Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,211,571 |
A→G |
R44R (CGT→CGC) |
yjaB ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,211,571 | 0 | A | G | 97.2%
| 534.4
/ 2.6
| 176 | R44R (CGT→CGC) | yjaB | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/5); new base G (105/66); total (105/71) |
| Fisher's exact test for biased strand distribution p-value = 9.80e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 |
Only 100 of 207 total aligned reads displayed.
TCCATATGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAACGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTTC > NC_000913/4211482‑4211660
|
cATATGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGgagcgaac > 2:3741613/1‑93 (MQ=255)
tatGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTa < 2:3247492/93‑1 (MQ=255)
tatGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTa > 2:1908642/1‑93 (MQ=255)
tatGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTa > 2:795508/1‑93 (MQ=255)
tatGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAAATa > 2:1908644/1‑93 (MQ=255)
tatGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAACGAACTa < 2:1580220/93‑1 (MQ=255)
tgctgcCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGTGCTTCCGGCAGGAAGGAGCGAACTAgg < 2:3103208/93‑1 (MQ=255)
tgctgcCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAgg < 2:2526246/93‑1 (MQ=255)
tgctgcCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAACGAACTAgg > 2:4651182/1‑93 (MQ=255)
tctgcCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGt < 1:2336070/92‑1 (MQ=255)
tgcCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGtcc < 1:1508386/93‑1 (MQ=255)
cccACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGtcctc > 2:363253/1‑93 (MQ=255)
cccACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGtcctc > 1:3466644/1‑93 (MQ=255)
ccACTTAGCAACATAACTCCAACGGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGtcctcc < 2:4499568/93‑1 (MQ=255)
ccACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGtcctcc < 1:1617592/93‑1 (MQ=255)
ccACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGtcctcc > 1:2137918/1‑93 (MQ=255)
cACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCa > 1:3591334/1‑93 (MQ=255)
cACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCa < 1:1479671/93‑1 (MQ=255)
cTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGc > 2:264142/1‑93 (MQ=255)
acgcgCAACATACATCTAACCGGCTGATCCCGCTCATTAACCTCCATCCACAACGGAGCGTCGGCCAGGAAGGAGCGAATTAGGTCCTCCAGc < 2:2519986/89‑1 (MQ=255)
ttAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCt > 1:3359427/1‑93 (MQ=255)
ttAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCt < 1:4198593/93‑1 (MQ=255)
ttAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCt < 1:1660241/93‑1 (MQ=255)
ttAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCt > 1:2020594/1‑93 (MQ=255)
tAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTc < 2:4299072/93‑1 (MQ=255)
aGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCg > 1:4484411/1‑93 (MQ=255)
gCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCgg > 2:1747676/1‑93 (MQ=255)
gCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCgg > 1:1333032/1‑93 (MQ=255)
aaCATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTc < 2:4251334/93‑1 (MQ=255)
aCATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTcc > 2:1518310/1‑93 (MQ=255)
cATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCg > 1:260503/1‑93 (MQ=255)
cATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCg > 1:4264581/1‑93 (MQ=255)
aaaTCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATa < 1:586580/93‑1 (MQ=255)
aaaTCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATa > 1:1247168/1‑93 (MQ=255)
aaTCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATAc > 1:3165073/1‑93 (MQ=255)
aTCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATAct < 2:2233092/93‑1 (MQ=255)
aTCCAACCCGCTGATCCCGCTCATTAACCGCGACCCACAACGCCGCTTCCGGCAGAAAGAAACGAATTAGGTCCTCCAGCTCGGTCCGATAct < 2:1980299/93‑1 (MQ=255)
tCCAACCGGCTGATCCCGCTTATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATActc > 2:1431006/1‑93 (MQ=255)
tCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATActc > 1:3009593/1‑93 (MQ=255)
ccACCCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATActct < 2:2395033/93‑1 (MQ=255)
ccAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATActct > 1:2919267/1‑93 (MQ=255)
aaCCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTctgc > 1:1891494/1‑93 (MQ=255)
aCCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTctgct > 1:2072527/1‑93 (MQ=255)
aCCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTctgct < 1:4024904/93‑1 (MQ=255)
ggCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGCCCGATACCCTGCTGAt > 2:2200622/1‑93 (MQ=255)
cTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAg > 1:1695107/1‑93 (MQ=255)
cTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAg > 2:652865/1‑93 (MQ=255)
cTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGGCCGATACTCTGCTGATAg > 1:1177289/1‑93 (MQ=255)
tGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCGGGAAGGAGTGAACTAGGTCCTCGAGCTCGGTCAGATACTCTGATGATAGa > 2:1315529/1‑93 (MQ=255)
tGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGACCTCCAGCTCGGTCCGATACTCTGCTGATAGa > 1:3291463/1‑93 (MQ=255)
gATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGaa > 2:3417197/1‑93 (MQ=255)
gATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGaa > 2:1334174/1‑93 (MQ=255)
gATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGaa > 1:245364/1‑93 (MQ=255)
tCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGaaaa > 1:1048094/1‑93 (MQ=255)
cccGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAAt < 2:826686/93‑1 (MQ=255)
cccGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAAt < 1:3565792/93‑1 (MQ=255)
ccGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATc > 1:3857306/1‑93 (MQ=255)
ccGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATc > 1:12257/1‑93 (MQ=255)
ccGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATc < 2:4667711/93‑1 (MQ=255)
cGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCg > 2:517330/1‑93 (MQ=255)
cGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCg < 2:1171357/93‑1 (MQ=255)
cGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCg > 2:2159096/1‑93 (MQ=255)
gCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGt > 1:2488517/1‑93 (MQ=255)
cgtCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGt < 2:1893130/91‑1 (MQ=255)
cTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTg > 2:2868162/1‑93 (MQ=255)
tCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGa < 2:613059/93‑1 (MQ=255)
tCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGa > 2:1042409/1‑93 (MQ=255)
cATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAg < 2:3558999/93‑1 (MQ=255)
cATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAg < 1:3920588/93‑1 (MQ=255)
aTTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGt > 1:677879/1‑93 (MQ=255)
aTTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGt < 2:1248436/93‑1 (MQ=255)
ttAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTg > 1:2183605/1‑93 (MQ=255)
tAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTgg > 1:2517230/1‑93 (MQ=255)
aCCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCa > 2:3893749/1‑93 (MQ=255)
gcgACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCg > 2:397399/1‑93 (MQ=255)
cgACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGa < 2:1835469/93‑1 (MQ=255)
gACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGAc > 1:2562377/1‑93 (MQ=255)
cacaACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGaa < 1:779617/93‑1 (MQ=255)
acaACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAAc > 2:3313737/1‑93 (MQ=255)
acaACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAAc > 1:1580855/1‑93 (MQ=255)
caACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTTCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACg > 2:4131506/1‑93 (MQ=255)
aCGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGac < 1:3341329/93‑1 (MQ=255)
aCGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGac < 1:172502/93‑1 (MQ=255)
cTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCaaa > 1:3689746/1‑93 (MQ=255)
ttCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAAt > 2:3188478/1‑93 (MQ=255)
ttCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGGGAGTGGCATCGACAGAACGACACCAAAt > 1:3485811/1‑93 (MQ=255)
cGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGc > 1:4603404/1‑93 (MQ=255)
ggCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCa < 1:1963879/93‑1 (MQ=255)
gCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCaa < 2:588232/93‑1 (MQ=255)
gCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCaa < 2:2109122/93‑1 (MQ=255)
gCAGGAAGGAACGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCaa < 1:1068967/93‑1 (MQ=255)
gaggaaggaGCGAAATAGGTCCTCCAGCTCGGTCCGATTCTTTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAAc < 1:2448209/92‑1 (MQ=255)
cAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAAc > 1:4634800/1‑93 (MQ=255)
ggaaggagCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGa > 1:2289702/1‑93 (MQ=255)
ggaaggagCGAACTAGGTCATCCAGCTCGGTCCGACACTCTGCTGATAGAAAATCGTGAGAGGCATAGACAGAAGGACACCAAATCGACACGa > 1:710141/1‑93 (MQ=255)
gaaggagCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAg > 1:3047844/1‑93 (MQ=255)
gaaggagCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAg < 1:3246297/93‑1 (MQ=255)
aaggagCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGt < 2:4164549/93‑1 (MQ=255)
ggagCGAACTAGGTCCTCCAGCTCGGTCCGATACTTTCCTGTTAGAAAATCGTGGGGGGCTTGGACAGAACGAAACCAAATCGCAACGAGTtc > 2:269385/1‑93 (MQ=255)
ggagCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTtc > 1:1951127/1‑93 (MQ=255)
|
TCCATATGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAACGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTTC > NC_000913/4211482‑4211660
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCATCCATATGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAACGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTTCCTCC > NC_000913/4211478‑4211664
|
CGCATCCATATGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAG < SRR4302544.2630364/94‑1 (MQ=60)
CGCATCCATATGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAG > SRR4302544.122372/1‑94 (MQ=60)
CGCATCCATATGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAG < SRR4302544.3268195/94‑1 (MQ=60)
CGCATCCATATGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAG > SRR4302544.1535322/1‑94 (MQ=60)
GCATCCATATGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGC < SRR4302544.1819060/94‑1 (MQ=60)
GCATCCATATGCTGCCCACTTAGCAACAAAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGC < SRR4302544.3789799/94‑1 (MQ=60)
ATGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGG < SRR4302544.740615/94‑1 (MQ=60)
TCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTC < SRR4302544.2358212/94‑1 (MQ=60)
TGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCT < SRR4302544.1523338/94‑1 (MQ=60)
GCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTC > SRR4302544.3499711/1‑94 (MQ=60)
CCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCC > SRR4302544.2158343/1‑94 (MQ=60)
CCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCA > SRR4302544.3625820/1‑94 (MQ=60)
CCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCA < SRR4302544.1633536/94‑1 (MQ=60)
CCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCA < SRR4302544.3376674/94‑1 (MQ=60)
CACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAG < SRR4302544.1494294/94‑1 (MQ=60)
CTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCT > SRR4302544.2040204/1‑94 (MQ=60)
CTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCT > SRR4302544.3391486/1‑94 (MQ=60)
TTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTC < SRR4302544.4240426/94‑1 (MQ=60)
TTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTC < SRR4302544.1676592/94‑1 (MQ=60)
TAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCG > SRR4302544.4529468/1‑94 (MQ=60)
AGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGG > SRR4302544.1346159/1‑94 (MQ=60)
AGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGG > SRR4302544.2501390/1‑94 (MQ=60)
AGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCCCGACCCACAACGGCGCTTCCGGAAGGAAGGAGCGAACTAGGTCCTCCAGCTCGG > SRR4302544.1305021/1‑94 (MQ=60)
ACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCG > SRR4302544.4308085/1‑94 (MQ=60)
ACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCG > SRR4302544.263259/1‑94 (MQ=60)
ATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGAT > SRR4302544.4276735/1‑94 (MQ=60)
ATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGAT < SRR4302544.2935704/94‑1 (MQ=60)
ATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGAT < SRR4302544.4677093/94‑1 (MQ=60)
ATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGAT < SRR4302544.3993717/94‑1 (MQ=60)
ATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGAAGCGAACTAGGACCTCCTGCTCGGTGCGAT > SRR4302544.3202587/1‑94 (MQ=60)
TAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATA > SRR4302544.1259451/1‑94 (MQ=60)
AAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATAC > SRR4302544.3195183/1‑94 (MQ=60)
AAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATAC > SRR4302544.2964406/1‑94 (MQ=60)
AAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATAC < SRR4302544.592333/94‑1 (MQ=60)
AATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACT > SRR4302544.97184/1‑94 (MQ=60)
AATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACT < SRR4302544.2538493/94‑1 (MQ=60)
AATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACT > SRR4302544.1236957/1‑94 (MQ=60)
ATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTC > SRR4302544.3038441/1‑94 (MQ=60)
TCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCT > SRR4302544.2947336/1‑94 (MQ=60)
CCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTG > SRR4302544.3680384/1‑94 (MQ=60)
CAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGC > SRR4302544.1909765/1‑94 (MQ=60)
AACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCT > SRR4302544.2092441/1‑94 (MQ=60)
ACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTG < SRR4302544.4064994/94‑1 (MQ=60)
CCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGA < SRR4302544.638082/94‑1 (MQ=60)
CCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGA > SRR4302544.261808/1‑94 (MQ=60)
CGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGAT > SRR4302544.4051085/1‑94 (MQ=60)
CGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGAT > SRR4302544.1241802/1‑94 (MQ=60)
GGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATA > SRR4302544.3061439/1‑94 (MQ=60)
GCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAG > SRR4302544.1711831/1‑94 (MQ=60)
GCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAG < SRR4302544.1962707/94‑1 (MQ=60)
GCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGGCCGATACTCTGCTGATAG > SRR4302544.1189025/1‑94 (MQ=60)
CTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGACCTCCAGCTCGGTCCGATACTCTGCTGATAGA > SRR4302544.3322822/1‑94 (MQ=60)
TGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAA > SRR4302544.3576832/1‑94 (MQ=60)
TGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAA > SRR4302544.247929/1‑94 (MQ=60)
TGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAA > SRR4302544.247931/1‑94 (MQ=60)
ATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAA > SRR4302544.1058479/1‑94 (MQ=60)
CCCGCTCATTACCCGCGACCCACAACGGCGCTTCGGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATC < SRR4302544.3281630/94‑1 (MQ=60)
CCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATC > SRR4302544.2568653/1‑94 (MQ=60)
CCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATC < SRR4302544.3599978/94‑1 (MQ=60)
CCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATC > SRR4302544.3895596/1‑94 (MQ=60)
CCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATC > SRR4302544.3895597/1‑94 (MQ=60)
CCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATC > SRR4302544.12370/1‑94 (MQ=60)
CCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCG < SRR4302544.1981947/94‑1 (MQ=60)
CCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCG < SRR4302544.1981946/94‑1 (MQ=60)
CGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGT > SRR4302544.2512352/1‑94 (MQ=60)
CGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGT > SRR4302544.4764465/1‑94 (MQ=60)
CGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGT > SRR4302544.2351678/1‑94 (MQ=60)
GCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTG > SRR4302544.2076015/1‑94 (MQ=60)
TCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAG > SRR4302544.4179944/1‑94 (MQ=60)
TCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAG > SRR4302544.3370471/1‑94 (MQ=60)
cattaacccccgcccccaacggccccttccggAGGAAGGAACGAAATAAGTCCTCCAGGCCGGGCCGATACTCTGCTGATAGAAAATCGTGAGT < SRR4302544.3448587/62‑1 (MQ=41)
CATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGT < SRR4302544.3959528/94‑1 (MQ=60)
CATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGT > SRR4302544.684598/1‑94 (MQ=60)
CATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAACGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGT < SRR4302544.2103892/94‑1 (MQ=60)
ATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTG > SRR4302544.2204269/1‑94 (MQ=60)
TTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGGGCGAAATAGGTCCTCCAGCTCGGTCCGATACTCTGCTAATAGCAAATCGTGAGTGG > SRR4302544.2541404/1‑94 (MQ=60)
TTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGG > SRR4302544.1715901/1‑94 (MQ=60)
TTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGG > SRR4302544.2541403/1‑94 (MQ=60)
AACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCA < SRR4302544.3022733/94‑1 (MQ=60)
CGCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCG > SRR4302544.3460686/1‑94 (MQ=60)
GCGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGA > SRR4302544.2029738/1‑94 (MQ=60)
CGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGAC > SRR4302544.2586991/1‑94 (MQ=60)
CGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGAC > SRR4302544.3512981/1‑94 (MQ=60)
CGACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGAC > SRR4302544.1405533/1‑94 (MQ=60)
GACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACA > SRR4302544.1641161/1‑94 (MQ=60)
GACCCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACA > SRR4302544.4480575/1‑94 (MQ=60)
CCACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAA > SRR4302544.695142/1‑94 (MQ=60)
CACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAAC < SRR4302544.787179/94‑1 (MQ=60)
CACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAAC > SRR4302544.1596478/1‑94 (MQ=60)
ACAACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACG < SRR4302544.1612161/94‑1 (MQ=60)
ACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACA < SRR4302544.3373182/94‑1 (MQ=60)
ACGGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACA < SRR4302544.174204/94‑1 (MQ=60)
GGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGcacaccaca > SRR4302544.3171619/1‑85 (MQ=60)
GGCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACC > SRR4302544.3171618/1‑94 (MQ=60)
GCGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCA < SRR4302544.2194467/94‑1 (MQ=60)
CGCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAA < SRR4302544.4635472/94‑1 (MQ=60)
GCTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAA > SRR4302544.3726517/1‑94 (MQ=60)
CTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAAT > SRR4302544.149412/1‑94 (MQ=60)
CTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAAT < SRR4302544.1136776/94‑1 (MQ=60)
CTTCCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGGGAGTGGCATCGACAGAACGACACCAAAT > SRR4302544.3519029/1‑94 (MQ=60)
TTCCGGCAGGAAGGAACGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATC < SRR4302544.3604243/94‑1 (MQ=60)
CCGGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGC > SRR4302544.4649159/1‑94 (MQ=60)
GGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAA < SRR4302544.1982946/94‑1 (MQ=60)
GGCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAA < SRR4302544.1832959/94‑1 (MQ=60)
GCGGGAAGGAACGAACTAGGTCCTCCAGCTAGTTACGATACTCTGCTGAGAGAAAATCGTGAGTGGCATCGACAGAACGACGCCAAATCGCAAC < SRR4302544.1079590/94‑1 (MQ=60)
GCAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAAC > SRR4302544.4680732/1‑94 (MQ=60)
GCAGGAAGGAACGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAAC < SRR4302544.1079591/94‑1 (MQ=60)
GAGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACG < SRR4302544.2471561/94‑1 (MQ=60)
GAGGAAGGAGCGAAATAGGTCCTCCAGCTCGGTCCGATTCTTTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACG < SRR4302544.2471562/94‑1 (MQ=60)
AGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGA > SRR4302544.2311284/1‑94 (MQ=60)
AGGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGA > SRR4302544.2251208/1‑94 (MQ=60)
AGGAAGGAGCGAACTAGGTCATCCAGCTCGGTCCGACACTCTGCTGATAGAAAATCGTGAGAGGCATAGACAGAAGGACACCAAATCGACACGA > SRR4302544.717184/1‑94 (MQ=60)
GGAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAG > SRR4302544.3076975/1‑94 (MQ=60)
GGAAGGAGCGAACTAGGTCCTCCAGCTCGGGCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAG < SRR4302544.1693056/94‑1 (MQ=60)
GAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATCCTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGT < SRR4302544.3946661/94‑1 (MQ=60)
GAAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGT < SRR4302544.3277372/94‑1 (MQ=60)
AAGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTT > SRR4302544.1556849/1‑94 (MQ=60)
AGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTTC > SRR4302544.1970044/1‑94 (MQ=60)
AGGAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAAAAAATAGTAAGTGGCATCGACAGAACGACACacaatacacacgcgctc > SRR4302544.1970043/1‑77 (MQ=60)
GAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTTCCT > SRR4302544.3175599/1‑94 (MQ=60)
GAGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTTCCT < SRR4302544.2935786/94‑1 (MQ=60)
AGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTTCCTC < SRR4302544.2641333/94‑1 (MQ=60)
AGCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTCATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTTCCTC < SRR4302544.2526792/94‑1 (MQ=60)
GCGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTTCCTCC < SRR4302544.4096544/94‑1 (MQ=60)
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CGCATCCATATGCTGCCCACTTAGCAACATAAATCCAACCGGCTGATCCCGCTCATTAACCGCGACCCACAACGGCGCTTCCGGCAGGAAGGAACGAACTAGGTCCTCCAGCTCGGTCCGATACTCTGCTGATAGAAAATCGTGAGTGGCATCGACAGAACGACACCAAATCGCAACGAGTTCCTCC > NC_000913/4211478‑4211664
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
