Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,791,400 T→C Q61Q (CAA→CAG)  btuD ← ATP‑binding component of vitamin B12 transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,791,4000TC100.0% 629.9 / NA 197Q61Q (CAA→CAG) btuDATP‑binding component of vitamin B12 transport system
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (91/106);  total (91/106)

Only 100 of 204 total aligned reads displayed.

GCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCA  >  NC_000913/1791309‑1791488
                                                                                           |                                                                                        
gCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGtt                                                                                         <  2:3153062/93‑1 (MQ=255)
 ccAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTg                                                                                        <  1:1333449/93‑1 (MQ=255)
   aGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTggc                                                                                      >  2:100379/1‑91 (MQ=255)
   aGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGcc                                                                                      >  2:5579291/1‑93 (MQ=255)
   aGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGcc                                                                                      >  1:2730827/1‑93 (MQ=255)
     aCCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGcccc                                                                                    >  2:2407567/1‑93 (MQ=255)
     aCCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGcccc                                                                                    <  1:2888730/93‑1 (MQ=255)
     aCCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGcccc                                                                                    <  1:1533954/93‑1 (MQ=255)
       cGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCcgc                                                                                  >  2:2908026/1‑93 (MQ=255)
          cGTTGCAACCGGCGGCGTCTGCTGTTGTGAAAGATAGGCACGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGaa                                                                               >  1:2049359/1‑93 (MQ=255)
          cGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGaa                                                                               >  1:3688141/1‑93 (MQ=255)
           gTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAAc                                                                              <  2:2808270/93‑1 (MQ=255)
              gCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGa                                                                           >  2:2286633/1‑93 (MQ=255)
               cAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGaa                                                                          >  1:1631643/1‑93 (MQ=255)
               cAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGaa                                                                          >  1:2449014/1‑93 (MQ=255)
                aaaCGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAAt                                                                         <  1:3819044/93‑1 (MQ=255)
                aaaCGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAAt                                                                         >  1:2851525/1‑93 (MQ=255)
                 aaCGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATg                                                                        <  1:3453436/93‑1 (MQ=255)
                  aCGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGc                                                                       >  2:3995134/1‑93 (MQ=255)
                  aCGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGc                                                                       >  2:4856870/1‑93 (MQ=255)
                   cggcggCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCt                                                                      <  1:4453238/93‑1 (MQ=255)
                    ggcggcGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCtt                                                                     >  2:68597/1‑93 (MQ=255)
                     gcggcgTCTGCTGTTGTGAAAGATAGGCGCTATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTc                                                                    <  1:901244/93‑1 (MQ=255)
                     gcggcgTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTc                                                                    >  1:958953/1‑93 (MQ=255)
                       ggcgTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTccc                                                                  >  2:5204356/1‑93 (MQ=255)
                       gacgTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTccc                                                                  <  2:5755735/91‑1 (MQ=255)
                        gcgTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCt                                                                 <  1:5317613/93‑1 (MQ=255)
                        gcgTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCt                                                                 <  1:1418911/93‑1 (MQ=255)
                        gcgTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCt                                                                 <  2:4355401/93‑1 (MQ=255)
                          gTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTa                                                               >  2:5484251/1‑93 (MQ=255)
                          gTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCCTCCCTTa                                                               >  1:6315398/1‑93 (MQ=255)
                           tCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTAc                                                              >  2:2699750/1‑93 (MQ=255)
                           tCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTAc                                                              <  1:1601377/93‑1 (MQ=255)
                           tCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTAc                                                              >  1:5023714/1‑93 (MQ=255)
                             tgctgTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCg                                                            >  2:5151454/1‑93 (MQ=255)
                             tgctgTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCg                                                            <  1:598170/93‑1 (MQ=255)
                              gctgTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGc                                                           <  2:704842/93‑1 (MQ=255)
                                  ttgtGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGt                                                       >  1:2593086/1‑93 (MQ=255)
                                   tgtgAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTc                                                      <  1:466889/93‑1 (MQ=255)
                                    gtgAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGCACTGAATGCTTCCCTTACCGCTTGTCa                                                     >  1:5484764/1‑93 (MQ=255)
                                     tgAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCAt                                                    <  2:3360430/93‑1 (MQ=255)
                                     tgAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCAt                                                    >  1:755741/1‑93 (MQ=255)
                                        aaGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTcc                                                 <  2:4656944/93‑1 (MQ=255)
                                        aaGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTcc                                                 >  2:2991505/1‑93 (MQ=255)
                                        aaGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTcc                                                 <  1:6418134/93‑1 (MQ=255)
