Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,749,762 A→G L698P (CTG→CCG)  b1673 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,749,7620AG100.0% 813.1 / NA 246L698P (CTG→CCG) b1673hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (144/102);  total (144/102)

Only 100 of 268 total aligned reads displayed.

AACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCC  >  NC_000913/1749672‑1749851
                                                                                          |                                                                                         
aaCCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGt                                                                                         <  2:3669081/93‑1 (MQ=255)
aaCCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGt                                                                                         >  2:3375183/1‑93 (MQ=255)
 aCCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTa                                                                                        >  1:6322994/1‑93 (MQ=255)
 aCCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTa                                                                                        >  1:91096/1‑93 (MQ=255)
    aTTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGAt                                                                                     <  1:1526295/93‑1 (MQ=255)
     ttGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGAtt                                                                                    >  1:5985652/1‑93 (MQ=255)
        ccGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATtgtg                                                                                 <  2:3743543/93‑1 (MQ=255)
        ccGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATtgtg                                                                                 <  2:4391232/93‑1 (MQ=255)
        ccGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATtgtg                                                                                 <  2:3174878/93‑1 (MQ=255)
        ccGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATtgtg                                                                                 >  1:1937058/1‑93 (MQ=255)
         cGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATtgtgt                                                                                <  2:5513697/93‑1 (MQ=255)
           cTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGtgc                                                                              >  1:3954094/1‑93 (MQ=255)
            ttCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGtgcc                                                                             >  2:4724232/1‑92 (MQ=255)
               gCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTgccgcc                                                                          >  1:2621655/1‑93 (MQ=255)
                ccTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCa                                                                         >  2:4811263/1‑93 (MQ=255)
                 cTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAg                                                                        >  1:4004112/1‑93 (MQ=255)
                  tCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGCAGATTGTGTGCCGCCAGa                                                                       >  2:1793185/1‑93 (MQ=255)
                    gTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATc                                                                     >  2:3441082/1‑93 (MQ=255)
                       aaCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATcggc                                                                  <  1:6237947/93‑1 (MQ=255)
                       aaCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATcggc                                                                  <  2:2751419/93‑1 (MQ=255)
                         cTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATcggcgg                                                                >  1:6396184/1‑93 (MQ=255)
                          ttCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCggcggc                                                               <  2:1305901/93‑1 (MQ=255)
                          ttCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCggcggc                                                               >  1:1428092/1‑93 (MQ=255)
                             gCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAat                                                            >  1:5361464/1‑93 (MQ=255)
                               tGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCCatat                                                          >  2:4583275/1‑93 (MQ=255)
                               tGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAatat                                                          >  2:2282650/1‑93 (MQ=255)
                               tGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAatat                                                          >  2:1648713/1‑93 (MQ=255)
                               tGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAatat                                                          >  2:1190940/1‑93 (MQ=255)
                                gACTTTCGCTAACGGCAATTCATCCTGATGGTTTATCTTACCCATTCCTTACGCAGGCGGTAGCTTGTGTGCCGCCAGATCGGCGGCAATATc                                                         >  1:2111658/1‑93 (MQ=255)
                                 aCTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCt                                                        >  1:4220487/1‑93 (MQ=255)
                                 aCTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCt                                                        <  2:3367646/93‑1 (MQ=255)
                                  cTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCtt                                                       <  1:5775581/93‑1 (MQ=255)
                                   tttCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTc                                                      <  2:305497/93‑1 (MQ=255)
                                     tCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCa                                                    <  1:1383901/93‑1 (MQ=255)
                                        cTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGcc                                                 >  2:860749/1‑93 (MQ=255)
                                         tAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGccc                                                >  1:4406051/1‑93 (MQ=255)
                                          aaCGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGcccc                                               >  2:3931821/1‑93 (MQ=255)
                                          aaCGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGcccc                                               >  1:1727243/1‑93 (MQ=255)
                                              gCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGAc                                           >  1:2216721/1‑93 (MQ=255)
                                                aaTTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGc                                         >  1:1576318/1‑93 (MQ=255)
                                                aaTTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGc                                         >  2:2684121/1‑93 (MQ=255)
                                                  ttCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTg                                       >  1:5513806/1‑93 (MQ=255)
