Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1475 |
266.7 |
13469680 |
98.2% |
13227225 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,722,918 |
T→A |
N247Y (AAC→TAC) |
b1647 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,722,918 | 0 | T | A | 99.5%
| 762.7
/ NA
| 210 | N247Y (AAC→TAC) | b1647 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); major base A (96/112); minor base C (1/0); total (98/112) |
| Fisher's exact test for biased strand distribution p-value = 4.64e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 216 total aligned reads displayed.
TCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACA > NC_000913/1722830‑1723007
|
tCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAacc > 2:4014348/1‑93 (MQ=255)
cTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAacca > 2:1147180/1‑93 (MQ=255)
tGCTTCGACAGCTGCCCGTTCGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAaccac > 1:6540757/1‑93 (MQ=255)
gCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTCAaccacc > 1:1640326/1‑93 (MQ=255)
gCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAaccacc > 1:1570523/1‑93 (MQ=255)
cTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCt < 1:19596/93‑1 (MQ=255)
cTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCt < 2:3842309/93‑1 (MQ=255)
ttCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAATCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTg > 1:4700887/1‑93 (MQ=255)
ttCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTg < 1:694483/93‑1 (MQ=255)
ttCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTg < 2:3634686/93‑1 (MQ=255)
cGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGtt < 2:1533364/93‑1 (MQ=255)
aCAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCa < 1:595176/93‑1 (MQ=255)
cAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCaa > 1:1230179/1‑93 (MQ=255)
cAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCaa < 1:3185563/93‑1 (MQ=255)
aGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGCTCCAt > 1:324963/1‑93 (MQ=255)
gCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATc < 1:2875337/93‑1 (MQ=255)
tGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGa > 2:5635330/1‑93 (MQ=255)
tGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGa < 2:1065716/93‑1 (MQ=255)
gCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAg > 2:3393213/1‑93 (MQ=255)
ccGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGcc < 2:1580172/93‑1 (MQ=255)
ccGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGcc > 2:5501740/1‑93 (MQ=255)
cGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGccc > 2:4258424/1‑93 (MQ=255)
gTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCcg < 1:3126830/93‑1 (MQ=255)
gTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCcg > 2:5271890/1‑93 (MQ=255)
tACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCcgc < 1:5665119/93‑1 (MQ=255)
gcgcTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGtt < 1:910055/93‑1 (MQ=255)
cgcTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGttt < 1:5995580/93‑1 (MQ=255)
cgcTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGttt < 1:6307341/93‑1 (MQ=255)
gcTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTa > 1:6532362/1‑93 (MQ=255)
cTCAATGTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTaa < 1:2791160/93‑1 (MQ=255)
tCAATGTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTACAATCGAGCCCGCGTTTAAc < 1:5154682/93‑1 (MQ=255)
cAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAct > 1:5961215/1‑93 (MQ=255)
aTTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcc < 1:1774902/93‑1 (MQ=255)
aTTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcc < 2:3070425/93‑1 (MQ=255)
aTTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcc < 1:21283/93‑1 (MQ=255)
ttttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcct < 2:2543429/93‑1 (MQ=255)
ttttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcct < 2:5892188/93‑1 (MQ=255)
ttttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcct < 1:106297/93‑1 (MQ=255)
ttttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcct > 2:3506588/1‑93 (MQ=255)
ttttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcct < 2:371890/93‑1 (MQ=255)
ttttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCCCGTTTAActcct > 2:868442/1‑93 (MQ=255)
tttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcctc < 2:1038436/93‑1 (MQ=255)
tttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcctc > 2:5409303/1‑93 (MQ=255)
ttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATCCCCAGGCGTAACCCACCTGTTCAATCGAGCCCGCGTTTAACTCctct < 2:2174931/93‑1 (MQ=255)
aCCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGc > 2:6285908/1‑93 (MQ=255)
ccTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTCAACCACCTGTTCAATCGAGCCCGCGTTTAGCTCCTCTGcc > 2:1757100/1‑93 (MQ=255)
cTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGcca > 2:6121333/1‑93 (MQ=255)
cTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGcca < 2:4712753/93‑1 (MQ=255)
tGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGccac > 2:1969632/1‑93 (MQ=255)
aaCCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGccacca < 2:1218936/93‑1 (MQ=255)
ccGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACcaca < 2:3266766/93‑1 (MQ=255)
ccGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACcaca < 2:1840722/93‑1 (MQ=255)
gATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCCCAGc > 2:2314966/1‑93 (MQ=255)
gATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGc > 1:4654660/1‑93 (MQ=255)
gATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGc < 2:1442965/93‑1 (MQ=255)
aTAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGcc > 2:4161853/1‑93 (MQ=255)
aTAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGcc < 1:5350227/93‑1 (MQ=255)
aaTTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAg < 1:1647167/93‑1 (MQ=255)
aaTTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAg < 1:2079477/93‑1 (MQ=255)
aTTGGCAGCGGCTGCGATGGTAAACGTAATCCCCAGGCGTAAACCCCCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGt < 1:3360889/93‑1 (MQ=255)
aTTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGt < 2:6706767/93‑1 (MQ=255)
ttGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGtt > 2:213427/1‑93 (MQ=255)
ttGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGtt < 1:5509388/93‑1 (MQ=255)
ggCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtca < 1:6405063/93‑1 (MQ=255)
ggCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtca < 1:4170047/93‑1 (MQ=255)
cAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtcatc < 2:4416844/93‑1 (MQ=255)
aGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtcatca > 2:4558686/1‑93 (MQ=255)
aGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtcatca < 2:2547708/93‑1 (MQ=255)
cGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACg < 1:3915438/93‑1 (MQ=255)
cGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACg > 1:3573355/1‑93 (MQ=255)
ggCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGc < 2:237953/93‑1 (MQ=255)
gCTGCGATGTTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCa < 1:4568435/93‑1 (MQ=255)
gCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCa < 2:2641950/93‑1 (MQ=255)
gCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCa > 1:4755723/1‑93 (MQ=255)
tGCGATGGTAAACGTAATCCCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGc < 2:1712548/93‑1 (MQ=255)
tGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGc < 1:4010242/93‑1 (MQ=255)
gCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCg > 2:4504846/1‑93 (MQ=255)
gATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGc > 1:3712649/1‑93 (MQ=255)
aTGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCt < 2:2843148/93‑1 (MQ=255)
tGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTg < 1:3042021/93‑1 (MQ=255)
tGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTg < 1:1986656/93‑1 (MQ=255)
tGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTg > 2:6397895/1‑93 (MQ=255)
cGTAATGCCCAGGCGTAAACCCCCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAaataa < 1:2552649/93‑1 (MQ=255)
ctAATACCCAGGCTTAAACCACCTGTTCAATCGAGCCCGCGTTTACCTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAaataat < 1:2811964/92‑1 (MQ=255)
aaTACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatca < 2:5954846/93‑1 (MQ=255)
aaTACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatca < 1:5807122/93‑1 (MQ=255)
aTACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatcat > 2:2707316/1‑93 (MQ=255)
aTACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatcat < 1:6190709/93‑1 (MQ=255)
tcccAGGCGTAACCCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAAtcatca < 2:6432015/92‑1 (MQ=255)
aCCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAAtcatca > 1:4231808/1‑93 (MQ=255)
cccAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATcatcat < 1:1660908/93‑1 (MQ=255)
ccAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTACCTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCAtt < 1:1540451/93‑1 (MQ=255)
cAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTa > 1:4600717/1‑93 (MQ=255)
cAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTa > 1:4944973/1‑93 (MQ=255)
aGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaa > 1:2308222/1‑93 (MQ=255)
ggCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaaa < 1:2802446/93‑1 (MQ=255)
ggCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaaa > 2:3425959/1‑93 (MQ=255)
ggCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaaa > 1:1948233/1‑93 (MQ=255)
gCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAAc > 2:2773181/1‑93 (MQ=255)
gCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAAc > 1:877575/1‑93 (MQ=255)
|
TCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACA > NC_000913/1722830‑1723007
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGAC > NC_000913/1722825‑1723010
|
GTGTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTA < SRR4302536.4687246/94‑1 (MQ=60)
TGTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAA > SRR4302536.2017813/1‑94 (MQ=60)
TGTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAA < SRR4302536.4602830/94‑1 (MQ=60)
TCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCA < SRR4302536.812251/94‑1 (MQ=60)
CTGCTTCGACAGCTGCCCGTTCGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCAC > SRR4302536.6735555/1‑94 (MQ=60)
TGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTCAA‑CCACC > SRR4302536.1688076/1‑94 (MQ=60)
TGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACC > SRR4302536.1616586/1‑94 (MQ=60)
GCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCT > SRR4302536.1954430/1‑94 (MQ=60)
GCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCCGCTGCGATGGTAAACGTAATACCCAGGCGGAAA‑CCACCT > SRR4302536.2893606/1‑94 (MQ=60)
CTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAATCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTG > SRR4302536.4842242/1‑94 (MQ=60)
CTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTG > SRR4302536.3297618/1‑94 (MQ=60)
CTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTG < SRR4302536.20146/94‑1 (MQ=60)
CTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTG < SRR4302536.4125773/94‑1 (MQ=60)
TTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGT < SRR4302536.714772/94‑1 (MQ=60)
CGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACGGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTC < SRR4302536.1373235/94‑1 (MQ=60)
GACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCA < SRR4302536.2882645/94‑1 (MQ=60)
GACAGCTGCCCGTACGCGCTCAATTTTACATGAACCGATAATTGGCAGCGGCTGCGATGGGCAACATAATATCCAGGCGTACA‑CCACCTGTTCA > SRR4302536.4061338/1‑94 (MQ=60)
ACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAA > SRR4302536.1267120/1‑94 (MQ=60)
ACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAA < SRR4302536.611578/94‑1 (MQ=60)
CAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAAT < SRR4302536.3278958/94‑1 (MQ=60)
CAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGCTCCAT > SRR4302536.333582/1‑94 (MQ=60)
AGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATC < SRR4302536.4836465/94‑1 (MQ=60)
GCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCG < SRR4302536.2960228/94‑1 (MQ=60)
CTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGA < SRR4302536.6410635/94‑1 (MQ=60)
CCCGTACGCGCTCAATTTTACCTGAACCGATAATTGTCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCC < SRR4302536.6140427/94‑1 (MQ=60)
CGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCG < SRR4302536.6853910/94‑1 (MQ=60)
CGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCG > SRR4302536.2296798/1‑94 (MQ=60)
CGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCG > SRR4302536.933426/1‑94 (MQ=60)
GTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGC < SRR4302536.3218215/94‑1 (MQ=60)
GTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACACAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGC > SRR4302536.3468837/1‑94 (MQ=60)
TACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCG < SRR4302536.5833494/94‑1 (MQ=60)
ACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGTCGTAAA‑CCACCTGTTCAATGGAGCCCGCGT > SRR4302536.4579617/1‑94 (MQ=60)
CGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTT < SRR4302536.6510714/94‑1 (MQ=60)
GCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTT < SRR4302536.936876/94‑1 (MQ=60)
CGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTA < SRR4302536.6495219/94‑1 (MQ=60)
CGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTA < SRR4302536.6174310/94‑1 (MQ=60)
CGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTA > SRR4302536.6726946/1‑94 (MQ=60)
CTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCG‑TAA‑CCACCTGTTCAATCGAGCCCGCGGTTAACT > SRR4302536.6311543/1‑94 (MQ=60)
CTCAATGTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAAC < SRR4302536.2874007/94‑1 (MQ=60)
TCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACT > SRR4302536.6138884/1‑94 (MQ=60)
TCAATGTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTACAATCGAGCCCGCGTTTAACT < SRR4302536.5308474/94‑1 (MQ=60)
CAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTC > SRR4302536.5572392/1‑94 (MQ=60)
AATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCC > SRR4302536.1701900/1‑94 (MQ=60)
AATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCC > SRR4302536.483737/1‑94 (MQ=60)
ATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCT > SRR4302536.6132529/1‑94 (MQ=60)
ATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCT < SRR4302536.21880/94‑1 (MQ=60)
ATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCT < SRR4302536.1828585/94‑1 (MQ=60)
TTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTC < SRR4302536.109134/94‑1 (MQ=60)
TTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTC < SRR4302536.6036781/94‑1 (MQ=60)
ACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCC < SRR4302536.4308480/94‑1 (MQ=60)
CCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCA > SRR4302536.3190797/1‑94 (MQ=60)
TGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACC > SRR4302536.1793693/1‑94 (MQ=60)
CCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCAAGCCCGCGTTTAACTCCTCTGCCACCACAC > SRR4302536.5066513/1‑94 (MQ=60)
CGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGC > SRR4302536.4794602/1‑94 (MQ=60)
ATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCA < SRR4302536.5509949/94‑1 (MQ=60)
TAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAG < SRR4302536.3767793/94‑1 (MQ=60)
TAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAG < SRR4302536.2186758/94‑1 (MQ=60)
AATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGT < SRR4302536.2142091/94‑1 (MQ=60)
AATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGT < SRR4302536.1695064/94‑1 (MQ=60)
ATTGGCAGCGGCTGCGATGGTAAACGTAATCCCCAGGCGTAAA‑CCCCCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTT < SRR4302536.3460672/94‑1 (MQ=60)
ATTGGCAGCCGCTGCGATGGTAAACGTAATGCCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTT < SRR4302536.4568829/94‑1 (MQ=60)
TTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTC < SRR4302536.5673729/94‑1 (MQ=60)
GGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCAT > SRR4302536.5705679/1‑94 (MQ=60)
GGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCAT < SRR4302536.6596266/94‑1 (MQ=60)
GGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCAT < SRR4302536.4293932/94‑1 (MQ=60)
AGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCAC < SRR4302536.997488/94‑1 (MQ=60)
AGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCAC < SRR4302536.1751462/94‑1 (MQ=60)
GCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACG > SRR4302536.3680191/1‑94 (MQ=60)
CGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGC < SRR4302536.4031835/94‑1 (MQ=60)
CGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGC > SRR4302536.3062000/1‑94 (MQ=60)
GGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCA < SRR4302536.4775107/94‑1 (MQ=60)
GGCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCA > SRR4302536.4898906/1‑94 (MQ=60)
GCTGCGATGTTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAG < SRR4302536.4705526/94‑1 (MQ=60)
GCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAG > SRR4302536.885424/1‑94 (MQ=60)
GCTGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAG > SRR4302536.3688179/1‑94 (MQ=60)
TGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCG > SRR4302536.2817018/1‑94 (MQ=60)
TGCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCG < SRR4302536.4129237/94‑1 (MQ=60)
TGCGATGGTAAACGTAATACCCAGGCGGAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCG > SRR4302536.4725854/1‑94 (MQ=60)
TCGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGG < SRR4302536.3267569/94‑1 (MQ=60)
CGATGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGC > SRR4302536.3823639/1‑94 (MQ=60)
TGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGG < SRR4302536.2046398/94‑1 (MQ=60)
TGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGG < SRR4302536.6281511/94‑1 (MQ=60)
TGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGG > SRR4302536.3366640/1‑94 (MQ=60)
TGGTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGG < SRR4302536.3131448/94‑1 (MQ=60)
GTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGCA > SRR4302536.2998317/1‑94 (MQ=60)
GTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAA > SRR4302536.4142566/1‑94 (MQ=60)
GTAAACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAA < SRR4302536.5115044/94‑1 (MQ=60)
ACGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCAGCACGCAGCGGCTGGAAATAA < SRR4302536.6734248/94‑1 (MQ=60)
CGTAATGCCCAGGCGTAAA‑CCCCCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAAT < SRR4302536.2629502/94‑1 (MQ=60)
CGTAATACCCAGGCTTAAA‑CCGCCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAAT < SRR4302536.5595348/94‑1 (MQ=60)
CGTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAAT < SRR4302536.2013010/94‑1 (MQ=60)
GTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGCAATAATC > SRR4302536.2896622/1‑94 (MQ=60)
GTAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATC > SRR4302536.5313751/1‑94 (MQ=60)
CTAATACCCAGGCTTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTACCTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATC < SRR4302536.2895304/94‑1 (MQ=60)
TAATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCA < SRR4302536.2037693/94‑1 (MQ=60)
AATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCAT < SRR4302536.5980075/94‑1 (MQ=60)
ATCCCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATC < SRR4302536.1614558/94‑1 (MQ=60)
ATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATC < SRR4302536.5845219/94‑1 (MQ=60)
ATACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATC < SRR4302536.6375114/94‑1 (MQ=60)
TACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCA > SRR4302536.4357734/1‑94 (MQ=60)
ACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCAT < SRR4302536.118023/94‑1 (MQ=60)
ACCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCAT > SRR4302536.4784674/1‑94 (MQ=60)
CCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATT > SRR4302536.2291210/1‑94 (MQ=60)
CCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATT < SRR4302536.1709123/94‑1 (MQ=60)
CCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATA > SRR4302536.3929846/1‑94 (MQ=60)
CCCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGCTCATCACGCAGCGGCTGGAAATAATCATCACT > SRR4302536.2405538/1‑94 (MQ=60)
CCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTACCTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTA < SRR4302536.1585745/94‑1 (MQ=60)
CCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTA > SRR4302536.5093570/1‑94 (MQ=60)
CCAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTA > SRR4302536.4738862/1‑94 (MQ=60)
CAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGGAATAATCATCATTAA > SRR4302536.1693185/1‑94 (MQ=60)
CAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAA > SRR4302536.6633145/1‑94 (MQ=60)
CAGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAA > SRR4302536.2378271/1‑94 (MQ=60)
AGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAA > SRR4302536.2068948/1‑94 (MQ=60)
AGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAA > SRR4302536.1641339/1‑94 (MQ=60)
AGGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAA > SRR4302536.2006818/1‑94 (MQ=60)
GGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAAC > SRR4302536.903425/1‑94 (MQ=60)
GGCGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAAC < SRR4302536.2885557/94‑1 (MQ=60)
CGTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAG > SRR4302536.6674122/1‑94 (MQ=60)
GTAAA‑CCCCCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGA < SRR4302536.3531301/94‑1 (MQ=60)
GTAAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGA < SRR4302536.643136/94‑1 (MQ=60)
TAACCCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGAC < SRR4302536.6229624/94‑1 (MQ=60)
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GTGTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAA‑CCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGAC > NC_000913/1722825‑1723010
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
