=60)

                              TCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGC                                                                >  SRR4302536.166924/1‑94 (MQ=60)

                                ACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCG                                                              >  SRR4302536.5852121/1‑94 (MQ=60)

                                  GCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCT                                                            >  SRR4302536.2081267/1‑94 (MQ=60)

                                   CCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTT                                                           >  SRR4302536.3166712/1‑94 (MQ=60)

                                    CAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGTGACTGAGCCGCTTT                                                          >  SRR4302536.3910574/1‑94 (MQ=60)

                                    CAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTT                                                          >  SRR4302536.4440685/1‑94 (MQ=60)

                                    CAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTT                                                          <  SRR4302536.5637746/94‑1 (MQ=60)

                                    CAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTT                                                          <  SRR4302536.512299/94‑1 (MQ=60)

                                     AATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTC                                                         >  SRR4302536.2639403/1‑94 (MQ=60)

                                       TAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCA                                                       <  SRR4302536.2888874/94‑1 (MQ=60)

                                       TAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCA                                                       <  SRR4302536.1665541/94‑1 (MQ=60)

                                       TAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCA                                                       >  SRR4302536.4898522/1‑94 (MQ=60)

                                       TAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCA                                                       <  SRR4302536.3371523/94‑1 (MQ=60)

                                       TAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCA                                                       <  SRR4302536.274516/94‑1 (MQ=60)

                                       TAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCA                                                       <  SRR4302536.31751/94‑1 (MQ=60)

                                        AGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAG                                                      >  SRR4302536.2296020/1‑94 (MQ=60)

                                         GCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGG                                                     >  SRR4302536.4837752/1‑94 (MQ=60)

                                         GCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGG                                                     <  SRR4302536.1996934/94‑1 (MQ=60)

                                         GCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGG                                                     <  SRR4302536.6550630/94‑1 (MQ=60)

                                          CAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGC                                                    >  SRR4302536.4999043/1‑94 (MQ=60)

                                          CAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTAAACCAGCGGCGACTGGGCCGCTTTCCAGGC                                                    >  SRR4302536.638829/1‑94 (MQ=60)

                                           AACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCC                                                   >  SRR4302536.4995055/1‑94 (MQ=60)

                                            ACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCA                                                  <  SRR4302536.993966/94‑1 (MQ=60)

                                            ACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCA                                                  <  SRR4302536.142545/94‑1 (MQ=60)

                                              GTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGC                                                >  SRR4302536.1229421/1‑94 (MQ=60)

                                               TTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCG                                               <  SRR4302536.6088897/94‑1 (MQ=60)

                                               CTTTGCAGCGCGGGTTCCAGATCAGTGCCTGCATTACGCGGAGCAGCAAAAACAGACTCAACCAGCGGCGACTCGGTCGCTTTTCAGGCCACCG                                               >  SRR4302536.5948409/1‑94 (MQ=55)

                                                  TGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGT                                            >  SRR4302536.57531/1‑94 (MQ=60)

                                                  TGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGT                                            >  SRR4302536.498550/1‑94 (MQ=60)

                                                  TGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGT                                            <  SRR4302536.3028321/94‑1 (MQ=60)

                                                   GCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTG                                           >  SRR4302536.1602001/1‑94 (MQ=60)

                                                    CAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGTGCCGCTTTCCAGGCCAGCGCGAGC                                          >  SRR4302536.2482350/1‑94 (MQ=60)

                                                    CAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGC                                          >  SRR4302536.92765/1‑94 (MQ=60)

                                                    CAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGACGCTTTCCAGGCCAGCGCGTGC                                          >  SRR4302536.646678/1‑94 (MQ=60)

                                                     AGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCT                                         <  SRR4302536.2011229/94‑1 (MQ=60)

                                                      GCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTC                                        <  SRR4302536.4197525/94‑1 (MQ=60)

                                                      GCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTC                                        <  SRR4302536.1700580/94‑1 (MQ=60)

                                                      GCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTC                                        <  SRR4302536.3780356/94‑1 (MQ=60)