                                                     aTCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCaa                                    >  2:1347474/1‑93 (MQ=255)
                                                      tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCTGCAATATCTTCCAGCCCCAGACGCTGCAAt                                   >  1:5233292/1‑93 (MQ=255)
                                                      tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                   >  1:733140/1‑93 (MQ=255)
                                                      tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                   >  2:6451526/1‑93 (MQ=255)
                                                      tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                   >  1:3742626/1‑93 (MQ=255)
                                                      tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                   >  2:2862695/1‑93 (MQ=255)
                                                       ccTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGAAATATCTTCCAGCCCCAGACGCTGCAATg                                  >  2:5609341/1‑93 (MQ=255)
                                                        cTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGt                                 <  1:5403249/93‑1 (MQ=255)
                                                         tGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGtt                                >  1:2873400/1‑93 (MQ=255)
                                                         tGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGtt                                >  1:4962314/1‑93 (MQ=255)
                                                         tGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGtt                                <  2:4523379/93‑1 (MQ=255)
                                                         tGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGtt                                >  1:3268401/1‑93 (MQ=255)
                                                         tGATGGTTCATCTTACCCATGCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGtt                                <  1:4046508/93‑1 (MQ=255)
                                                          gATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGttt                               >  1:529514/1‑93 (MQ=255)
                                                          gATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGttt                               >  1:455418/1‑93 (MQ=255)
                                                          gATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGttt                               <  2:2429497/93‑1 (MQ=255)
                                                           aTGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCGATGTTTc                              >  2:5864865/1‑93 (MQ=255)
                                                             ggTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTcgc                            >  1:1589257/1‑93 (MQ=255)
                                                              gTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTcgcg                           <  2:603266/93‑1 (MQ=255)
                                                               ttCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCgg                          >  1:1089157/1‑93 (MQ=255)
                                                                tCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCggg                         <  1:3579150/93‑1 (MQ=255)
                                                                 cATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGt                        <  1:4857152/93‑1 (MQ=255)
                                                                 cATCTTACCCATTCCGTACGCAGGCGGTAGATTGTGTCCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGt                        <  1:1047553/93‑1 (MQ=255)
                                                                    cTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTgg                     >  2:1883043/1‑93 (MQ=255)
                                                                    cTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTgg                     >  2:5152812/1‑93 (MQ=255)
                                                                     ttACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGa                    >  1:2429150/1‑93 (MQ=255)
                                                                     ttACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGa                    <  2:4973622/93‑1 (MQ=255)
                                                                      tACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGaa                   >  2:423808/1‑92 (MQ=255)
                                                                      tACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGAc                   <  2:5648329/93‑1 (MQ=255)
                                                                      tACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGAc                   >  1:3052389/1‑93 (MQ=255)
                                                                      tACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGAc                   <  2:3295815/93‑1 (MQ=255)
                                                                       aCCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACa                  <  1:1887926/93‑1 (MQ=255)
                                                                       aCCCATTCCTTACGCAGGCGGTAGATTGTATGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACa                  >  2:3808397/1‑93 (MQ=255)
                                                                        cccATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACaa                 >  1:5582665/1‑93 (MQ=255)
                                                                         ccATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAc                <  1:6097936/93‑1 (MQ=255)
                                                                         ccATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAc                >  2:1583350/1‑93 (MQ=255)
                                                                           aTTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCTCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCa              >  2:2971046/1‑93 (MQ=255)
                                                                           aTTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAACa              >  1:2008868/1‑93 (MQ=255)
                                                                            ttCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCaa             <  2:3850916/93‑1 (MQ=255)
                                                                            ttCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCaa             >  1:1323565/1‑93 (MQ=255)
                                                                             tCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAg            >  1:4302740/1‑93 (MQ=255)
                                                                              ccTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGc           <  2:5765615/93‑1 (MQ=255)
                                                                              ccTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGc           <  2:5223716/93‑1 (MQ=255)
                                                                               cTTACGCAGGCGGTAGATTGTGTTCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCt          <  2:4448552/93‑1 (MQ=255)
                                                                               cTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTGCAGCCCCAGAAGCTGCAATGTTTCGCGGGTTGGACAACCAAGCt          >  2:2250511/1‑93 (MQ=255)
