Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,837,903	A→G	K138R (AAA→AGA)	b1757 →	putative thiosulfate sulfur transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,837,903	0	A	G	100.0%	795.3 / NA	239	K138R (AAA→AGA)	b1757	putative thiosulfate sulfur transferase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (125/114); total (125/114)

Only 100 of 244 total aligned reads displayed.

TCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAAACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACT  >  NC_000913/1837813‑1837992

tCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGAc                                                                                         <  1:4820988/93‑1 (MQ=255)

tCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGAc                                                                                         <  1:5542444/93‑1 (MQ=255)

tCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGAc                                                                                         <  2:2167053/93‑1 (MQ=255)

tCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGAc                                                                                         >  2:2657857/1‑93 (MQ=255)

  gACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTg                                                                                       <  1:1076578/93‑1 (MQ=255)

  gACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTg                                                                                       >  1:4631279/1‑93 (MQ=255)

  gACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTg                                                                                       <  2:1710097/93‑1 (MQ=255)

   aCGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGc                                                                                      <  2:2367704/93‑1 (MQ=255)

   aCGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGc                                                                                      <  1:5451800/93‑1 (MQ=255)

   aCGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGc                                                                                      >  1:3737800/1‑93 (MQ=255)

    cGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGcc                                                                                     >  1:4199710/1‑93 (MQ=255)

    cGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGcc                                                                                     >  2:1271327/1‑93 (MQ=255)

       cGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCa                                                                                  <  2:3255565/93‑1 (MQ=255)

       cGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCa                                                                                  <  1:63578/93‑1 (MQ=255)

         tCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCAtt                                                                                <  1:5708212/93‑1 (MQ=255)

         tCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAACGAACCTTCCCGTCTGCAACGACTGCCGCAtt                                                                                >  1:2419348/1‑93 (MQ=255)

           aaaaCGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCAtttt                                                                              <  1:1625938/93‑1 (MQ=255)

              aCGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGag                                                                           >  2:581653/1‑93 (MQ=255)

              aCGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGag                                                                           >  1:782010/1‑93 (MQ=255)

                  gACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGagcagc                                                                       <  2:4091189/93‑1 (MQ=255)

                  gACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGagcagc                                                                       >  1:4352039/1‑93 (MQ=255)

                   aCTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCt                                                                      >  2:6298488/1‑93 (MQ=255)

                    cTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTg                                                                     <  2:4234633/93‑1 (MQ=255)

                    cTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTg                                                                     <  2:2931232/93‑1 (MQ=255)

                      gCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGt                                                                   <  1:1687039/93‑1 (MQ=255)

                        aaaaaaCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGttt                                                                 <  1:5294707/93‑1 (MQ=255)

                        aaaaaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGttt                                                                 <  1:4512754/93‑1 (MQ=255)

                         aaaaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTa                                                                >  1:3932877/1‑93 (MQ=255)

                          aaaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTAt                                                               >  1:1929449/1‑93 (MQ=255)

                          aaaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTAt                                                               >  2:911636/1‑93 (MQ=255)

                          aaaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTAt                                                               >  2:4189738/1‑93 (MQ=255)

                           aaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATc                                                              <  1:1840629/93‑1 (MQ=255)

                            aGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATcc                                                             <  1:3438628/93‑1 (MQ=255)

                            aGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATcc                                                             <  1:2546442/93‑1 (MQ=255)

                            aGCAGGTTTAACACATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATcc                                                             <  2:4323787/93‑1 (MQ=255)

                              cAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGc                                                           <  1:1156624/93‑1 (MQ=255)

                                  tttAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATg                                                       >  2:4169521/1‑93 (MQ=255)

                                  tttAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATg                                                       <  1:2966370/93‑1 (MQ=255)

                                  tttAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATg                                                       <  1:6643458/93‑1 (MQ=255)

                                  tttAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATg                                                       <  2:494680/93‑1 (MQ=255)

                                    tAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGc                                                     <  2:860421/93‑1 (MQ=255)

                                     aaCGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCt                                                    >  2:5647084/1‑93 (MQ=255)

                                     aaCGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCt                                                    >  2:1339330/1‑93 (MQ=255)

                                     aaCGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCt                                                    >  2:5067888/1‑93 (MQ=255)

                                        gCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCa                                                 >  2:3958884/1‑93 (MQ=255)

                                        gCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCa                                                 >  2:6243698/1‑93 (MQ=255)

                                        gCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCa                                                 >  2:191814/1‑93 (MQ=255)