                                        aaGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTcc                                                 <  1:67420/93‑1 (MQ=255)
                                         aGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCg                                                <  2:5852598/93‑1 (MQ=255)
                                         aGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCg                                                >  2:6084722/1‑93 (MQ=255)
                                          gATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCgg                                               <  1:3377242/93‑1 (MQ=255)
                                            tAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGcc                                             <  2:5082465/93‑1 (MQ=255)
                                              ggCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAt                                           <  2:1503476/93‑1 (MQ=255)
                                              ggCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGGCATTCCGGCCAt                                           >  1:5346359/1‑93 (MQ=255)
                                               gcgcGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAtt                                          <  2:3850688/93‑1 (MQ=255)
                                               gcgcGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAtt                                          <  1:4882130/93‑1 (MQ=255)
                                                cgcgATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTc                                         <  2:3700125/93‑1 (MQ=255)
                                                cgcgATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTc                                         <  2:6506725/93‑1 (MQ=255)
                                                 gcgATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTcg                                        <  2:5174944/93‑1 (MQ=255)
                                                 gcgATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTcg                                        >  2:6375252/1‑93 (MQ=255)
                                                  cgATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTcgc                                       <  1:2434180/93‑1 (MQ=255)
                                                  cgATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTcgc                                       <  2:2465018/93‑1 (MQ=255)
                                                   gATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTcgcg                                      >  1:1505555/1‑93 (MQ=255)
                                                     tGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGcc                                    >  1:936707/1‑93 (MQ=255)
                                                     tGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGcc                                    >  1:404292/1‑93 (MQ=255)
                                                        aGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTTGCGCCAGt                                 >  2:272244/1‑93 (MQ=255)
                                                        aGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGt                                 >  1:6635960/1‑93 (MQ=255)
                                                         gcgcGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGtc                                >  1:5140343/1‑92 (MQ=255)
                                                          cgcgAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTaa                               <  2:3059135/93‑1 (MQ=255)
                                                          cgcgAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTaa                               >  2:3208334/1‑93 (MQ=255)
                                                             gAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGt                            >  2:4872991/1‑93 (MQ=255)
                                                             gAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGt                            <  2:393541/93‑1 (MQ=255)
                                                              aGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTa                           >  1:2070898/1‑93 (MQ=255)
                                                              aGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCAGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTa                           <  1:6448066/93‑1 (MQ=255)
                                                               gTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAc                          <  2:1846342/93‑1 (MQ=255)
                                                                ttttGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAct                         >  1:3845741/1‑93 (MQ=255)
                                                                 tttGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTActc                        >  1:1361840/1‑93 (MQ=255)
                                                                 tttGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTActc                        <  1:1272582/93‑1 (MQ=255)
                                                                 tttGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTActc                        <  1:3252178/93‑1 (MQ=255)
                                                                 tttGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTActc                        <  1:3084862/93‑1 (MQ=255)
                                                                  ttgttgCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTActct                       <  2:6138070/93‑1 (MQ=255)
                                                                  ttgttgCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTActct                       <  2:1363642/93‑1 (MQ=255)
                                                                    gttgCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTa                     <  1:2923567/93‑1 (MQ=255)
                                                                     ttgCGGGCCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAc                    <  1:5159352/93‑1 (MQ=255)
                                                                      tgCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAcc                   <  1:3912918/93‑1 (MQ=255)
                                                                       gCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAATCTTAccc                  <  1:6564649/93‑1 (MQ=255)
                                                                         ggACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCcgc                >  1:4364853/1‑93 (MQ=255)
                                                                         ggACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCcgc                >  1:2194843/1‑93 (MQ=255)
                                                                          gACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCcgcg               <  1:4152849/93‑1 (MQ=255)
                                                                          gACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACAcgcg               >  1:6065180/1‑93 (MQ=255)
                                                                            ccATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGcc             >  2:3759614/1‑93 (MQ=255)
                                                                            ccATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGcc             >  2:1272725/1‑93 (MQ=255)
                                                                             cATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCa            >  1:1059350/1‑93 (MQ=255)
                                                                              aTGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCAt           >  2:4137325/1‑93 (MQ=255)
                                                                              aTGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCAt           <  2:2524048/93‑1 (MQ=255)
                                                                              aTGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCAt           <  1:352699/93‑1 (MQ=255)