                                                                               cTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCt          <  1:6485099/93‑1 (MQ=255)
                                                                                 tACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCtgt        <  1:3174505/93‑1 (MQ=255)
                                                                                 tACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCtgt        <  1:474174/93‑1 (MQ=255)
                                                                                 tACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCtgt        <  2:198428/93‑1 (MQ=255)
                                                                                  aCGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCtgtg       >  1:662435/1‑93 (MQ=255)
                                                                                    gcaggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCCGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTggg     >  1:483270/1‑93 (MQ=255)
                                                                                    gcaggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTggg     <  1:450887/93‑1 (MQ=255)
                                                                                    gcaggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTggg     <  1:2152843/93‑1 (MQ=255)
                                                                                     caggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGt    <  2:647416/93‑1 (MQ=255)
                                                                                      aggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTc   >  2:675560/1‑93 (MQ=255)
                                                                                      aggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGGTGGACAACCAAGCTGTGGGTc   >  1:2252388/1‑93 (MQ=255)
                                                                                       ggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGCCGCTGCAATGTTTCGCGGGGTGGACAACCAAGCTGTGGGTcc  >  2:2052033/1‑93 (MQ=255)
                                                                                       ggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTcc  >  1:30005/1‑93 (MQ=255)
                                                                                          |                                                                                         
AACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCC  >  NC_000913/1749672‑1749851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGCAACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGC  >  NC_000913/1749669‑1749855
                                                                                             |                                                                                             
TGCAACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCG                                                                                               <  SRR4302536.104318/94‑1 (MQ=60)
TGCAACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCG                                                                                               <  SRR4302536.3630939/94‑1 (MQ=60)
TGCAACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCG                                                                                               <  SRR4302536.3611366/94‑1 (MQ=60)
TGCAACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCG                                                                                               >  SRR4302536.2861496/1‑94 (MQ=60)
TGCAACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCG                                                                                               <  SRR4302536.125854/94‑1 (MQ=60)
 GCAACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGG                                                                                              >  SRR4302536.1000943/1‑94 (MQ=60)
  CAACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGT                                                                                             >  SRR4302536.4036054/1‑94 (MQ=60)
   AACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTA                                                                                            >  SRR4302536.93523/1‑94 (MQ=60)
   AACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTA                                                                                            <  SRR4302536.226286/94‑1 (MQ=60)
   AACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTA                                                                                            <  SRR4302536.2268870/94‑1 (MQ=60)
   AACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTA                                                                                            >  SRR4302536.6511322/1‑94 (MQ=60)
   AACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTA                                                                                            >  SRR4302536.1111902/1‑94 (MQ=60)
   AACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTA                                                                                            >  SRR4302536.3828177/1‑94 (MQ=60)
    ACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAG                                                                                           >  SRR4302536.846444/1‑94 (MQ=60)
    ACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAG                                                                                           >  SRR4302536.3048492/1‑94 (MQ=60)
       ATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATT                                                                                        <  SRR4302536.2096537/94‑1 (MQ=60)
       ATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATT                                                                                        >  SRR4302536.6164120/1‑94 (MQ=60)
       ATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATT                                                                                        <  SRR4302536.1571210/94‑1 (MQ=60)
        TTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTG                                                                                       <  SRR4302536.1896406/94‑1 (MQ=60)
         TGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGT                                                                                      >  SRR4302536.4703370/1‑94 (MQ=60)
         TGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGT                                                                                      >  SRR4302536.3158356/1‑94 (MQ=60)
          GCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTG                                                                                     >  SRR4302536.1995319/1‑94 (MQ=60)
           CCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTGCCCATTCCTTACGCAGGCGGTAGATTGTGT                                                                                    <  SRR4302536.4147093/94‑1 (MQ=60)
           CCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGT                                                                                    <  SRR4302536.5091416/94‑1 (MQ=60)
             GCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGC                                                                                  >  SRR4302536.4071511/1‑94 (MQ=60)
              CTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCC                                                                                 >  SRR4302536.5466366/1‑94 (MQ=60)
              CTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACACAGGCGGTAGATTGTGTGCC                                                                                 <  SRR4302536.6707627/94‑1 (MQ=60)
               TTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCG                                                                                <  SRR4302536.3227945/94‑1 (MQ=60)
                 CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCC                                                                              >  SRR4302536.2700293/1‑94 (MQ=60)
                 CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCC                                                                              >  SRR4302536.6557577/1‑94 (MQ=60)
                 CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCC                                                                              >  SRR4302536.6047010/1‑94 (MQ=60)
                  GCCTCGTCACCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCA                                                                             >  SRR4302536.6723787/1‑94 (MQ=60)
                   CCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAG                                                                            >  SRR4302536.4122934/1‑94 (MQ=60)
                     TCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGAT                                                                          <  SRR4302536.1713157/94‑1 (MQ=60)
                      CGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATC                                                                         <  SRR4302536.3856217/94‑1 (MQ=60)
                      CGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATC                                                                         >  SRR4302536.4233179/1‑94 (MQ=60)
                      CGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATC                                                                         >  SRR4302536.4622445/1‑94 (MQ=60)
                         CAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGC                                                                      >  SRR4302536.4660876/1‑94 (MQ=60)
                          AACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCATGCGGTCGATTGTGTGCctcccgatccgcc                                                                     >  SRR4302536.2059924/1‑81 (MQ=60)
                          AACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCG                                                                     <  SRR4302536.1179002/94‑1 (MQ=60)
                          AACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCG                                                                     <  SRR4302536.1596696/94‑1 (MQ=60)
                          AACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCG                                                                     >  SRR4302536.5393871/1‑94 (MQ=60)
                          AACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCG                                                                     <  SRR4302536.6423779/94‑1 (MQ=60)
                           ACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGG                                                                    >  SRR4302536.6587059/1‑94 (MQ=60)
                            CTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGC                                                                   <  SRR4302536.3600694/94‑1 (MQ=60)
                            CTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGC                                                                   >  SRR4302536.1470511/1‑94 (MQ=60)
                               CGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAAT                                                                >  SRR4302536.5521425/1‑94 (MQ=60)
                               CGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAAT                                                                <  SRR4302536.3351650/94‑1 (MQ=60)
                               CGCGGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAAT                                                                <  SRR4302536.1634284/94‑1 (MQ=60)
                                GCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATA                                                               <  SRR4302536.5336607/94‑1 (MQ=60)
                                GCTGACTTTCGCTAACGGCAATTCATCCTGATAGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATA                                                               >  SRR4302536.1701478/1‑94 (MQ=60)
                                  TGACTTTCGCTAACGGCAATTCATCCTGATGGTTTATCTTACCCATTCCTTACGCAGGCGGTAGCTTGTGTGCCGCCAGATCGGCGGCAATATC                                                             >  SRR4302536.2175121/1‑94 (MQ=60)
                                  TGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATT                                                             >  SRR4302536.1423347/1‑94 (MQ=60)
                                  TGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATC                                                             >  SRR4302536.513234/1‑94 (MQ=60)
                                  TGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTGACCCATTCCTTACGCAGGCGGAAGATTGTGTGCCGCCAGATCGGCGGCAATATC                                                             <  SRR4302536.1570841/94‑1 (MQ=60)
                                   GACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCT                                                            >  SRR4302536.4346048/1‑94 (MQ=60)
                                   GACTTTCGCTAACGGCAATTCATCCTGATGATTCATCTTACCCATTCCTTACGCAGGGGGTAGATTGTGTGCCTCCAGATCGGCGGCAATATCT                                                            <  SRR4302536.5533189/94‑1 (MQ=60)
                                    ACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTT                                                           >  SRR4302536.1401248/1‑94 (MQ=60)
                                    ACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTT                                                           <  SRR4302536.2394174/94‑1 (MQ=60)
                                     CTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTC                                                          <  SRR4302536.5947436/94‑1 (MQ=60)
                                     CTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTC                                                          >  SRR4302536.428152/1‑94 (MQ=60)
                                      TTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCC                                                         <  SRR4302536.3665537/94‑1 (MQ=60)
                                        TCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAG                                                       <  SRR4302536.1425119/94‑1 (MQ=60)
                                         CGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGC                                                      <  SRR4302536.4126701/94‑1 (MQ=60)
                                         CGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGC                                                      >  SRR4302536.2504249/1‑94 (MQ=60)
                                         CGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGC                                                      <  SRR4302536.864905/94‑1 (MQ=60)
                                         CGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGC                                                      <  SRR4302536.753895/94‑1 (MQ=60)
                                          GCTAACGGCAATTCATCCTGATGGATCATCTTACCCATTCCTTACGCGGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCC                                                     >  SRR4302536.5529111/1‑94 (MQ=60)
                                           CTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCC                                                    >  SRR4302536.4537816/1‑94 (MQ=60)
