Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,830,747	T→C	L99P (CTG→CCG)	xthA →	exonuclease III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,830,747	0	T	C	100.0%	626.4 / NA	193	L99P (CTG→CCG)	xthA	exonuclease III
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (91/102); total (91/102)

Only 100 of 213 total aligned reads displayed.

CCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACTGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTT  >  NC_000913/1830657‑1830836

ccAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgc                                                                                         >  2:3128679/1‑93 (MQ=255)

ccAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgc                                                                                         >  1:5091522/1‑93 (MQ=255)

ccAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgc                                                                                         <  2:3293310/93‑1 (MQ=255)

ccAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgc                                                                                         >  1:3974659/1‑93 (MQ=255)

ccAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgc                                                                                         <  1:2322018/93‑1 (MQ=255)

  aaaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgctg                                                                                       >  2:4067719/1‑93 (MQ=255)

  aaaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgctg                                                                                       >  1:2472342/1‑93 (MQ=255)

  aaaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgctg                                                                                       <  1:4238861/93‑1 (MQ=255)

  aaaGAGACGCCGATTGCCGTGCGTCGCGGCTTCCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCGccgctg                                                                                       <  2:5676697/93‑1 (MQ=255)

   aaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTgg                                                                                      <  1:883065/93‑1 (MQ=255)

   aaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTgg                                                                                      >  2:29626/1‑93 (MQ=255)

   aaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTgg                                                                                      <  1:2450902/93‑1 (MQ=255)

   aaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTgg                                                                                      <  2:2777912/93‑1 (MQ=255)

   aaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTgg                                                                                      <  1:5526515/93‑1 (MQ=255)

   aaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTgg                                                                                      <  2:2014390/93‑1 (MQ=255)

   aaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTAATATGGCGGAAATCCCCTCACCGCTgg                                                                                      >  1:2158639/1‑93 (MQ=255)

    agagACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTggg                                                                                     <  2:2378388/93‑1 (MQ=255)

     gagaCGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGt                                                                                    <  1:2087874/93‑1 (MQ=255)

     gagaCGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGt                                                                                    >  1:4708539/1‑93 (MQ=255)

     gagaCGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGt                                                                                    >  1:1453022/1‑93 (MQ=255)

      agaCGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTa                                                                                   >  2:3464781/1‑93 (MQ=255)

        aCGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAAt                                                                                 >  2:2824144/1‑93 (MQ=255)

        aCGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAAt                                                                                 >  2:1007329/1‑93 (MQ=255)

         cGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATg                                                                                >  2:5867888/1‑93 (MQ=255)

           ccGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTc                                                                              <  2:4833819/93‑1 (MQ=255)

            cGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTcc                                                                             >  1:6639069/1‑92 (MQ=255)

              aTTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCAcc                                                                           >  2:4530/1‑93 (MQ=255)

                   cGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGAt                                                                      >  1:6612778/1‑93 (MQ=255)

                    gTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATc                                                                     >  2:305531/1‑93 (MQ=255)

                    gTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATc                                                                     >  2:5009346/1‑93 (MQ=255)

                    gTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATc                                                                     <  1:5778193/93‑1 (MQ=255)

                    gTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCAGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATc                                                                     <  1:5048191/93‑1 (MQ=255)

                     tGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCa                                                                    <  1:3907362/93‑1 (MQ=255)

                     tGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCa                                                                    <  1:817739/93‑1 (MQ=255)

                      gCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGATATCCCCTCACCGCTGGGTAATGTCACCGTGATCaa                                                                   <  2:5162411/93‑1 (MQ=255)

                      gCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCaa                                                                   <  2:843163/93‑1 (MQ=255)

                      gCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCaa                                                                   <  1:1553461/93‑1 (MQ=255)

                       cGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAAc                                                                  <  2:5747187/93‑1 (MQ=255)

                         gcgcgGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATAATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACgg                                                                <  1:6050548/92‑1 (MQ=255)

                           gcgGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGtt                                                              <  1:5160227/93‑1 (MQ=255)

                           acgGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGtt                                                              >  2:648079/2‑93 (MQ=255)

                              gCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACt                                                           <  2:867322/93‑1 (MQ=255)

                              gCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACt                                                           >  1:551986/1‑93 (MQ=255)

                               cTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACtt                                                          <  1:3639536/93‑1 (MQ=255)

                               cTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACtt                                                          >  1:3127843/1‑93 (MQ=255)

                               cTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACtt                                                          >  1:3013128/1‑93 (MQ=255)

                                  tCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTccc                                                       <  2:6066851/93‑1 (MQ=255)