                                          atatCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACg                                               >  1:6310449/1‑93 (MQ=255)

                                          atatCTCCATCCTGAGTGACACGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACg                                               >  2:2509964/1‑93 (MQ=255)

                                           tatCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGa                                              >  1:362467/1‑93 (MQ=255)

                                            atCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGAc                                             >  2:165656/1‑93 (MQ=255)

                                            atCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGAc                                             >  2:1057409/1‑93 (MQ=255)

                                             tctcCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGAcc                                            >  2:4858276/1‑93 (MQ=255)

                                             tctcCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGAcc                                            <  1:1337407/93‑1 (MQ=255)

                                              ctcCATCCTGAGTGACGCGCTAGGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCt                                           <  1:694845/93‑1 (MQ=255)

                                              ctcCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCt                                           >  1:2210594/1‑93 (MQ=255)

                                              ctcCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCt                                           <  2:4528560/93‑1 (MQ=255)

                                               tcCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTg                                          >  2:2840473/1‑93 (MQ=255)

                                                ccATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGc                                         >  2:6444915/1‑93 (MQ=255)

                                                ccATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGc                                         >  2:5417141/1‑93 (MQ=255)

                                                  aTCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGcaa                                       >  1:5628529/1‑93 (MQ=255)

                                                     cTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGcaacaa                                    >  1:4144174/1‑93 (MQ=255)

                                                       gAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAgg                                  >  2:6551633/1‑93 (MQ=255)

                                                       gAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAgg                                  >  2:4831469/1‑93 (MQ=255)

                                                        aGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGt                                 <  1:1485427/93‑1 (MQ=255)

                                                        aGTCACGCGCTAAGCGAACGTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGt                                 <  1:406930/93‑1 (MQ=255)

                                                         gTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTa                                <  2:3342813/93‑1 (MQ=255)

                                                         gTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTa                                >  1:4379679/1‑93 (MQ=255)

                                                         gTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTa                                <  1:3180474/93‑1 (MQ=255)

                                                           gACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTaaa                              <  2:5965340/93‑1 (MQ=255)

                                                              gcgcTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAagag                           >  1:4902226/1‑93 (MQ=255)

                                                               cgcTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAgg                          >  1:6689637/1‑93 (MQ=255)

                                                               cgcTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAgg                          <  2:1243405/93‑1 (MQ=255)

                                                                 cTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGtt                        >  1:2688596/1‑93 (MQ=255)

                                                                  tAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTa                       <  2:6097698/93‑1 (MQ=255)

                                                                  tAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTa                       >  1:2857632/1‑93 (MQ=255)

                                                                  tAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTa                       >  1:952161/1‑93 (MQ=255)

                                                                  tAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTa                       <  2:464854/93‑1 (MQ=255)

                                                                  tAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTa                       >  1:3339/1‑93 (MQ=255)

                                                                   aaGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTAc                      <  1:4992678/93‑1 (MQ=255)

                                                                   aaGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTAc                      >  2:366086/1‑93 (MQ=255)

                                                                    aGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACg                     <  2:5212611/93‑1 (MQ=255)

                                                                    aGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACg                     <  2:4474485/93‑1 (MQ=255)

                                                                    aGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACg                     <  2:6168266/93‑1 (MQ=255)

                                                                        aaCCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGa                 >  1:1349425/1‑93 (MQ=255)

                                                                            ttCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAAcc             >  2:2330613/1‑93 (MQ=255)

                                                                            ttCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAAcc             <  2:4966942/93‑1 (MQ=255)

                                                                            ttCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAAcc             >  2:318348/1‑93 (MQ=255)

                                                                             tCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCt            >  2:5254834/1‑93 (MQ=255)

                                                                              cccGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAAAGGCTGCACGACCTGCAACAAGGTGAAGAGGTTACGGCGAAACCTg           <  2:753964/93‑1 (MQ=255)

                                                                                  tCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCgg       >  2:3753283/1‑93 (MQ=255)

                                                                                  tCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCgg       >  1:3145156/1‑93 (MQ=255)

                                                                                   cTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGt      >  1:1307385/1‑93 (MQ=255)

                                                                                    tGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTg     <  2:5905648/93‑1 (MQ=255)

                                                                                    tGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTg     <  1:619681/93‑1 (MQ=255)

                                                                                     gCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGa    >  1:2177084/1‑93 (MQ=255)

                                                                                     gCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGa    >  2:6691936/1‑93 (MQ=255)

                                                                                      cAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGAc   <  2:1771564/93‑1 (MQ=255)