                                            TAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCC                                                   >  SRR4302536.1777116/1‑94 (MQ=60)
                                             AACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCC                                                  >  SRR4302536.5709524/1‑94 (MQ=60)
                                             AACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCA                                                  <  SRR4302536.1449800/94‑1 (MQ=60)
                                             AACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCA                                                  <  SRR4302536.477868/94‑1 (MQ=60)
                                             AACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCA                                                  >  SRR4302536.6587135/1‑94 (MQ=60)
                                              ACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAG                                                 >  SRR4302536.488603/1‑94 (MQ=60)
                                              ACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAG                                                 <  SRR4302536.4099237/94‑1 (MQ=60)
                                              ACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAC                                                 >  SRR4302536.2013605/1‑94 (MQ=60)
                                                GGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGAC                                               >  SRR4302536.2283754/1‑94 (MQ=60)
                                                 GCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGGAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCCGCCCCAGACG                                              >  SRR4302536.5616559/1‑94 (MQ=60)
                                                  CAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGC                                             >  SRR4302536.1622517/1‑94 (MQ=60)
                                                    ATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTG                                           >  SRR4302536.5678250/1‑94 (MQ=60)
                                                        ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCTGCAATATCTTCCAGCCCCAGACGCTGCAAT                                       >  SRR4302536.5389228/1‑94 (MQ=60)
                                                        ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                       <  SRR4302536.1358392/94‑1 (MQ=60)
                                                        ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                       >  SRR4302536.3854513/1‑94 (MQ=60)
                                                        ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                       >  SRR4302536.2284981/1‑94 (MQ=60)
                                                        ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                       >  SRR4302536.754644/1‑94 (MQ=60)
                                                        ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                       <  SRR4302536.4413664/94‑1 (MQ=60)
                                                         TCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATG                                      >  SRR4302536.2620499/1‑94 (MQ=60)
                                                          CCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGT                                     >  SRR4302536.649125/1‑94 (MQ=60)
                                                          CCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGT                                     >  SRR4302536.1511573/1‑94 (MQ=60)
                                                           CTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTT                                    >  SRR4302536.3105747/1‑94 (MQ=60)
                                                           CTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTT                                    >  SRR4302536.5111395/1‑94 (MQ=60)
                                                           CTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTT                                    <  SRR4302536.5564652/94‑1 (MQ=60)
                                                           CTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTT                                    >  SRR4302536.3364356/1‑94 (MQ=60)
                                                           CTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTT                                    >  SRR4302536.2958238/1‑94 (MQ=60)
                                                            TGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTT                                   >  SRR4302536.543061/1‑94 (MQ=60)
                                                            TGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTT                                   >  SRR4302536.467354/1‑94 (MQ=60)
                                                            TGATGGTTCATCTTACCCATGCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTT                                   <  SRR4302536.4166460/94‑1 (MQ=60)
                                                               TGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGC                                >  SRR4302536.1635744/1‑94 (MQ=60)
                                                                GGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCG                               >  SRR4302536.3763172/1‑94 (MQ=60)
                                                                 GTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGG                              >  SRR4302536.1121817/1‑94 (MQ=60)
                                                                   TCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGT                            >  SRR4302536.2891742/1‑94 (MQ=60)
                                                                   TCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGT                            <  SRR4302536.3686178/94‑1 (MQ=60)
                                                                    CATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTT                           >  SRR4302536.5920741/1‑94 (MQ=60)
                                                                    CATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTT                           <  SRR4302536.5003316/94‑1 (MQ=60)
                                                                    CATCTTACCCATTCCGTACGCAGGCGGTAGATTGTGTCCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTT                           <  SRR4302536.1078733/94‑1 (MQ=60)
                                                                     ATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTG                          <  SRR4302536.2109619/94‑1 (MQ=60)
                                                                       CTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGA                        <  SRR4302536.2320316/94‑1 (MQ=60)
                                                                       CTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGA                        >  SRR4302536.2502609/1‑94 (MQ=60)
                                                                        TTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGAC                       >  SRR4302536.3142041/1‑94 (MQ=60)
                                                                         TACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACA                      >  SRR4302536.6282072/1‑94 (MQ=60)
                                                                         TACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACA                      >  SRR4302536.6176420/1‑94 (MQ=60)