                                   cccGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCg                                                      <  1:562506/93‑1 (MQ=255)

                                       gTGACGACGAAGAGGCGCAGCGGCGTATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAgg                                                  <  2:4657517/93‑1 (MQ=255)

                                        tGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAggg                                                 <  2:326654/93‑1 (MQ=255)

                                        tGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAggg                                                 <  1:2051631/93‑1 (MQ=255)

                                          acgacgAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTg                                               <  1:1197890/93‑1 (MQ=255)

                                            gacgaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGaa                                             >  2:3650529/1‑93 (MQ=255)

                                            gacgaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGaa                                             <  1:6324311/93‑1 (MQ=255)

                                              cgaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAg                                           <  2:6307959/93‑1 (MQ=255)

                                                aaGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGcc                                         >  1:4977871/1‑93 (MQ=255)

                                                  gagGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCcgc                                       >  2:4864203/1‑93 (MQ=255)

                                                  gagGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCcgc                                       <  2:4773460/93‑1 (MQ=255)

                                                  gagGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCcgc                                       >  2:6195067/1‑93 (MQ=255)

                                                   agGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCcgcg                                      >  2:2634410/1‑93 (MQ=255)

                                                    ggCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGa                                     >  1:5200918/1‑93 (MQ=255)

                                                    ggCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGa                                     >  1:3484942/1‑93 (MQ=255)

                                                     gcgcAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGAc                                    <  2:5259253/93‑1 (MQ=255)

                                                        cAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCAt                                 >  2:4121612/1‑93 (MQ=255)

                                                           cggcggATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGGGAAAGCCGCGACCATCCg                              >  1:1082959/1‑93 (MQ=255)

                                                             gcggATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGAt                            <  2:1655177/93‑1 (MQ=255)

                                                             gcggATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGAt                            <  1:4538283/93‑1 (MQ=255)

                                                             gcggATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGAt                            <  2:778660/93‑1 (MQ=255)

                                                                  ttattaTGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAAt                       <  2:1077477/93‑1 (MQ=255)

                                                                   tattatGGCGAAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAAtt                      <  1:3439675/93‑1 (MQ=255)

                                                                     ttatGGCGGAAATCCCCTCGCCGCTGGGTAATGTCACCGTGATCAAGGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTcc                    <  1:4484601/93‑1 (MQ=255)

                                                                     ttatGGCGGAAATCCCCTCACCGCTGGTTAATGTCACCGTGATCATCGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTcc                    <  2:4956366/93‑1 (MQ=255)

                                                                     ttatGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCTGCAGGGTGAAAGGCGCGACCATCCGATAAAATTcc                    >  2:5945418/1‑93 (MQ=255)

                                                                     ttatGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTcc                    >  1:6446214/1‑93 (MQ=255)

                                                                       atGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCg                  <  1:1841892/93‑1 (MQ=255)

                                                                         ggCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGc                >  1:6732799/1‑93 (MQ=255)

                                                                          gCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCa               <  2:5524387/93‑1 (MQ=255)

                                                                           cGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCaa              >  1:6195903/1‑93 (MQ=255)

                                                                             gAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCaaaa            <  1:2893082/93‑1 (MQ=255)

                                                                             gAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCaaaa            <  2:5466480/93‑1 (MQ=255)

                                                                              aaaTCCCCTCTCCTCTTGGTAATGTCACCGTAATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAg           <  2:1719523/93‑1 (MQ=255)

                                                                              aaaTCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGACAGCCGCGACCATCCGATAAAATTCCCGGCAAAAg           >  2:41970/1‑93 (MQ=255)

                                                                               aaTCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAgc          >  1:5983125/1‑93 (MQ=255)

                                                                                aTCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGGTAAAATTCCCGGCAAAAgcg         >  2:4436550/1‑93 (MQ=255)

                                                                                aTCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAgcg         >  1:4449960/1‑93 (MQ=255)

                                                                                  ccccTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCa       >  1:1274541/1‑93 (MQ=255)

                                                                                   cccTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAg      <  1:217743/93‑1 (MQ=255)

                                                                                   cccTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAg      <  2:4346631/93‑1 (MQ=255)

                                                                                   cccTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAg      <  2:388082/93‑1 (MQ=255)

                                                                                    ccTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGt     <  2:2059829/93‑1 (MQ=255)

                                                                                     cTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGtt    <  1:2190497/93‑1 (MQ=255)

                                                                                     cTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGtt    <  1:2660876/93‑1 (MQ=255)