                                                      GCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTC                                        <  SRR4302536.4197526/94‑1 (MQ=60)

                                                        GCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGC                                      <  SRR4302536.1889570/94‑1 (MQ=60)

                                                        GCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGC                                      <  SRR4302536.6526927/94‑1 (MQ=60)

                                                         CGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCG                                     >  SRR4302536.3033168/1‑94 (MQ=60)

                                                            GTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCC                                  >  SRR4302536.2601673/1‑94 (MQ=60)

                                                            GTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCC                                  <  SRR4302536.459129/94‑1 (MQ=60)

                                                            GTTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCC                                  <  SRR4302536.2111203/94‑1 (MQ=60)

                                                             TTCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCG                                 >  SRR4302536.3414941/1‑94 (MQ=60)

                                                              TCCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGTGCGTGCTCTCGCTCGC                                >  SRR4302536.5032718/1‑94 (MQ=60)

                                                               CCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCC                               >  SRR4302536.4849813/1‑94 (MQ=60)

                                                               CCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCC                               <  SRR4302536.5364020/94‑1 (MQ=60)

                                                               CCAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCC                               <  SRR4302536.6563078/94‑1 (MQ=60)

                                                                CAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCG                              >  SRR4302536.5065289/1‑94 (MQ=60)

                                                                CAGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCG                              >  SRR4302536.5479122/1‑94 (MQ=60)

                                                                 AGTGCAGTGCCTGCATTCCCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGT                             <  SRR4302536.3748845/94‑1 (MQ=60)

                                                                 AGTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGT                             >  SRR4302536.958527/1‑94 (MQ=60)

                                                                  GTGCAGTGCCTGCATTACCCGGAGCAGCAAAACCAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTT                            <  SRR4302536.4239594/94‑1 (MQ=60)

                                                                  GTGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTT                            <  SRR4302536.3029942/94‑1 (MQ=60)

                                                                   ggcatgGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTA                           <  SRR4302536.1615029/88‑1 (MQ=60)

                                                                   TGCAGTGCCTGCATTCCCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTA                           <  SRR4302536.3358636/94‑1 (MQ=60)

                                                                   TGCAGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTA                           >  SRR4302536.4432051/1‑94 (MQ=60)

                                                                      AGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCA                        >  SRR4302536.6903370/1‑94 (MQ=60)

                                                                      AGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCA                        >  SRR4302536.1677812/1‑94 (MQ=60)

                                                                      AGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCA                        >  SRR4302536.5534106/1‑94 (MQ=60)

                                                                      AGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCA                        >  SRR4302536.5951202/1‑94 (MQ=60)

                                                                      AGTGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCA                        >  SRR4302536.5894456/1‑94 (MQ=60)

                                                                        TGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAAT                      <  SRR4302536.1149900/94‑1 (MQ=60)

                                                                        TGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAAT                      <  SRR4302536.1629028/94‑1 (MQ=60)

                                                                        TGCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAAT                      <  SRR4302536.3375036/94‑1 (MQ=60)

                                                                        TCCCTGCATTCCCCGGAGCAGCAAAACCAGTCTCACCCAGCGGCGACTGGGCCGCTTTCCAGCCCAGCGCGTGCTCGCGCCCGCCGTTACCAAT                      <  SRR4302536.1228695/94‑1 (MQ=60)

                                                                         GCCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATC                     >  SRR4302536.4914566/1‑94 (MQ=60)

                                                                          CCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGTGCAGCGCGTGCTCGCGCCCGCCGCTACCAATCA                    >  SRR4302536.5473202/1‑94 (MQ=60)

                                                                          CCTGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCA                    >  SRR4302536.3867408/1‑94 (MQ=60)

                                                                           CTGCATTCCCCGGAGCAGCAAAAACAGTCTCACCCAGCGGCGCCTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCAC                   <  SRR4302536.6011282/94‑1 (MQ=60)

                                                                            TGCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACT                  <  SRR4302536.1377767/94‑1 (MQ=60)

                                                                             GCATTCCCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTA                 <  SRR4302536.2557892/94‑1 (MQ=60)

