Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,839,484 A→G intergenic (‑51/‑30) b1758 ← / → b1759 putative cytochrome oxidase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,839,4840AG99.6% 737.3 / ‑5.1 228intergenic (‑51/‑30)b1758/b1759putative cytochrome oxidase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (126/100);  total (127/101)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.65e-01

Only 100 of 230 total aligned reads displayed.

GTTTAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCATTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTCGCG  >  NC_000913/1839394‑1839573
                                                                                          |                                                                                         
gTTTAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGtt                                                                                         <  2:4257550/93‑1 (MQ=255)
gTTTAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGtt                                                                                         >  2:3404217/1‑93 (MQ=255)
 tttAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGttt                                                                                        >  2:6656686/1‑93 (MQ=255)
  ttAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGtttt                                                                                       >  2:6327550/1‑93 (MQ=255)
  ttAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGtttt                                                                                       <  1:4727177/93‑1 (MQ=255)
    aaTCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTc                                                                                     <  2:4169533/93‑1 (MQ=255)
    aaTCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTc                                                                                     <  1:682231/93‑1 (MQ=255)
     aTCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCg                                                                                    >  2:1866161/1‑93 (MQ=255)
      tCCTGGGATGAAGCTGGCGGCATAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGc                                                                                   >  1:77416/1‑93 (MQ=255)
      tCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCgt                                                                                   >  1:6289202/1‑92 (MQ=255)
      tCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGc                                                                                   <  1:107986/93‑1 (MQ=255)
        cGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCtt                                                                                 <  1:484076/93‑1 (MQ=255)
         ggggATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTa                                                                                <  2:2377264/93‑1 (MQ=255)
          gggATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTAt                                                                               >  1:2718271/1‑93 (MQ=255)
          gggATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTAt                                                                               <  1:6325817/93‑1 (MQ=255)
               gAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGcc                                                                          <  1:6049606/93‑1 (MQ=255)
                aaGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGccc                                                                         <  2:5970157/93‑1 (MQ=255)
                 aGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCg                                                                        >  1:6677380/1‑93 (MQ=255)
                   aTGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCgtg                                                                      >  2:1058009/1‑93 (MQ=255)
                      gCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCgtgtgt                                                                   <  2:4615149/93‑1 (MQ=255)
                       cGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTa                                                                  <  2:577137/93‑1 (MQ=255)
                       cGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTa                                                                  >  2:5633359/1‑93 (MQ=255)
                         gTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAAt                                                                <  1:6091817/93‑1 (MQ=255)
                         gTCTAGCACAAGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAAt                                                                >  1:4073179/1‑93 (MQ=255)
                          tCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAAtt                                                               <  1:5474440/93‑1 (MQ=255)
                          tCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAAtt                                                               <  1:282091/93‑1 (MQ=255)
                             aGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTAt                                                            >  1:1360168/1‑93 (MQ=255)
                             aGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTAt                                                            <  1:1247408/93‑1 (MQ=255)
                             aGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTAt                                                            >  2:3134630/1‑93 (MQ=255)
                             aGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTAt                                                            >  2:2450660/1‑93 (MQ=255)
                              gCACAGGCACTCCTTAAATATAGAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATg                                                           <  1:5813973/93‑1 (MQ=255)
                              gCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATg                                                           >  1:567018/1‑93 (MQ=255)
                              gCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATg                                                           >  1:3678831/1‑93 (MQ=255)
                              gCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATg                                                           <  1:5928445/93‑1 (MQ=255)
                                 caGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGaaa                                                        >  2:1029301/1‑93 (MQ=255)
                                  aGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGaaaa                                                       <  2:2212676/93‑1 (MQ=255)
                                  aGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGaaaa                                                       <  2:374188/93‑1 (MQ=255)
                                  aGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGaaaa                                                       >  1:6428058/1‑93 (MQ=255)
                                  aGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGaaaa                                                       >  1:6586076/1‑93 (MQ=255)
                                  aGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGCCTTTTTTCGCTTATCTCCCCGTGTGTAATTTATGaaaa                                                       <  1:1755207/93‑1 (MQ=255)
                                    gCACTCGTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATg                                                     <  1:3323247/93‑1 (MQ=255)
                                     cACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGa                                                    <  1:2347067/93‑1 (MQ=255)
                                     cACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGa                                                    <  2:489992/93‑1 (MQ=255)
                                      aCTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGAt                                                   >  1:1290743/1‑93 (MQ=255)
