Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,793,668 |
A→G |
R767R (CGT→CGC) |
pheT ← |
phenylalanine tRNA synthetase beta‑subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,793,668 | 0 | A | G | 98.4%
| 402.1
/ ‑4.6
| 126 | R767R (CGT→CGC) | pheT | phenylalanine tRNA synthetase beta‑subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base G (65/59); total (65/61) |
| Fisher's exact test for biased strand distribution p-value = 2.32e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 |
Only 100 of 130 total aligned reads displayed.
GGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTAC > NC_000913/1793578‑1793757
|
aaTCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTgg > 2:3737129/1‑93 (MQ=255)
tCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTa > 2:365510/1‑93 (MQ=255)
cccTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTAt < 1:1426453/93‑1 (MQ=255)
cccTCAATGATGCCTGGAATCGCGCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTAt > 2:3964391/1‑93 (MQ=255)
ccTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATc < 1:401086/93‑1 (MQ=255)
cTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCt > 2:4056230/1‑93 (MQ=255)
cTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCt < 1:245246/93‑1 (MQ=255)
cAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTg < 2:2104895/93‑1 (MQ=255)
cAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGCGTGCGGCTGGTATCTTg > 2:3061538/1‑93 (MQ=255)
aaTGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGc < 1:3656448/93‑1 (MQ=255)
atgatgCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCa < 1:2212342/93‑1 (MQ=255)
atgatgCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCa > 1:742922/1‑93 (MQ=255)
tgatgCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAg < 1:639535/93‑1 (MQ=255)
tgatgCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAg < 1:2926511/93‑1 (MQ=255)
tgatgCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAACCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAg > 2:1161511/1‑93 (MQ=255)
atgCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGa > 1:874056/1‑93 (MQ=255)
gCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATc < 1:4513815/93‑1 (MQ=255)
gCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATc < 2:2381110/93‑1 (MQ=255)
gCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATc < 2:251661/93‑1 (MQ=255)
gCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAACCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATc < 2:3938612/93‑1 (MQ=255)
ccTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCa < 2:4428420/93‑1 (MQ=255)
ccTAGAATCGCTCTTTTAATACCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCa < 2:2878110/93‑1 (MQ=255)
cTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAg < 2:3259112/93‑1 (MQ=255)
tGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAgg < 1:4074139/93‑1 (MQ=255)
tGGAATCGCTCTTTTAATGCATCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAAGATCAgg > 2:1999317/1‑93 (MQ=255)
ggAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGc > 1:2203466/1‑93 (MQ=255)
ggAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGc < 2:749762/93‑1 (MQ=255)
ggAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAACCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGc > 2:478724/1‑93 (MQ=255)
gAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCt < 2:1129184/93‑1 (MQ=255)
aTCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTa > 1:3958853/1‑93 (MQ=255)
tCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTAt > 1:1018574/1‑93 (MQ=255)
tCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTAt > 1:3423250/1‑93 (MQ=255)
tCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGGATCTTGCAGGATCAGGCTTAt > 2:1122096/1‑93 (MQ=255)
cGCTCTTTTAATGCCTCTACGCAATTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATg < 2:1682381/93‑1 (MQ=255)
cGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATg < 2:3235947/93‑1 (MQ=255)
gCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATgg < 2:4570495/93‑1 (MQ=255)
tctTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCg < 1:610485/93‑1 (MQ=255)
ctTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGa < 1:2765522/93‑1 (MQ=255)
ttttAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAg > 1:776847/1‑93 (MQ=255)
ttttAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGGGTGCGGCTGGTATCTTGTAGGATCAGGCTTATGGCGAg < 2:2439117/93‑1 (MQ=255)
ttAATGCCTCTACACATTTGGCGACGGTAGCCGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGc < 1:1628757/93‑1 (MQ=255)
aTGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGctct < 1:3706214/93‑1 (MQ=255)
aTGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGctct < 2:758613/93‑1 (MQ=255)
aTGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGctct > 2:1018140/1‑93 (MQ=255)
ctctACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTtata > 2:3451713/1‑93 (MQ=255)
ctctACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTtata < 2:388299/93‑1 (MQ=255)
ctACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATAcc > 1:3692631/1‑93 (MQ=255)
tACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATAccc > 1:3428396/1‑93 (MQ=255)
tACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATAccc > 2:2372726/1‑93 (MQ=255)
cacacATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATAccc < 1:1610012/92‑1 (MQ=255)
cacaTTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCt > 1:3227097/1‑93 (MQ=255)
caTTTGGCGGCGGTAGCGGGAATTCCCTCTTCTTCGAGGGTTGGGCTGGTATCTTTCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTcc < 1:872242/93‑1 (MQ=255)
caTTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTcc < 1:4479272/93‑1 (MQ=255)
aTTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCg > 2:1727399/1‑93 (MQ=255)
tttGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGc > 2:1153054/1‑93 (MQ=255)
ggCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAac < 2:2893389/93‑1 (MQ=255)
gCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAaca > 2:121582/1‑93 (MQ=255)
cGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAacac < 1:200883/93‑1 (MQ=255)
gcGGGAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACAccc < 2:4061166/92‑1 (MQ=255)
aCGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACAccc < 1:288708/93‑1 (MQ=255)
cgctAGCGGCAACCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCt < 2:2986522/90‑1 (MQ=255)
cGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCt < 2:2986521/93‑1 (MQ=255)
gTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTa < 2:4617296/93‑1 (MQ=255)
gTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTa > 2:163557/1‑93 (MQ=255)
gCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACcg > 2:4347708/1‑93 (MQ=255)
ggCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACcgcg > 2:2285960/1‑93 (MQ=255)
gCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCgg < 1:1470850/93‑1 (MQ=255)
gCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCgg < 2:3379877/93‑1 (MQ=255)
cAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGt > 2:1810351/1‑93 (MQ=255)
cAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGt > 2:1797106/1‑93 (MQ=255)
cAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGt > 2:1810352/1‑93 (MQ=255)
cAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGt < 2:3534815/93‑1 (MQ=255)
aaTCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTa > 2:857664/1‑93 (MQ=255)
aaTCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTa > 1:4739963/1‑93 (MQ=255)
aTCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTac > 2:4692959/1‑93 (MQ=255)
tctcCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTaca > 1:1695117/1‑93 (MQ=255)
ctcctcTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATCCCCCTCCGCAACACCCTTACCGCGGTacac < 1:976503/93‑1 (MQ=255)
tcctcTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACg > 2:1802270/1‑93 (MQ=255)
tcctcTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACg > 2:4061673/1‑93 (MQ=255)
tcctcTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACg > 1:620202/1‑93 (MQ=255)
cctcTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGt > 2:3377350/1‑93 (MQ=255)
cctcTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGt > 1:2544659/1‑93 (MQ=255)
cctcTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGt < 2:1177149/93‑1 (MQ=255)
cctcTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGt < 2:3265324/93‑1 (MQ=255)
ctctTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTc < 1:2314930/93‑1 (MQ=255)
tcttctTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCa > 1:260759/1‑93 (MQ=255)
tcttctTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACACCTCCGCAACACCCTTACCGCGGTACACGTCa > 1:1819847/1‑93 (MQ=255)
cttcttCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCaa > 1:4347796/1‑93 (MQ=255)
cttcttCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCaa > 2:3036299/1‑93 (MQ=255)
ttcttcGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCaaa > 2:293451/1‑93 (MQ=255)
cttcGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATa < 1:2195102/93‑1 (MQ=255)
cttcGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCGCCGCAACACCCTTACCGCGGTACACGTCAAATa < 2:4616994/93‑1 (MQ=255)
ttcGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATaa < 2:4367886/93‑1 (MQ=255)
tcGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAg > 1:1402506/1‑93 (MQ=255)
tcGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAg < 1:3059539/93‑1 (MQ=255)
gAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGtt < 2:4602975/93‑1 (MQ=255)
aGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGttt < 2:605361/93‑1 (MQ=255)
gtgtGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTa > 1:1918135/1‑93 (MQ=255)
gtgtGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTa > 2:4021090/1‑93 (MQ=255)
tgtgCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTAc > 1:4531315/1‑93 (MQ=255)
|
GGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTAC > NC_000913/1793578‑1793757
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCA > NC_000913/1793575‑1793761
|
ATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTG < SRR4302544.770528/94‑1 (MQ=60)
AGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCG < SRR4302544.4343659/94‑1 (MQ=60)
AGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTATACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCG < SRR4302544.1034108/94‑1 (MQ=60)
GGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGG < SRR4302544.638745/94‑1 (MQ=60)
TTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCT > SRR4302544.858163/1‑94 (MQ=60)
CCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATC < SRR4302544.1440643/94‑1 (MQ=60)
CCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCT < SRR4302544.405162/94‑1 (MQ=60)
CTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTT < SRR4302544.247811/94‑1 (MQ=60)
CTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTT > SRR4302544.4211605/1‑94 (MQ=60)
TCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTG < SRR4302544.3808496/94‑1 (MQ=60)
AATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCA > SRR4302544.750198/1‑94 (MQ=60)
AATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCA < SRR4302544.3692927/94‑1 (MQ=60)
ATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAG < SRR4302544.2233160/94‑1 (MQ=60)
TGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGG < SRR4302544.645839/94‑1 (MQ=60)
TGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGG < SRR4302544.2954643/94‑1 (MQ=60)
GATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGA > SRR4302544.882727/1‑94 (MQ=60)
GCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCA > SRR4302544.2717817/1‑94 (MQ=60)
GCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCA < SRR4302544.4559032/94‑1 (MQ=60)
CTGGAATCGCTCTTTTAATGCCTCTACAAATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGG < SRR4302544.1778649/94‑1 (MQ=60)
TGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGC > SRR4302544.2224221/1‑94 (MQ=60)
TGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGC < SRR4302544.4114686/94‑1 (MQ=60)
TGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGC < SRR4302544.2215657/94‑1 (MQ=60)
AATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTA > SRR4302544.2459489/1‑94 (MQ=60)
AATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTA > SRR4302544.3998218/1‑94 (MQ=60)
ATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTAT > SRR4302544.1028744/1‑94 (MQ=60)
ATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTAT > SRR4302544.3455980/1‑94 (MQ=60)
CGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGG > SRR4302544.3046204/1‑94 (MQ=60)
TCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGA > SRR4302544.3581927/1‑94 (MQ=60)
TCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGA < SRR4302544.616480/94‑1 (MQ=60)
CTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAG > SRR4302544.784385/1‑94 (MQ=60)
CTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAG < SRR4302544.2792121/94‑1 (MQ=60)
TTAATGCCTCTACACATTTGGCGACGGTAGCCGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCT < SRR4302544.1644795/94‑1 (MQ=60)
ATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTT < SRR4302544.3743096/94‑1 (MQ=60)
TCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACC > SRR4302544.3729421/1‑94 (MQ=60)
CTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCC > SRR4302544.3461169/1‑94 (MQ=60)
CACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCC < SRR4302544.1625883/94‑1 (MQ=60)
ACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCT > SRR4302544.3257959/1‑94 (MQ=60)
CATTTGGCGGCGGTAGCGGGAATTCCCTCTTCTTCGAGGGTTGGGCTGGTATCTTTCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCG < SRR4302544.880893/94‑1 (MQ=60)
CATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCG < SRR4302544.4524302/94‑1 (MQ=60)
ATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGC > SRR4302544.4675210/1‑94 (MQ=60)
TTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAA > SRR4302544.150528/1‑94 (MQ=60)
CGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACC < SRR4302544.202916/94‑1 (MQ=60)
ACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCT < SRR4302544.291704/94‑1 (MQ=60)
GCAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGT < SRR4302544.1485421/94‑1 (MQ=60)
CAATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTA > SRR4302544.4786680/1‑94 (MQ=60)
ATCTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACA > SRR4302544.1711841/1‑94 (MQ=60)
CTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATCCCCCTCCGCAACACCCTTACCGCGGTACACG < SRR4302544.986078/94‑1 (MQ=60)
CTCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACG > SRR4302544.626287/1‑94 (MQ=60)
TCCTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGT > SRR4302544.2569092/1‑94 (MQ=60)
CTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCA < SRR4302544.2336837/94‑1 (MQ=60)
CTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCA > SRR4302544.263515/1‑94 (MQ=60)
CTCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACACCTCCGCAACACCCTTACCGCGGTACACGTCA > SRR4302544.1837596/1‑94 (MQ=60)
TCTTCTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAA > SRR4302544.4391987/1‑94 (MQ=60)
CTTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAA < SRR4302544.2215811/94‑1 (MQ=60)
TTCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAG > SRR4302544.1416476/1‑94 (MQ=60)
TCGAGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGT < SRR4302544.3088736/94‑1 (MQ=60)
AGTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTA > SRR4302544.1936667/1‑94 (MQ=60)
GTGTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTAC > SRR4302544.4576642/1‑94 (MQ=60)
GTGCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGC > SRR4302544.3486681/1‑94 (MQ=60)
GCGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCA > SRR4302544.867253/1‑94 (MQ=60)
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ATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCA > NC_000913/1793575‑1793761
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