                                                                             GCATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTA                 >  SRR4302536.2753457/1‑94 (MQ=60)

                                                                             GCATTACCCAGACCAGCAAAAACAGTCTCAAGCAATGACGACCGGGCCGCTTTCCAGGCCAGCGCGTGCTCTCGCCCGCCGATACCAATactta                 >  SRR4302536.2276472/1‑89 (MQ=33)

                                                                              CATTCCCGGGAGCAGCAAAAACAGTCTCAACCGGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAA                <  SRR4302536.2762657/94‑1 (MQ=60)

                                                                               ATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAAT               >  SRR4302536.4458155/1‑94 (MQ=60)

                                                                               ATTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAAT               >  SRR4302536.186442/1‑94 (MQ=60)

                                                                               ATCACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACGGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAAT               <  SRR4302536.2690558/94‑1 (MQ=60)

                                                                                TTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGGCCGCCGTTACCAATCACTAATA              >  SRR4302536.600011/1‑94 (MQ=60)

                                                                                TTACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATA              >  SRR4302536.2069423/1‑94 (MQ=60)

                                                                                  CCCCGGAGCAGCAAAAACAGTCTCACCCAGCGGCGACTGGGCCGCTTCCCAGCCCGGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACT            <  SRR4302536.5856205/94‑1 (MQ=60)

                                                                                  ACCCGGAGCAGCAAAACCAGTCTCAACCAGCGGCGACTGGCCCGCTTTCCAGGCAAGCCCGTGCTCGCGCCCGCCGTTACCAATCACTAATACT            <  SRR4302536.3034135/94‑1 (MQ=60)

                                                                                  ACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACT            <  SRR4302536.706715/94‑1 (MQ=60)

                                                                                  ACCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACT            <  SRR4302536.5492887/94‑1 (MQ=60)

                                                                                   CCCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTT           >  SRR4302536.3000402/1‑94 (MQ=60)

                                                                                    CCGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTT          <  SRR4302536.1021442/94‑1 (MQ=60)

                                                                                     CGGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGTCGTTACCAATCACTAATACTTTC         >  SRR4302536.2802832/1‑94 (MQ=60)

                                                                                      GGAGCAGCAAAACCAGTCCAAACCAGCGGCCACTGGGCCGCTTTCCAGGCCAGGGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCA        <  SRR4302536.4610391/94‑1 (MQ=60)

                                                                                      GGAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCA        >  SRR4302536.764935/1‑94 (MQ=60)

                                                                                       GAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCAT       >  SRR4302536.6757284/1‑94 (MQ=60)

                                                                                       GAGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCAT       <  SRR4302536.5776215/94‑1 (MQ=60)

                                                                                       GAGAAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCAT       <  SRR4302536.5930993/94‑1 (MQ=60)

                                                                                        AGCAGCAAAACCAGTCACACCCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATC      <  SRR4302536.6338313/94‑1 (MQ=60)

                                                                                        AGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATC      >  SRR4302536.6514828/1‑94 (MQ=60)

                                                                                        AGCAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATC      >  SRR4302536.4947850/1‑94 (MQ=60)

                                                                                          CAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTA    <  SRR4302536.6090011/94‑1 (MQ=60)

                                                                                          CAGCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTA    <  SRR4302536.4479317/94‑1 (MQ=60)

                                                                                            GCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTATT  >  SRR4302536.3597317/1‑94 (MQ=60)

                                                                                            GCAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTATT  >  SRR4302536.4292943/1‑94 (MQ=60)

GTGCGAAATCCAACAGCGCCGGGATATCGGTCACGCCAATAGCAACGTTTTGCAGCGCGGGTTCCAGTGCAGTGCCTGCATTACCCGGAGCAACAAAAACAGTCTCAACCAGCGGCGACTGGGCCGCTTTCCAGGCCAGCGCGTGCTCGCGCCCGCCGTTACCAATCACTAATACTTTCATCTATT  >  NC_000913/4203329‑4203514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`