                                                                              aTGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCAt           <  1:1164641/93‑1 (MQ=255)
                                                                               tGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCAtt          >  1:1865582/1‑93 (MQ=255)
                                                                                gCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTc         <  1:5703583/93‑1 (MQ=255)
                                                                                 cTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCg        >  1:6010525/1‑93 (MQ=255)
                                                                                    ccAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGGACTCTTACCCGCGCCATTCCGcc     >  2:4095969/1‑93 (MQ=255)
                                                                                       gTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGccccc  >  1:1848344/1‑92 (MQ=255)
                                                                                           |                                                                                        
GCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCA  >  NC_000913/1791309‑1791488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGG  >  NC_000913/1791307‑1791493
                                                                                             |                                                                                             
GTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGC                                                                                               >  SRR4302536.2982426/1‑94 (MQ=60)
 TGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCT                                                                                              >  SRR4302536.6895298/1‑94 (MQ=60)
 TGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCT                                                                                              <  SRR4302536.1248465/94‑1 (MQ=60)
 TGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCT                                                                                              <  SRR4302536.6521584/94‑1 (MQ=60)
 TGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCT                                                                                              <  SRR4302536.3691024/94‑1 (MQ=60)
 TGCAAGTCCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGTACCATGCTTCCAGTGGCT                                                                                              <  SRR4302536.6888366/94‑1 (MQ=60)
  GCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTG                                                                                             <  SRR4302536.3192207/94‑1 (MQ=60)
   CCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGC                                                                                            <  SRR4302536.1373253/94‑1 (MQ=60)
    CAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCC                                                                                           >  SRR4302536.2812230/1‑94 (MQ=60)
     AGACCGGCGTTGCAAACTGCGGCGTCTGCTGTTGTGGAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTGCAGTGGCAGCCC                                                                                          <  SRR4302536.249418/94‑1 (MQ=60)
     AGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGCTTTGTTGCGGACCATGCTTCCCGTGGCTGCCC                                                                                          >  SRR4302536.4016916/1‑94 (MQ=60)
      GACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCC                                                                                         <  SRR4302536.3009032/94‑1 (MQ=60)
       ACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCG                                                                                        >  SRR4302536.3938576/1‑94 (MQ=60)
       ACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCG                                                                                        <  SRR4302536.2973926/94‑1 (MQ=60)
       ACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCG                                                                                        <  SRR4302536.1579080/94‑1 (MQ=60)
           GCGTTGCAACCGGCGGCGTCTGCTGTTGTGAAAGATAGGCACGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAA                                                                                    >  SRR4302536.2111072/1‑94 (MQ=60)
           GCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAA                                                                                    >  SRR4302536.3798448/1‑94 (MQ=60)
            CGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAAC                                                                                   >  SRR4302536.6224137/1‑94 (MQ=60)
            CGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAAC                                                                                   >  SRR4302536.5660602/1‑94 (MQ=60)
            CGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAAC                                                                                   >  SRR4302536.2956687/1‑94 (MQ=60)
             GTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACT                                                                                  >  SRR4302536.657545/1‑94 (MQ=60)
              TTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTG                                                                                 >  SRR4302536.1450519/1‑94 (MQ=60)
               TGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGA                                                                                >  SRR4302536.5503367/1‑94 (MQ=60)
                GCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAA                                                                               >  SRR4302536.1679137/1‑94 (MQ=60)
                GCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAA                                                                               >  SRR4302536.2522997/1‑94 (MQ=60)
                 CAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAAT                                                                              >  SRR4302536.2935820/1‑94 (MQ=60)
                 CAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAAT                                                                              >  SRR4302536.5941584/1‑94 (MQ=60)
                  AAACGTCGCCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATCCTTCCAGTGGCTGCCCCGCGAACTCAATG                                                                             <  SRR4302536.3099738/94‑1 (MQ=60)
                  AAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATG                                                                             <  SRR4302536.3932858/94‑1 (MQ=60)
                  AAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATG                                                                             >  SRR4302536.518768/1‑94 (MQ=60)
                   AACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGC                                                                            <  SRR4302536.3556299/94‑1 (MQ=60)
                     CTGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTT                                                                          <  SRR4302536.1015963/94‑1 (MQ=60)
                     CGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTT                                                                          <  SRR4302536.3567276/94‑1 (MQ=60)
                     CGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTT                                                                          <  SRR4302536.1656577/94‑1 (MQ=60)
                     CGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTT                                                                          <  SRR4302536.4587003/94‑1 (MQ=60)
                      GGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTC                                                                         >  SRR4302536.987300/1‑94 (MQ=60)
                      GGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTC                                                                         >  SRR4302536.4202349/1‑94 (MQ=60)