                                      aCTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGAt                                                   <  1:2630197/93‑1 (MQ=255)
                                      aCTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGAt                                                   >  2:6051680/1‑93 (MQ=255)
                                       cTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGAtt                                                  <  1:1165503/93‑1 (MQ=255)
                                       cTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGAtt                                                  >  1:2903266/1‑93 (MQ=255)
                                        tCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTg                                                 >  2:5454741/1‑93 (MQ=255)
                                        tCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTg                                                 <  1:654272/93‑1 (MQ=255)
                                         ccTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGa                                                >  2:4682417/1‑93 (MQ=255)
                                         ccTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGa                                                <  2:1239612/93‑1 (MQ=255)
                                         ccTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAAGGATTGa                                                >  1:4923615/1‑93 (MQ=255)
                                          cTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGaa                                               >  1:3138466/1‑93 (MQ=255)
                                          cTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGaa                                               <  2:712079/93‑1 (MQ=255)
                                            tAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAgt                                             <  1:1874803/93‑1 (MQ=255)
                                            tAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAgt                                             <  2:5093093/93‑1 (MQ=255)
                                            tAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAgt                                             <  1:6199295/93‑1 (MQ=255)
                                            tAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAgt                                             <  2:2727925/93‑1 (MQ=255)
                                            tAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAgt                                             >  1:2989643/1‑93 (MQ=255)
                                              aaTATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAgttg                                           >  1:2389748/1‑93 (MQ=255)
                                               atatAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAgttgt                                          >  2:5394954/1‑93 (MQ=255)
                                                tataAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAgttgtt                                         <  2:5485017/93‑1 (MQ=255)
                                                  taAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTgc                                       >  1:1045114/1‑93 (MQ=255)
                                                  taAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTgc                                       <  1:3816130/93‑1 (MQ=255)
                                                  taAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTgc                                       >  1:4422718/1‑93 (MQ=255)
                                                   aaaGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGCTgcc                                      >  2:3666969/1‑93 (MQ=255)
                                                    aaGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTgccg                                     <  2:1119269/93‑1 (MQ=255)
                                                     aGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTgccgc                                    >  1:4571311/1‑93 (MQ=255)
                                                     aGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTgccgc                                    >  2:2809351/1‑93 (MQ=255)
                                                      gCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTgccgcc                                   <  1:6052995/93‑1 (MQ=255)
                                                        cTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCcat                                 <  2:4668226/93‑1 (MQ=255)
                                                         tttCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCcatc                                >  2:6551728/1‑93 (MQ=255)
                                                         tttCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCcatc                                >  1:4198345/1‑93 (MQ=255)
                                                            cTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCAtt                             <  2:756688/93‑1 (MQ=255)
                                                             tGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTg                            >  2:200181/1‑93 (MQ=255)
                                                             tGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTg                            >  2:1453971/1‑93 (MQ=255)
                                                             tGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTg                            >  2:5151486/1‑93 (MQ=255)
                                                              gATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGa                           >  2:3847198/1‑93 (MQ=255)
                                                              gATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGa                           <  2:5006765/93‑1 (MQ=255)
                                                                   aGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTg                      <  1:2223170/93‑1 (MQ=255)
                                                                    gCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGa                     >  1:1111689/1‑93 (MQ=255)
                                                                       aaaGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATgg                  >  1:3904002/3‑93 (MQ=255)
                                                                       aCAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATgg                  >  2:6462308/1‑93 (MQ=255)
                                                                        cAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGc                 >  1:2284395/1‑93 (MQ=255)
                                                                          gagCGGATATTATGGCGTTTTTAGCTTATCTGCCCGTGAGTAATTTATGAACATGATTGAAGATGTTGCCGCCATCATTGAACGTGATGGCaa               >  2:3939516/3‑93 (MQ=255)
                                                                            gCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCaaaa             <  1:4330638/93‑1 (MQ=255)
                                                                             cGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAAt            <  2:2266992/93‑1 (MQ=255)
                                                                              ggATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAAtt           >  2:6508761/1‑93 (MQ=255)
                                                                               gATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAAttt          >  2:4779420/1‑93 (MQ=255)
                                                                               gATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAAttt          >  2:2020025/1‑93 (MQ=255)
                                                                               gATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAAttt          <  2:3106504/93‑1 (MQ=255)
                                                                                atatTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAAtttt         <  1:5595210/93‑1 (MQ=255)