                                                                                     cTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGtt    <  2:3416590/93‑1 (MQ=255)

                                                                                     cTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGtt    <  1:622372/93‑1 (MQ=255)

                                                                                     cTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCACGGCAAAAGCGCAgct    >  1:2684898/1‑91 (MQ=255)

                                                                                      tCACCGCTGGGTAATGTCCCCGTGATCACCGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGttt   <  1:7502/93‑1 (MQ=255)

                                                                                      tCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGttt   <  1:196311/93‑1 (MQ=255)

                                                                                      tCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGttt   >  1:1845341/1‑93 (MQ=255)

                                                                                      tCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGttt   <  2:1535496/93‑1 (MQ=255)

                                                                                       cACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGtttt  >  2:1510684/1‑93 (MQ=255)

CCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACTGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTT  >  NC_000913/1830657‑1830836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACTGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTATCA  >  NC_000913/1830654‑1830840

TGACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACC                                                                                               <  SRR4302536.3990144/94‑1 (MQ=60)

TGACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACC                                                                                               >  SRR4302536.5117817/1‑94 (MQ=60)

TGACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACC                                                                                               <  SRR4302536.3295244/94‑1 (MQ=60)

 GACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGCAATCCCCTCACCG                                                                                              >  SRR4302536.1842456/1‑94 (MQ=60)

  ACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGC                                                                                             >  SRR4302536.4092638/1‑94 (MQ=60)

  ACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGC                                                                                             >  SRR4302536.5243788/1‑94 (MQ=60)

   CCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCT                                                                                            <  SRR4302536.2392473/94‑1 (MQ=60)

    CAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTG                                                                                           >  SRR4302536.2546983/1‑94 (MQ=60)

     AAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGG                                                                                          >  SRR4302536.6533968/1‑94 (MQ=60)

     AAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGG                                                                                          >  SRR4302536.2085849/1‑94 (MQ=60)

     AAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGG                                                                                          <  SRR4302536.4365062/94‑1 (MQ=60)

     AAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTAATATGGCGGAAATCCCCTCACCGCTGG                                                                                          >  SRR4302536.2223554/1‑94 (MQ=60)

      AAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGG                                                                                         <  SRR4302536.3105475/94‑1 (MQ=60)

      AAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGG                                                                                         <  SRR4302536.5691299/94‑1 (MQ=60)

      AAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGG                                                                                         <  SRR4302536.2524940/94‑1 (MQ=60)

      AAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGG                                                                                         <  SRR4302536.909052/94‑1 (MQ=60)

       AGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGT                                                                                        >  SRR4302536.4850154/1‑94 (MQ=60)

       AGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGT                                                                                        >  SRR4302536.1496060/1‑94 (MQ=60)

        GAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTA                                                                                       <  SRR4302536.2150716/94‑1 (MQ=60)

              CCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCC                                                                                 >  SRR4302536.6836502/1‑94 (MQ=60)

                 ATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCG                                                                              >  SRR4302536.2255301/1‑94 (MQ=60)

                  TTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGT                                                                             <  SRR4302536.2117129/94‑1 (MQ=60)

                     CCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGAT                                                                          >  SRR4302536.4045031/1‑94 (MQ=60)

                     CCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGAT                                                                          >  SRR4302536.6809408/1‑94 (MQ=60)

                      CGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATC                                                                         <  SRR4302536.5711676/94‑1 (MQ=60)

                       GTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCA                                                                        <  SRR4302536.5950137/94‑1 (MQ=60)

                       GTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCAGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCA                                                                        <  SRR4302536.5199466/94‑1 (MQ=60)

                        TGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAA                                                                       <  SRR4302536.4023491/94‑1 (MQ=60)

                        TGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAA                                                                       <  SRR4302536.841780/94‑1 (MQ=60)

                         GCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAAC                                                                      <  SRR4302536.1599105/94‑1 (MQ=60)

                           GTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGG                                                                    >  SRR4302536.1279418/1‑94 (MQ=60)

                            TCGCGGCTCTCCCGGTGACGACGAAGAGGCGCAGCGGCTGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGACACCGTGATCAACGGT                                                                   <  SRR4302536.3385213/94‑1 (MQ=60)

                            GCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATAATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGT                                                                   <  SRR4302536.6231016/94‑1 (MQ=60)

                             CGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTT                                                                  <  SRR4302536.776649/94‑1 (MQ=60)

                              GCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTA                                                                 <  SRR4302536.5314195/94‑1 (MQ=60)

                              GCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTA                                                                 <  SRR4302536.387748/94‑1 (MQ=60)

                                GGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACT                                                               >  SRR4302536.566055/1‑94 (MQ=60)