                       GCGGCGTCTGCTGTTGTGAAAGATAGGCGCTATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCC                                                                        <  SRR4302536.927797/94‑1 (MQ=60)
                        CGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTTCC                                                                       >  SRR4302536.6183040/1‑94 (MQ=60)
                          GCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTT                                                                     <  SRR4302536.5476452/94‑1 (MQ=60)
                          GCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTT                                                                     <  SRR4302536.1461092/94‑1 (MQ=60)
                          GCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTT                                                                     <  SRR4302536.1558772/94‑1 (MQ=60)
                           CGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCCTCCCTTA                                                                    >  SRR4302536.6503520/1‑94 (MQ=60)
                            TTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCACGCGGACTGGATGCTTCCCATAC                                                                   >  SRR4302536.6620543/1‑94 (MQ=60)
                            GTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTAC                                                                   >  SRR4302536.5174297/1‑94 (MQ=60)
                            GTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTAC                                                                   >  SRR4302536.1132718/1‑94 (MQ=60)
                            GTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTAC                                                                   >  SRR4302536.6439360/1‑94 (MQ=60)
                            GTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTAC                                                                   >  SRR4302536.551773/1‑94 (MQ=60)
                             TCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACC                                                                  <  SRR4302536.1648115/94‑1 (MQ=60)
                               TGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGC                                                                <  SRR4302536.615104/94‑1 (MQ=60)
                                GCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCT                                                               <  SRR4302536.2161533/94‑1 (MQ=60)
                                 CTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTG                                                              <  SRR4302536.1904194/94‑1 (MQ=60)
                                 CTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTG                                                              >  SRR4302536.950596/1‑94 (MQ=60)
                                   GTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGT                                                            >  SRR4302536.2670939/1‑94 (MQ=60)
                                     TGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGCACTGAATGCTTCCCTTACCGCTTGTCA                                                          >  SRR4302536.5648505/1‑94 (MQ=60)
                                     TGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCA                                                          <  SRR4302536.479082/94‑1 (MQ=60)
                                     TGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCA                                                          <  SRR4302536.77844/94‑1 (MQ=60)
                                      GTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCAT                                                         >  SRR4302536.777912/1‑94 (MQ=60)
                                       TGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATT                                                        <  SRR4302536.1682927/94‑1 (MQ=60)
                                          AAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCG                                                     <  SRR4302536.6609936/94‑1 (MQ=60)
                                          AAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCG                                                     <  SRR4302536.69259/94‑1 (MQ=60)
                                           AGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGG                                                    <  SRR4302536.4867052/94‑1 (MQ=60)
                                           AGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGG                                                    <  SRR4302536.748544/94‑1 (MQ=60)
                                            GATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGC                                                   <  SRR4302536.3477594/94‑1 (MQ=60)
                                               AGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAT                                                >  SRR4302536.6923777/1‑94 (MQ=60)
                                               AGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAT                                                >  SRR4302536.5332792/1‑94 (MQ=60)
                                               AGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGGCATTCCGGCCAT                                                >  SRR4302536.5506011/1‑94 (MQ=60)
                                                GGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCCTTCCGGCCCTT                                               >  SRR4302536.1323254/1‑94 (MQ=60)
                                                 GCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTC                                              <  SRR4302536.5029009/94‑1 (MQ=60)
                                                 GCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTC                                              <  SRR4302536.2512649/94‑1 (MQ=60)
                                                 GCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTC                                              <  SRR4302536.4127413/94‑1 (MQ=60)
                                                 GCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTC                                              <  SRR4302536.1300272/94‑1 (MQ=60)
                                                  CGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCG                                             >  SRR4302536.2357631/1‑94 (MQ=60)
                                                  CGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCG                                             >  SRR4302536.66545/1‑94 (MQ=60)
                                                  CGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCG                                             >  SRR4302536.3511235/1‑94 (MQ=60)
                                                   GCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGC                                            >  SRR4302536.2123605/1‑94 (MQ=60)
                                                    CGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCG                                           <  SRR4302536.2507773/94‑1 (MQ=60)
                                                    CGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCG                                           >  SRR4302536.1549928/1‑94 (MQ=60)
                                                     GATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGC                                          <  SRR4302536.2690507/94‑1 (MQ=60)
                                                     GATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGC                                          >  SRR4302536.5048237/1‑94 (MQ=60)
                                                      ATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCC                                         <  SRR4302536.6771292/94‑1 (MQ=60)
                                                      ATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCC                                         >  SRR4302536.964318/1‑94 (MQ=60)
                                                      ATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCC                                         >  SRR4302536.414964/1‑94 (MQ=60)