                                                                                 tattatGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTa        <  1:5190531/93‑1 (MQ=255)
                                                                                  attatGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTAc       <  1:2339905/93‑1 (MQ=255)
                                                                                  attatGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTAc       <  1:4251116/93‑1 (MQ=255)
                                                                                   ttatGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACt      <  2:2645577/93‑1 (MQ=255)
                                                                                     atGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTcg    <  1:3479358/93‑1 (MQ=255)
                                                                                      tGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTcgc   <  2:6296509/93‑1 (MQ=255)
                                                                                       ggCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTcgcg  >  2:5579573/1‑93 (MQ=255)
                                                                                          |                                                                                         
GTTTAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCATTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTCGCG  >  NC_000913/1839394‑1839573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCATTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTCGCGCAA  >  NC_000913/1839396‑1839576
                                                                                        |                                                                                            
TTAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTT                                                                                         >  SRR4302536.6881247/1‑94 (MQ=60)
TTAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTT                                                                                         <  SRR4302536.4869408/94‑1 (MQ=60)
TTAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTT                                                                                         >  SRR4302536.1397281/1‑94 (MQ=60)
  AATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCG                                                                                       >  SRR4302536.6126331/1‑94 (MQ=60)
  AATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCG                                                                                       <  SRR4302536.702222/94‑1 (MQ=60)
   ATCCTGGGATGAAGCTGGCGGCATAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGC                                                                                      >  SRR4302536.79492/1‑94 (MQ=60)
   ATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGT                                                                                      >  SRR4302536.6476616/1‑94 (MQ=60)
    TCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCT                                                                                     <  SRR4302536.110857/94‑1 (MQ=60)
     CCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTT                                                                                    >  SRR4302536.1319438/1‑94 (MQ=60)
      CGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTA                                                                                   >  SRR4302536.909639/1‑94 (MQ=60)
      CGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTA                                                                                   <  SRR4302536.496646/94‑1 (MQ=60)
       GGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTAT                                                                                  >  SRR4302536.2799356/1‑94 (MQ=60)
       GGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTAT                                                                                  <  SRR4302536.6890025/94‑1 (MQ=60)
        GGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATC                                                                                 <  SRR4302536.6514228/94‑1 (MQ=60)
            TGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCC                                                                             <  SRR4302536.4403818/94‑1 (MQ=60)
             GAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCC                                                                            <  SRR4302536.6230042/94‑1 (MQ=60)
              AAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCG                                                                           >  SRR4302536.5511419/1‑94 (MQ=60)
              AAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCG                                                                           >  SRR4302536.6875769/1‑94 (MQ=60)
               AGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGT                                                                          >  SRR4302536.2962229/1‑94 (MQ=60)
               AGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGT                                                                          >  SRR4302536.6375175/1‑94 (MQ=60)
               AGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCATTTTTCGCTTATCTGCCCGT                                                                          >  SRR4302536.5045913/1‑94 (MQ=60)
                 ATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGT                                                                        <  SRR4302536.6131747/94‑1 (MQ=60)
                  TGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTCTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGGGTG                                                                       <  SRR4302536.3025094/94‑1 (MQ=60)
                   GGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGT                                                                      <  SRR4302536.4250260/94‑1 (MQ=60)
                    GCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTA                                                                     >  SRR4302536.5105821/1‑94 (MQ=60)
                    GCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTA                                                                     <  SRR4302536.4537114/94‑1 (MQ=60)
                     CGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAA                                                                    >  SRR4302536.4332183/1‑94 (MQ=60)
                     CGGTCTAGCACAGGCACTCCTTAAAGATAAAGCCTTTCTTATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAA                                                                    <  SRR4302536.6855534/94‑1 (MQ=60)
                      GGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAAT                                                                   >  SRR4302536.6235953/1‑94 (MQ=60)
                      GGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAAT                                                                   >  SRR4302536.6230548/1‑94 (MQ=60)
                      GGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAAT                                                                   <  SRR4302536.4589301/94‑1 (MQ=60)
                      GGTCTAGCACAAGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAAT                                                                   >  SRR4302536.4193898/1‑94 (MQ=60)
                       GTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATT                                                                  <  SRR4302536.6273480/94‑1 (MQ=60)
                       GTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATT                                                                  >  SRR4302536.1681317/1‑94 (MQ=60)
                        TCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTT                                                                 <  SRR4302536.289597/94‑1 (MQ=60)