                                GGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACT                                                               >  SRR4302536.2007426/1‑94 (MQ=60)

                                GGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACT                                                               >  SRR4302536.6475867/1‑94 (MQ=60)

                                GGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGGAATGTCACCGTGCTCAACGGGTACT                                                               >  SRR4302536.1017059/1‑94 (MQ=60)

                                 GCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTT                                                              >  SRR4302536.3219270/1‑94 (MQ=60)

                                 GCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTT                                                              >  SRR4302536.3101702/1‑94 (MQ=60)

                                  CTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTC                                                             <  SRR4302536.1747196/94‑1 (MQ=60)

                                  CTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTC                                                             <  SRR4302536.3748364/94‑1 (MQ=60)

                                   TTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCC                                                            <  SRR4302536.5172608/94‑1 (MQ=60)

                                   TTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGGAATGTCACCGTGATCAATGGGTACTTCC                                                            >  SRR4302536.3557450/1‑94 (MQ=60)

                                    TTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCC                                                           <  SRR4302536.681853/94‑1 (MQ=60)

                                    TTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCC                                                           <  SRR4302536.4850720/94‑1 (MQ=60)

                                      CCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGC                                                         <  SRR4302536.576835/94‑1 (MQ=60)

                                        CGGTGACGAGGGATAGGCGCAGCGGCGAATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAG                                                       <  SRR4302536.4999098/94‑1 (MQ=60)

                                        CGGTGACGACGAAGAGGCGCAACGGCGGAGTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCTCCGTGATCAACGGTTACTTCCCGCAG                                                       <  SRR4302536.2539261/94‑1 (MQ=60)

                                         GGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGG                                                      <  SRR4302536.5337806/94‑1 (MQ=60)

                                           TGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGT                                                    <  SRR4302536.2113425/94‑1 (MQ=60)

                                             ACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGA                                                  <  SRR4302536.1233892/94‑1 (MQ=60)

                                             ACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGA                                                  >  SRR4302536.1127268/1‑94 (MQ=60)

                                               GACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAA                                                <  SRR4302536.6512683/94‑1 (MQ=60)

                                               GACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAA                                                >  SRR4302536.2227743/1‑94 (MQ=60)

                                                 CGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGC                                              >  SRR4302536.471925/1‑94 (MQ=60)

                                                  GAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCC                                             >  SRR4302536.1898368/1‑94 (MQ=60)

                                                  GAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCC                                             >  SRR4302536.5127359/1‑94 (MQ=60)

                                                   AAGAGGCGCAGCGGCGGATTATTATGGCGGGAATACCCTCACCGCTGGGTAATGTCACCGcggtgaaccggtacttcccgctgggggagatgcg                                            >  SRR4302536.2123268/1‑60 (MQ=60)

                                                   AAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCG                                            >  SRR4302536.396308/1‑94 (MQ=60)

                                                   AAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCG                                            >  SRR4302536.6383742/1‑94 (MQ=60)

                                                   AAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCG                                            >  SRR4302536.6834326/1‑94 (MQ=60)

                                                   AAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGAGAAAGCCG                                            >  SRR4302536.4628725/1‑94 (MQ=60)

                                                    AGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGC                                           <  SRR4302536.2710726/94‑1 (MQ=60)

                                                    AGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGC                                           >  SRR4302536.3607875/1‑94 (MQ=60)

                                                     GAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCG                                          >  SRR4302536.2267481/1‑94 (MQ=60)

                                                      AGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGA                                         >  SRR4302536.5355974/1‑94 (MQ=60)

                                                      AGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGA                                         >  SRR4302536.3588875/1‑94 (MQ=60)

                                                        GCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGGAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGgcacc                                       >  SRR4302536.1652293/1‑89 (MQ=60)

                                                           CAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATC                                    <  SRR4302536.2659522/94‑1 (MQ=60)

                                                            AGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCC                                   <  SRR4302536.1464733/94‑1 (MQ=60)

                                                            AGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCC                                   <  SRR4302536.888103/94‑1 (MQ=60)

                                                             GCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCG                                  <  SRR4302536.5945573/94‑1 (MQ=60)

                                                             GCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGGGAAAGCCGCGACCATCCG                                  >  SRR4302536.1115385/1‑94 (MQ=60)

                                                                GCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATA                               <  SRR4302536.4674361/94‑1 (MQ=60)

                                                                 CGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAA                              >  SRR4302536.1571707/1‑94 (MQ=60)

                                                                   GATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAA                            >  SRR4302536.6775303/1‑94 (MQ=60)