                                                                                      cAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGAc   >  1:4523231/1‑93 (MQ=255)

                                                                                       aaagaCTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACt  >  1:3559331/1‑93 (MQ=255)

TCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAAACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACT  >  NC_000913/1837813‑1837992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAAACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACTGG  >  NC_000913/1837810‑1837994

ATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAG                                                                                             <  SRR4302536.2894757/94‑1 (MQ=60)

ATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAG                                                                                             <  SRR4302536.5546051/94‑1 (MQ=60)

ATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAG                                                                                             <  SRR4302536.3608746/94‑1 (MQ=60)

 TGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGA                                                                                            >  SRR4302536.3559414/1‑94 (MQ=60)

   TCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACT                                                                                          <  SRR4302536.5707605/94‑1 (MQ=60)

   TCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACT                                                                                          <  SRR4302536.3012336/94‑1 (MQ=60)

   TCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACT                                                                                          <  SRR4302536.4966068/94‑1 (MQ=60)

   TCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACT                                                                                          <  SRR4302536.4729626/94‑1 (MQ=60)

   TCGACGCCGCCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCGGCAAAGACT                                                                                          <  SRR4302536.6736336/94‑1 (MQ=60)

    CGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTG                                                                                         >  SRR4302536.4770450/1‑94 (MQ=60)

    CGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTG                                                                                         <  SRR4302536.4139609/94‑1 (MQ=60)

     GACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGC                                                                                        <  SRR4302536.1108807/94‑1 (MQ=60)

     GACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGC                                                                                        >  SRR4302536.3849507/1‑94 (MQ=60)

     GACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGC                                                                                        <  SRR4302536.1358137/94‑1 (MQ=60)

     GACGCCGTCAAAACGCGACTGCAAAAA‑CAGGGTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAAACCTCCCCTCTGCAAAGACTGCC                                                                                       >  SRR4302536.4755259/1‑94 (MQ=60)

      ACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCC                                                                                       <  SRR4302536.5614870/94‑1 (MQ=60)

      ACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCC                                                                                       >  SRR4302536.4324562/1‑94 (MQ=60)

       CGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCG                                                                                      <  SRR4302536.4064133/94‑1 (MQ=60)

       CGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCG                                                                                      >  SRR4302536.1407497/1‑94 (MQ=60)

       CGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCG                                                                                      <  SRR4302536.6403489/94‑1 (MQ=60)

         CCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCA                                                                                    >  SRR4302536.4521375/1‑94 (MQ=60)

          CGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCAT                                                                                   <  SRR4302536.65319/94‑1 (MQ=60)

          CGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCAT                                                                                   >  SRR4302536.5746138/1‑94 (MQ=60)

           GTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATT                                                                                  >  SRR4302536.4381975/1‑94 (MQ=60)

           GTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAACGAACCTTCCCGTCTGCAACGACTGCCGCATT                                                                                  >  SRR4302536.2492515/1‑94 (MQ=60)

            TCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTT                                                                                 <  SRR4302536.5877966/94‑1 (MQ=60)

             CAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTT                                                                                <  SRR4302536.1555019/94‑1 (MQ=60)

             CAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTT                                                                                >  SRR4302536.1381299/1‑94 (MQ=60)

              AAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTG                                                                               >  SRR4302536.2870907/1‑94 (MQ=60)

              AAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTG                                                                               >  SRR4302536.3162858/1‑94 (MQ=60)

              AAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTG                                                                               <  SRR4302536.1673274/94‑1 (MQ=60)

               AAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGA                                                                              >  SRR4302536.4346125/1‑94 (MQ=60)

               AAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGA                                                                              >  SRR4302536.6923810/1‑94 (MQ=60)

                AACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAG                                                                             >  SRR4302536.804911/1‑94 (MQ=60)

                  CGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCA                                                                           <  SRR4302536.813318/94‑1 (MQ=60)

                  CGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCA                                                                           >  SRR4302536.5678156/1‑94 (MQ=60)

                    CGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGC                                                                         >  SRR4302536.4482245/1‑94 (MQ=60)

                      ACTGCAACACGCAGGTTAAACGCATATCTACATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTG                                                                       <  SRR4302536.2356735/94‑1 (MQ=60)

                      ACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTG                                                                       <  SRR4302536.2691454/94‑1 (MQ=60)

                       CTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGG                                                                      >  SRR4302536.4294494/1‑94 (MQ=60)

                       CTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGG                                                                      <  SRR4302536.3827231/94‑1 (MQ=60)

                         GCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTT                                                                    <  SRR4302536.1735922/94‑1 (MQ=60)