                                                                          ACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAA                     <  SRR4302536.1944711/94‑1 (MQ=60)
                                                                          ACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAA                     >  SRR4302536.5748789/1‑94 (MQ=60)
                                                                           CCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAC                    >  SRR4302536.6620943/1‑94 (MQ=60)
                                                                           CCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAC                    >  SRR4302536.308585/1‑94 (MQ=60)
                                                                            CCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACC                   <  SRR4302536.6279764/94‑1 (MQ=60)
                                                                             CATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCA                  <  SRR4302536.4544591/94‑1 (MQ=60)
                                                                             CATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAACA                  >  SRR4302536.2069327/1‑94 (MQ=60)
                                                                              ATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAA                 >  SRR4302536.1363080/1‑94 (MQ=60)
                                                                              ATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAA                 >  SRR4302536.1911668/1‑94 (MQ=60)
                                                                               TTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAG                >  SRR4302536.6577840/1‑94 (MQ=60)
                                                                               TTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAG                >  SRR4302536.4431400/1‑94 (MQ=60)
                                                                                 CCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCT              >  SRR4302536.4519789/1‑94 (MQ=60)
                                                                                 CCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCT              >  SRR4302536.6305852/1‑94 (MQ=60)
                                                                                 CCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAACAAGCT              >  SRR4302536.4995260/1‑94 (MQ=60)
                                                                                  CTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTG             <  SRR4302536.6678506/94‑1 (MQ=60)
                                                                                   TTACGCAGGCGGTGGATTGTGTGCCGCCAGATAGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGT            >  SRR4302536.5503964/1‑94 (MQ=60)
                                                                                    TACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGGCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG           >  SRR4302536.6208363/1‑94 (MQ=60)
                                                                                    TACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG           <  SRR4302536.5005543/94‑1 (MQ=60)
                                                                                    TACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG           >  SRR4302536.681861/1‑94 (MQ=60)
                                                                                    TACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG           <  SRR4302536.486521/94‑1 (MQ=60)
                                                                                    TACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG           <  SRR4302536.3267541/94‑1 (MQ=60)
                                                                                     ACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGG          <  SRR4302536.1598620/94‑1 (MQ=60)
                                                                                     ACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGG          <  SRR4302536.4931644/94‑1 (MQ=60)
                                                                                     ACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGG          <  SRR4302536.5810371/94‑1 (MQ=60)
                                                                                      CGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCCGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGG         >  SRR4302536.495829/1‑94 (MQ=60)
                                                                                      CGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGG         <  SRR4302536.4442051/94‑1 (MQ=60)
                                                                                       GCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGT        <  SRR4302536.2217522/94‑1 (MQ=60)
                                                                                       GCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGT        <  SRR4302536.462731/94‑1 (MQ=60)
                                                                                       GCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGT        >  SRR4302536.2770748/1‑94 (MQ=60)
                                                                                        CAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTC       >  SRR4302536.5682029/1‑94 (MQ=60)
                                                                                        CAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTC       <  SRR4302536.194409/94‑1 (MQ=60)
                                                                                        CAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGGTGGACAACCAAGCTGTGGGTC       >  SRR4302536.2320587/1‑94 (MQ=60)
                                                                                         AGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCC      >  SRR4302536.30830/1‑94 (MQ=60)
                                                                                          GGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTTCAGCCCCAGAGGCTGGAATGTTTCGCGGGTTGGACAACCAAGCTGCGGGGCCC     >  SRR4302536.3541582/1‑94 (MQ=60)
                                                                                          GGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCC     <  SRR4302536.2216597/94‑1 (MQ=60)
                                                                                           GCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCA    <  SRR4302536.2223610/94‑1 (MQ=60)
                                                                                           GCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCA    <  SRR4302536.4322450/94‑1 (MQ=60)
                                                                                            CGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAG   <  SRR4302536.257053/94‑1 (MQ=60)
                                                                                            CGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAG   >  SRR4302536.6729788/1‑94 (MQ=60)
                                                                                             GGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGC  >  SRR4302536.3734914/1‑94 (MQ=60)
                                                                                             |                                                                                             
TGCAACCATTGCCGCTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGC  >  NC_000913/1749669‑1749855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