                                                                   GATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAA                            <  SRR4302536.6004698/94‑1 (MQ=60)

                                                                      TATTATGGCGAAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTT                         <  SRR4302536.3542111/94‑1 (MQ=60)

                                                                       ATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCC                        >  SRR4302536.6638804/1‑94 (MQ=60)

                                                                       ATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCC                        >  SRR4302536.5237875/1‑94 (MQ=60)

                                                                        TTATGGCGGAAATCCCCTCGCCGCTGGGTAATGTCACCGTGATCAAGGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCC                       <  SRR4302536.4619295/94‑1 (MQ=60)

                                                                        TTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCC                       <  SRR4302536.291149/94‑1 (MQ=60)

                                                                          ATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGG                     <  SRR4302536.1897406/94‑1 (MQ=60)

                                                                          ATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGG                     >  SRR4302536.2441639/1‑94 (MQ=60)

                                                                           TGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGCAAGCCGCGACCATCCGATAAAATTCCCGGC                    >  SRR4302536.6933013/1‑94 (MQ=60)

                                                                           TGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGC                    >  SRR4302536.6933014/1‑94 (MQ=60)

                                                                             GCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAA                  >  SRR4302536.6380454/1‑94 (MQ=60)

                                                                              CGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAA                 <  SRR4302536.5684921/94‑1 (MQ=60)

                                                                                GAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAG               <  SRR4302536.2978404/94‑1 (MQ=60)

                                                                                GAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAG               <  SRR4302536.2037829/94‑1 (MQ=60)

                                                                                GAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAG               <  SRR4302536.2761165/94‑1 (MQ=60)

                                                                                GAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAG               >  SRR4302536.4597486/1‑94 (MQ=60)

                                                                                 AAATCCCCTCCCCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCGGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGC              <  SRR4302536.5368765/94‑1 (MQ=60)

                                                                                 AAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGC              <  SRR4302536.5835270/94‑1 (MQ=60)

                                                                                 AAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGC              >  SRR4302536.6161518/1‑94 (MQ=60)

                                                                                  AATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCG             >  SRR4302536.4583607/1‑94 (MQ=60)

                                                                                  AATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTCACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCG             <  SRR4302536.5280592/94‑1 (MQ=60)

                                                                                    TCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCA           <  SRR4302536.6263604/94‑1 (MQ=60)

                                                                                    TCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCA           <  SRR4302536.728963/94‑1 (MQ=60)

                                                                                    TCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCA           >  SRR4302536.1312704/1‑94 (MQ=60)

                                                                                     CCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAG          <  SRR4302536.3473914/94‑1 (MQ=60)

                                                                                      CCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGT         <  SRR4302536.223519/94‑1 (MQ=60)

                                                                                      CCCTCACCGCTGGGGAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGT         >  SRR4302536.5682935/1‑94 (MQ=60)

                                                                                       CCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCACGGCAAAAGCGCAGCT        >  SRR4302536.2765088/1‑94 (MQ=60)

                                                                                        CTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTT       <  SRR4302536.2740506/94‑1 (MQ=60)

                                                                                        CTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTT       <  SRR4302536.2256564/94‑1 (MQ=60)

                                                                                        CTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTT       <  SRR4302536.640853/94‑1 (MQ=60)

                                                                                        CTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTT       >  SRR4302536.1900937/1‑94 (MQ=60)

                                                                                         TCACCGCTGGGTAATGTCCCCGTGATCACCGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTT      <  SRR4302536.7707/94‑1 (MQ=60)

                                                                                         TCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTT      >  SRR4302536.3020609/1‑94 (MQ=60)

                                                                                         TCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTT      <  SRR4302536.6224732/94‑1 (MQ=60)

                                                                                         TCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTT      <  SRR4302536.201473/94‑1 (MQ=60)

                                                                                         TCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTT      >  SRR4302536.4278154/1‑94 (MQ=60)

                                                                                         TCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTT      <  SRR4302536.2174001/94‑1 (MQ=60)

                                                                                         TCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTT      >  SRR4302536.4418666/1‑94 (MQ=60)

                                                                                          CACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTA     >  SRR4302536.5595805/1‑94 (MQ=60)

                                                                                           ACCGCTGGGTAATGTCACCGTGATCAACGGCTACTTCCCGCAGCGTGAAAGCCGCGACCCTCCCATAAAATTACCGGCAAAAGAGCAGTCTTAT    >  SRR4302536.3748987/1‑94 (MQ=60)

                                                                                             CGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTATCA  >  SRR4302536.3894680/1‑94 (MQ=60)

TGACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACTGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTATCA  >  NC_000913/1830654‑1830840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`