                         GCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTT                                                                    >  SRR4302536.833826/1‑94 (MQ=60)

                         GCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTT                                                                    >  SRR4302536.2692301/1‑94 (MQ=60)

                          CAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTT                                                                   <  SRR4302536.1728747/94‑1 (MQ=60)

                           AAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTA                                                                  >  SRR4302536.4049724/1‑94 (MQ=60)

                           AAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTA                                                                  <  SRR4302536.2173662/94‑1 (MQ=60)

                           AAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTA                                                                  <  SRR4302536.4648122/94‑1 (MQ=60)

                           AAAAAACAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTA                                                                  <  SRR4302536.5452581/94‑1 (MQ=60)

                            AAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTAT                                                                 >  SRR4302536.1987493/1‑94 (MQ=60)

                            AAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTAT                                                                 >  SRR4302536.6924931/1‑94 (MQ=60)

                            AAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGAAGAGCTAAGCGAAACTTCCCGTCTGCAAAGACTGCCGCATTTTGCGCAGCTGGTTTAT                                                                 >  SRR4302536.371971/1‑94 (MQ=60)

                             AAAGCAGCTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATC                                                                <  SRR4302536.6884096/94‑1 (MQ=60)

                              AAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCC                                                               <  SRR4302536.1896120/94‑1 (MQ=60)

                               agtttgtgTAACGCATAACCCCATCCGGAGTGACGCGCTAATCAAACCTACCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCG                                                              <  SRR4302536.6898951/86‑1 (MQ=60)

                               AGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCG                                                              >  SRR4302536.2174303/1‑94 (MQ=60)

                               AGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCG                                                              <  SRR4302536.2623141/94‑1 (MQ=60)

                               AGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCA                                                              <  SRR4302536.3541026/94‑1 (MQ=60)

                                 CAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCA                                                            <  SRR4302536.1191437/94‑1 (MQ=60)

                                     TTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGG                                                        <  SRR4302536.3053741/94‑1 (MQ=60)

                                     TTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGG                                                        <  SRR4302536.6840990/94‑1 (MQ=60)

                                        AACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTG                                                     <  SRR4302536.1685060/94‑1 (MQ=60)

                                         ACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGC                                                    <  SRR4302536.4880512/94‑1 (MQ=60)

                                          acgataattccctcctaagtgacgcagTAAGCAAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCA                                                   <  SRR4302536.1840447/67‑1 (MQ=60)

                                          CGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCA                                                   <  SRR4302536.5060840/94‑1 (MQ=60)

                                          CGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCA                                                   >  SRR4302536.3594401/1‑94 (MQ=60)

                                            CATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACG                                                 >  SRR4302536.6498428/1‑94 (MQ=60)

                                             ATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGA                                                >  SRR4302536.372055/1‑94 (MQ=60)

                                               ATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACC                                              >  SRR4302536.116702/1‑94 (MQ=60)

                                               ATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACC                                              >  SRR4302536.5795041/1‑94 (MQ=60)

                                               ATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACC                                              >  SRR4302536.4505147/1‑94 (MQ=60)

                                               ATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACC                                              >  SRR4302536.2544679/1‑94 (MQ=60)

                                                TCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCT                                             >  SRR4302536.2277354/1‑94 (MQ=60)

                                                TCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCT                                             <  SRR4302536.1377303/94‑1 (MQ=60)

                                                TCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCT                                             <  SRR4302536.471167/94‑1 (MQ=60)

                                                ACTCCACCCTGGGTGACGCGCTACGCGAACCTTCCCGTCTGCAAAGACTGCCACATTTTGAGCAGTTGGTTTATCCGCAATGGCTGCACGATCT                                             <  SRR4302536.5444838/94‑1 (MQ=60)

                                                 CTCCATCCTGAGTGACGCGCTAGGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTG                                            <  SRR4302536.715147/94‑1 (MQ=60)

                                                 CTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTG                                            >  SRR4302536.5333431/1‑94 (MQ=60)

                                                    CATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAA                                         <  SRR4302536.736386/94‑1 (MQ=60)

                                                    CATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAA                                         >  SRR4302536.5795736/1‑94 (MQ=60)

                                                       CCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAA                                      >  SRR4302536.4267103/1‑94 (MQ=60)

                                                       CCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAA                                      >  SRR4302536.1408034/1‑94 (MQ=60)

                                                       CCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAA                                      >  SRR4302536.2243751/1‑94 (MQ=60)

                                                        CTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAG                                     >  SRR4302536.3944501/1‑94 (MQ=60)