                        TCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTT                                                                 <  SRR4302536.5637966/94‑1 (MQ=60)
                         CTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTA                                                                >  SRR4302536.2407064/1‑94 (MQ=60)
                          TAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTAT                                                               >  SRR4302536.1400707/1‑94 (MQ=60)
                           AGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATG                                                              >  SRR4302536.3788802/1‑94 (MQ=60)
                           AGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATG                                                              >  SRR4302536.581455/1‑94 (MQ=60)
                           AGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATG                                                              <  SRR4302536.1284852/94‑1 (MQ=60)
                           AGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATG                                                              >  SRR4302536.76909/1‑94 (MQ=60)
                            GCACAGGCACTCCTTAAATATAGAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGA                                                             <  SRR4302536.5987166/94‑1 (MQ=60)
                            GCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGA                                                             >  SRR4302536.6448495/1‑94 (MQ=60)
                            GCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGA                                                             <  SRR4302536.6843149/94‑1 (MQ=60)
                            GCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGA                                                             <  SRR4302536.6105047/94‑1 (MQ=60)
                              ACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAA                                                           >  SRR4302536.1246632/1‑94 (MQ=60)
                               CAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAA                                                          >  SRR4302536.6782019/1‑94 (MQ=60)
                               CAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAA                                                          >  SRR4302536.6697169/1‑94 (MQ=60)
                               CAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAA                                                          >  SRR4302536.6620168/1‑94 (MQ=60)
                                AGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAAT                                                         <  SRR4302536.5135403/94‑1 (MQ=60)
                                AGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGCCTTTTTTCGCTTATCTCCCCGTGTGTAATTTATGAAAAT                                                         <  SRR4302536.1807350/94‑1 (MQ=60)
                                  GCACTCGTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGA                                                       <  SRR4302536.3421554/94‑1 (MQ=60)
                                   CACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGAT                                                      >  SRR4302536.1329339/1‑94 (MQ=60)
                                   CACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGAT                                                      <  SRR4302536.205685/94‑1 (MQ=60)
                                   CACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGAT                                                      <  SRR4302536.2418229/94‑1 (MQ=60)
                                   CACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGAT                                                      >  SRR4302536.2979358/1‑94 (MQ=60)
                                   CACTCCTTAAAAATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGAT                                                      <  SRR4302536.269259/94‑1 (MQ=60)
                                    ACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATT                                                     >  SRR4302536.2988946/1‑94 (MQ=60)
                                    ACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATT                                                     <  SRR4302536.1668111/94‑1 (MQ=60)
                                    ACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATT                                                     <  SRR4302536.4697885/94‑1 (MQ=60)
                                    ACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATT                                                     >  SRR4302536.2299220/1‑94 (MQ=60)
                                    ACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATT                                                     <  SRR4302536.2709056/94‑1 (MQ=60)
                                    ACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATT                                                     <  SRR4302536.4158025/94‑1 (MQ=60)
                                     CTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTG                                                    <  SRR4302536.2487194/94‑1 (MQ=60)
                                     CTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTG                                                    >  SRR4302536.5834065/1‑94 (MQ=60)
                                     CTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTG                                                    >  SRR4302536.1126079/1‑94 (MQ=60)
                                     CTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTG                                                    >  SRR4302536.6001675/1‑94 (MQ=60)
                                     CTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTG                                                    <  SRR4302536.4876628/94‑1 (MQ=60)
                                     CTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTG                                                    <  SRR4302536.1200584/94‑1 (MQ=60)
                                      TCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGA                                                   >  SRR4302536.5773225/1‑94 (MQ=60)
                                      TCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGA                                                   <  SRR4302536.673453/94‑1 (MQ=60)
                                      TCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAAGGATTGA                                                   >  SRR4302536.5071563/1‑94 (MQ=60)
                                       CCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAA                                                  >  SRR4302536.3230323/1‑94 (MQ=60)
                                         TTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGT                                                >  SRR4302536.3077610/1‑94 (MQ=60)
                                          TAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTT                                               <  SRR4302536.6383950/94‑1 (MQ=60)
                                          TAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTT                                               <  SRR4302536.1931224/94‑1 (MQ=60)
                                           AAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTG                                              >  SRR4302536.2462092/1‑94 (MQ=60)
                                           AAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTG                                              >  SRR4302536.6525262/1‑94 (MQ=60)
                                            AATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGT                                             >  SRR4302536.1152265/1‑94 (MQ=60)
                                              TATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTG                                           <  SRR4302536.3300190/94‑1 (MQ=60)
                                               ATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGC                                          >  SRR4302536.6641625/1‑94 (MQ=60)