                                                       TGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCA                                        <  SRR4302536.981156/94‑1 (MQ=60)
                                                         CAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGT                                      >  SRR4302536.6833317/1‑94 (MQ=60)
                                                          AGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTC                                     >  SRR4302536.5293779/1‑94 (MQ=60)
                                                           GCGCGATTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAA                                    <  SRR4302536.52888/94‑1 (MQ=60)
                                                             GCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGGCCCGCGAAATGAATGCTTCCCTTACCGCTGGTCATTCCGGCCCTTCGCGCCAGTAAGG                                  >  SRR4302536.1500378/1‑94 (MQ=60)
                                                             GCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGG                                  >  SRR4302536.1401408/1‑94 (MQ=60)
                                                               GAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTA                                >  SRR4302536.2133300/1‑94 (MQ=60)
                                                                AGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAC                               <  SRR4302536.2834714/94‑1 (MQ=60)
                                                                AGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAC                               <  SRR4302536.2560035/94‑1 (MQ=60)
                                                                AGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCAGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAC                               <  SRR4302536.6640679/94‑1 (MQ=60)
                                                                 GTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACT                              >  SRR4302536.3960236/1‑94 (MQ=60)
                                                                  TTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTC                             <  SRR4302536.4307308/94‑1 (MQ=60)
                                                                  TTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTC                             >  SRR4302536.1402438/1‑94 (MQ=60)
                                                                   TTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCT                            <  SRR4302536.1310698/94‑1 (MQ=60)
                                                                   TTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCT                            <  SRR4302536.3175096/94‑1 (MQ=60)
                                                                   TTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCT                            <  SRR4302536.3347521/94‑1 (MQ=60)
                                                                      GTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAC                         <  SRR4302536.3009829/94‑1 (MQ=60)
                                                                      GTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAC                         <  SRR4302536.3358411/94‑1 (MQ=60)
                                                                       TTGCGGGCCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACC                        <  SRR4302536.5313297/94‑1 (MQ=60)
                                                                        TGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCC                       <  SRR4302536.4029235/94‑1 (MQ=60)
                                                                         GCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAATCTTACCCG                      <  SRR4302536.6760047/94‑1 (MQ=60)
                                                                          CGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGC                     >  SRR4302536.2261081/1‑94 (MQ=60)
                                                                          CGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGC                     >  SRR4302536.4495286/1‑94 (MQ=60)
                                                                          CGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGCAAGGTACTCTTACCCGC                     >  SRR4302536.3746937/1‑94 (MQ=60)
                                                                           GGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACACGCG                    >  SRR4302536.6246120/1‑94 (MQ=60)
                                                                            GACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGC                   <  SRR4302536.4276096/94‑1 (MQ=60)
                                                                              CCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCA                 >  SRR4302536.1091036/1‑94 (MQ=60)
                                                                               CATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCAT                <  SRR4302536.4500791/94‑1 (MQ=60)
                                                                                ATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATT               <  SRR4302536.1199696/94‑1 (MQ=60)
                                                                                ATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATT               <  SRR4302536.362040/94‑1 (MQ=60)
                                                                                ATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATT               >  SRR4302536.1921745/1‑94 (MQ=60)
                                                                                 TGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACGCTTACCCGCGCCATTC              <  SRR4302536.4726136/94‑1 (MQ=60)
                                                                                  GCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCG             <  SRR4302536.3323407/94‑1 (MQ=60)
                                                                                  GCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCG             >  SRR4302536.6189720/1‑94 (MQ=60)
                                                                                  GCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCG             <  SRR4302536.5873182/94‑1 (MQ=60)
                                                                                  GCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATCCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCG             <  SRR4302536.347737/94‑1 (MQ=60)
                                                                                   CTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGG            <  SRR4302536.6750301/94‑1 (MQ=60)
                                                                                   CTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGG            >  SRR4302536.1610749/1‑94 (MQ=60)
                                                                                       CAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGGCCC        >  SRR4302536.2062627/1‑94 (MQ=60)
                                                                                        AGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCC       >  SRR4302536.1904043/1‑94 (MQ=60)
                                                                                        AGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCA       <  SRR4302536.380663/94‑1 (MQ=60)
                                                                                           GGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCA    >  SRR4302536.6903980/1‑94 (MQ=60)
                                                                                           GGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCA    <  SRR4302536.5313229/94‑1 (MQ=60)
                                                                                             CTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGG  <  SRR4302536.5007636/94‑1 (MQ=60)
                                                                                             |                                                                                             
GTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGG  >  NC_000913/1791307‑1791493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