                                                         TGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGG                                    >  SRR4302536.4223137/1‑94 (MQ=60)

                                                          GAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGT                                   <  SRR4302536.3630729/94‑1 (MQ=60)

                                                          GAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGA                                   >  SRR4302536.6214888/1‑94 (MQ=60)

                                                           AGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTA                                  >  SRR4302536.4510436/1‑94 (MQ=60)

                                                           AGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTA                                  <  SRR4302536.1529308/94‑1 (MQ=60)

                                                           AGTCACGCGCTAAGCGAACGTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTA                                  <  SRR4302536.417669/94‑1 (MQ=60)

                                                            GTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAA                                 <  SRR4302536.3273723/94‑1 (MQ=60)

                                                              GACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAG                               <  SRR4302536.3304200/94‑1 (MQ=60)

                                                              GACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAG                               <  SRR4302536.4632368/94‑1 (MQ=60)

                                                               ACGCGCTAAGCGACCCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGA                              <  SRR4302536.6164006/94‑1 (MQ=60)

                                                               ACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGA                              <  SRR4302536.3501432/94‑1 (MQ=60)

                                                                CGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAG                             >  SRR4302536.5049642/1‑94 (MQ=60)

                                                                 GCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGG                            >  SRR4302536.6888323/1‑94 (MQ=60)

                                                                 GCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGG                            <  SRR4302536.5455744/94‑1 (MQ=60)

                                                                 GCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGG                            >  SRR4302536.1323340/1‑94 (MQ=60)

                                                                 CCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCTCAATGGCTGCACGACCTGCAACAAGGTAAAGAGG                            <  SRR4302536.2383635/94‑1 (MQ=60)

                                                                  CGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGT                           >  SRR4302536.5064341/1‑94 (MQ=60)

                                                                   GCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTT                          <  SRR4302536.4657408/94‑1 (MQ=60)

                                                                   GCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTT                          >  SRR4302536.2768868/1‑94 (MQ=60)

                                                                    CTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTA                         >  SRR4302536.980302/1‑94 (MQ=60)

                                                                    CTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTA                         >  SRR4302536.3430/1‑94 (MQ=60)

                                                                    CTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTA                         >  SRR4302536.2942113/1‑94 (MQ=60)

                                                                      AAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACG                       <  SRR4302536.2996991/94‑1 (MQ=60)

                                                                      AAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACG                       <  SRR4302536.5142526/94‑1 (MQ=60)

                                                                        GCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGACGTTACGGC                     <  SRR4302536.6801606/94‑1 (MQ=60)

                                                                         CGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCG                    <  SRR4302536.1365226/94‑1 (MQ=60)

                                                                          GAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGA                   >  SRR4302536.1389673/1‑94 (MQ=60)

                                                                          GAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGA                   <  SRR4302536.5003760/94‑1 (MQ=60)

                                                                             CCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATCGCTGTACGACCTGCAACAAGTGAAAGAGGTTACCACGAAAC                >  SRR4302536.5495841/1‑94 (MQ=60)

                                                                              CTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACC               <  SRR4302536.582532/94‑1 (MQ=60)

                                                                                  CCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCC           <  SRR4302536.1911550/94‑1 (MQ=60)

                                                                                   CGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCG          >  SRR4302536.3802903/1‑94 (MQ=60)

                                                                                    GTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGG         >  SRR4302536.3237243/1‑94 (MQ=60)

                                                                                     TCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGT        >  SRR4302536.6518326/1‑94 (MQ=60)

                                                                                     TCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGT        >  SRR4302536.1346417/1‑94 (MQ=60)

                                                                                       TGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGA      <  SRR4302536.638096/94‑1 (MQ=60)

                                                                                       TGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGA      >  SRR4302536.3323641/1‑94 (MQ=60)

                                                                                       TGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGA      >  SRR4302536.3245934/1‑94 (MQ=60)

                                                                                       TGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGA      >  SRR4302536.2242680/1‑94 (MQ=60)

                                                                                        GCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGAC     >  SRR4302536.4658865/1‑94 (MQ=60)

                                                                                         CAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACT    >  SRR4302536.3665757/1‑94 (MQ=60)

                                                                                         CAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACT    >  SRR4302536.1844783/1‑94 (MQ=60)

                                                                                          AAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACTG   >  SRR4302536.1528549/1‑94 (MQ=60)

                                                                                          AAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACTG   >  SRR4302536.4069466/1‑94 (MQ=60)

                                                                                           AAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACTGG  >  SRR4302536.1817023/1‑94 (MQ=60)

ATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAAACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACTGG  >  NC_000913/1837810‑1837994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`