                                               ATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGC                                          >  SRR4302536.4555173/1‑94 (MQ=60)
                                               ATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGC                                          >  SRR4302536.1230775/1‑94 (MQ=60)
                                               ATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGC                                          >  SRR4302536.1076203/1‑94 (MQ=60)
                                                TAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCC                                         <  SRR4302536.566924/94‑1 (MQ=60)
                                                TAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCC                                         <  SRR4302536.3929855/94‑1 (MQ=60)
                                                  AAGCCTTTCTGATTGAGCAACAGTGCTGATATGATGGCGTTTTTCGCTTATCCGCCCGTGTGTAATTTGTGAAAATCCTTGAAGTTTTTGCCGC                                       <  SRR4302536.2358355/94‑1 (MQ=60)
                                                  AAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGC                                       >  SRR4302536.4708501/1‑94 (MQ=60)
                                                  AAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGC                                       <  SRR4302536.3818722/94‑1 (MQ=60)
                                                   AGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCC                                      >  SRR4302536.3982868/1‑94 (MQ=60)
                                                   AGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCC                                      >  SRR4302536.2872872/1‑94 (MQ=60)
                                                   AGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGCGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCG                                      >  SRR4302536.3943971/1‑94 (MQ=60)
                                                    GCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCA                                     <  SRR4302536.6233561/94‑1 (MQ=60)
                                                     CCTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCAT                                    <  SRR4302536.1096868/94‑1 (MQ=60)
                                                      CTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATC                                   >  SRR4302536.4323288/1‑94 (MQ=60)
                                                      CTTTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATC                                   >  SRR4302536.4323131/1‑94 (MQ=60)
                                                        TTCTGATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCAT                                 >  SRR4302536.6512378/1‑94 (MQ=60)
                                                            GATTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAA                             >  SRR4302536.3519447/1‑94 (MQ=60)
                                                              TTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACG                           >  SRR4302536.1896347/1‑94 (MQ=60)
                                                              TTGAGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACG                           <  SRR4302536.24104/94‑1 (MQ=60)
                                                                 AGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGA                        >  SRR4302536.1145046/1‑94 (MQ=60)
                                                                 AGCAACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGA                        <  SRR4302536.2290415/94‑1 (MQ=60)
                                                                    AACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGG                     >  SRR4302536.6777590/1‑94 (MQ=60)
                                                                    AAAAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGG                     >  SRR4302536.4020043/1‑94 (MQ=60)
                                                                     ACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGC                    >  SRR4302536.3293923/1‑94 (MQ=60)
                                                                     ACAGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGC                    >  SRR4302536.2353661/1‑94 (MQ=60)
                                                                       AGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAA                  >  SRR4302536.6469535/1‑94 (MQ=60)
                                                                       AGTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAA                  >  SRR4302536.4804599/1‑94 (MQ=60)
                                                                        GTGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAA                 <  SRR4302536.22924/94‑1 (MQ=60)
                                                                         TGCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAA                >  SRR4302536.5947708/1‑94 (MQ=60)
                                                                          GCGGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAAT               <  SRR4302536.4460351/94‑1 (MQ=60)
                                                                            GGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTT             >  SRR4302536.3780414/1‑94 (MQ=60)
                                                                            GGATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTT             >  SRR4302536.2755924/1‑94 (MQ=60)
                                                                              ATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTA           <  SRR4302536.5761558/94‑1 (MQ=60)
                                                                              ATATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTA           >  SRR4302536.3080610/1‑94 (MQ=60)
                                                                               TATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTAC          <  SRR4302536.5345316/94‑1 (MQ=60)
                                                                                ATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACT         >  SRR4302536.243203/1‑94 (MQ=60)
                                                                                ATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACT         <  SRR4302536.2410887/94‑1 (MQ=60)
                                                                                ATTATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACT         <  SRR4302536.4377760/94‑1 (MQ=60)
                                                                                   ATGGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTCGC      <  SRR4302536.3583079/94‑1 (MQ=60)
                                                                                     GGCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTCGCGC    >  SRR4302536.3212538/1‑94 (MQ=60)
                                                                                      GCGTTTTTCGCTTATCTGCCTGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTGTACTCGCGCA   >  SRR4302536.6739474/1‑94 (MQ=60)
                                                                                      GCGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTCGCGCA   >  SRR4302536.3362021/1‑94 (MQ=60)
                                                                                       CGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTCGCGCAA  <  SRR4302536.2126907/94‑1 (MQ=60)
                                                                                       CGTTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTCGCGCAA  >  SRR4302536.546903/1‑94 (MQ=60)
                                                                                        |                                                                                            
TTAATCCGGGGATGAAGATGGCGGTCTAGCACAGGCACTCCTTAAATATAAAGCCTTTCTGATTGAGCAACAGTGCGGATATTATGGCATTTTTCGCTTATCTGCCCGTGTGTAATTTATGAAAATGATTGAAGTTGTTGCCGCCATCATTGAACGTGATGGCAAAATTTTACTCGCGCAA  >  NC_000913/1839396‑1839576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