Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,839,782	A→G	H90R (CAC→CGC)	b1759 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,839,782	0	A	G	100.0%	654.3 / NA	201	H90R (CAC→CGC)	b1759	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (106/95); total (106/95)

Only 100 of 211 total aligned reads displayed.

AAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTC  >  NC_000913/1839692‑1839871

aaGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCcgcg                                                                                         >  1:4668372/1‑93 (MQ=255)

aaGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCcgcg                                                                                         >  2:4352459/1‑93 (MQ=255)

  gCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCggg                                                                                       >  1:6299481/1‑93 (MQ=255)

  gCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCggg                                                                                       <  2:5351676/93‑1 (MQ=255)

   cAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGa                                                                                      <  1:2288690/93‑1 (MQ=255)

    aaCTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGAc                                                                                     <  1:4633145/93‑1 (MQ=255)

    aaCTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGAc                                                                                     <  1:1901169/93‑1 (MQ=255)

    aaCTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGAGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGAc                                                                                     <  1:2498909/93‑1 (MQ=255)

     aCTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACg                                                                                    >  1:1314479/1‑93 (MQ=255)

     aCTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACg                                                                                    >  1:5742493/1‑93 (MQ=255)

       tgtgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGtt                                                                                  >  2:3926010/1‑93 (MQ=255)

       tgtgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGtt                                                                                  <  2:2894015/93‑1 (MQ=255)

        gtgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTa                                                                                 >  2:2548880/1‑93 (MQ=255)

        gtgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTa                                                                                 <  2:236907/93‑1 (MQ=255)

        gtgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGGTa                                                                                 >  1:4566884/1‑93 (MQ=255)

         tgtgTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTAc                                                                                <  1:206606/90‑1 (MQ=255)

         tgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTAc                                                                                <  1:5094380/93‑1 (MQ=255)

         tgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTAc                                                                                <  1:2638204/93‑1 (MQ=255)

         tgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTAc                                                                                <  1:6145549/93‑1 (MQ=255)

          gggTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCAACTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACa                                                                               <  2:4992475/93‑1 (MQ=255)

           ggTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAg                                                                              >  1:547081/1‑93 (MQ=255)

            gTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAgg                                                                             >  1:1030365/1‑93 (MQ=255)

            gTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAgg                                                                             >  2:4480340/1‑93 (MQ=255)

               aaTATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGcac                                                                          >  1:6499393/1‑93 (MQ=255)

                atatGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGcaca                                                                         >  2:1087654/1‑93 (MQ=255)

                atatGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGcaca                                                                         <  2:2989643/93‑1 (MQ=255)

                 tatGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACAt                                                                        >  2:701685/1‑93 (MQ=255)

                  atGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATg                                                                       <  1:4023478/93‑1 (MQ=255)

                   tGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGa                                                                      >  1:1522565/1‑93 (MQ=255)

                     ttGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAAc                                                                    >  1:1233578/1‑93 (MQ=255)

                     ttGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAAc                                                                    <  1:4529759/93‑1 (MQ=255)

                     ttGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAAc                                                                    <  1:4455766/93‑1 (MQ=255)

                      tGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACa                                                                   <  1:5394954/93‑1 (MQ=255)

                         cagccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCa                                                                <  1:2903161/93‑1 (MQ=255)

                         cagccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCa                                                                <  1:5177293/93‑1 (MQ=255)

                          agccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAg                                                               <  2:6055324/93‑1 (MQ=255)

                          agccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAg                                                               >  2:2166551/1‑93 (MQ=255)

                          agccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAg                                                               >  1:722488/1‑93 (MQ=255)

                             caTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGgcg                                                            >  1:1352414/1‑93 (MQ=255)

                              aTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGgcgc                                                           <  1:6311639/93‑1 (MQ=255)

                                cAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctg                                                         <  1:6109795/93‑1 (MQ=255)

                                   cGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtc                                                      <  1:4241190/93‑1 (MQ=255)

                                   cGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtc                                                      <  1:3326567/93‑1 (MQ=255)

                                   cGAGAAGTTTCGGGGAGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtc                                                      <  2:5454774/93‑1 (MQ=255)

                                    gagaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtct                                                     <  1:4075407/93‑1 (MQ=255)

                                    gagaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtct                                                     <  2:5828038/93‑1 (MQ=255)

                                    gagaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtct                                                     >  1:2773013/1‑93 (MQ=255)

                                    gagaAGTTTCGGGGCGGACTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtct                                                     <  1:6474986/93‑1 (MQ=255)

                                     agaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATAAGGCGctggtctg                                                    >  1:1687845/1‑93 (MQ=255)

                                      gaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctgg                                                   >  1:3846111/1‑93 (MQ=255)

                                      gaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctgg                                                   <  1:1398840/93‑1 (MQ=255)

                                      gaAGTTTCGGGGCGCATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctgg                                                   <  2:25820/93‑1 (MQ=255)

                                       aaGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctggt                                                  <  1:2550228/93‑1 (MQ=255)

                                       aaGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctggg                                                  >  2:1277694/1‑92 (MQ=255)

                                         gTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGc                                                >  1:2887837/1‑93 (MQ=255)

                                            tCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCa                                             <  1:5579573/93‑1 (MQ=255)

                                             cGGGGCAGATTATCCATCTTCATGCCTGGCACCTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCAc                                            <  1:2150961/93‑1 (MQ=255)

                                               gggCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCt                                          <  2:5189395/93‑1 (MQ=255)

                                                ggCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTg                                         >  1:74689/1‑93 (MQ=255)

                                                  cGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGaa                                       >  1:6669727/1‑93 (MQ=255)

                                                  cGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGaa                                       <  1:3565708/93‑1 (MQ=255)

                                                  cGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGaa                                       <  2:2790051/93‑1 (MQ=255)

                                                  cGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGaa                                       <  1:3038176/93‑1 (MQ=255)

                                                   ggATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGCGCTCACCTGAag                                      >  2:2292930/1‑93 (MQ=255)

                                                    gATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAaga                                     <  2:533276/93‑1 (MQ=255)

                                                    gATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAaga                                     <  2:191113/93‑1 (MQ=255)

                                                     aTTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAagag                                    >  1:4885086/1‑93 (MQ=255)

                                                     aTTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAagag                                    <  2:3474979/93‑1 (MQ=255)

                                                      ttATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAgg                                   <  2:1410133/93‑1 (MQ=255)

                                                       tATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGgc                                  >  2:3920280/1‑93 (MQ=255)

                                                        aTCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGGCTGGTGCTCACCTGAAGAGgcg                                 >  1:2361059/1‑93 (MQ=255)

                                                             tCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCa                            >  1:3810822/1‑93 (MQ=255)

                                                             tCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCa                            >  2:3325010/1‑93 (MQ=255)

                                                              cTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCaa                           <  1:6256065/93‑1 (MQ=255)

                                                               ttCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAat                          >  2:3417140/1‑93 (MQ=255)

                                                                tCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAata                         <  2:3712015/93‑1 (MQ=255)

                                                                 cATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAatat                        >  2:5616905/1‑93 (MQ=255)

                                                                  aTGTCTGGCACGTCCCCGACTTCCGCCGGACTTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATc                       <  1:990843/93‑1 (MQ=255)

                                                                  aTGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATc                       >  2:898450/1‑93 (MQ=255)

                                                                   tGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGACGCGCTGCAATATcc                      >  2:804326/1‑93 (MQ=255)

                                                                    gCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCg                     >  2:6610629/1‑93 (MQ=255)

                                                                    gCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCg                     >  1:6534146/1‑93 (MQ=255)

                                                                     ccTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGc                    <  1:5979956/93‑1 (MQ=255)

                                                                      cTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCt                   >  1:5785162/1‑93 (MQ=255)

                                                                      cTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCt                   <  2:6248635/93‑1 (MQ=255)

                                                                      cTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCt                   <  2:5274000/93‑1 (MQ=255)

                                                                      cTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCt                   <  1:1387147/93‑1 (MQ=255)

                                                                      cTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCt                   <  2:5538460/93‑1 (MQ=255)

                                                                       tGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGGCTGGTGCTCACCTGAAGAGGCGCTGCAATATTCGCTg                  >  1:3134777/1‑93 (MQ=255)

                                                                        ggCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTgg                 >  1:497446/1‑93 (MQ=255)

                                                                        ggCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTgg                 >  2:3778124/1‑93 (MQ=255)

                                                                          cACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGcc               >  1:6589566/1‑93 (MQ=255)

                                                                            cGTGCCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGcccc             <  1:2517326/93‑1 (MQ=255)

                                                                            cGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGcccc             <  2:6705775/93‑1 (MQ=255)

                                                                             gtccccGCCTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCct            <  2:1799955/90‑1 (MQ=255)

                                                                               aCCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctgc          <  2:411028/93‑1 (MQ=255)

                                                                               aCCCGACTTCCGCGGGACGTTACACGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctgc          <  1:5337546/93‑1 (MQ=255)

                                                                               aCCCGACTTCCGCGGGACGGTACAGGAACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctgg          >  1:1753435/1‑92 (MQ=255)

                                                                                     cTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACAt    <  1:3095421/93‑1 (MQ=255)

                                                                                     cTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACAt    >  2:6306105/1‑93 (MQ=255)

AAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTC  >  NC_000913/1839692‑1839871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCAT  >  NC_000913/1839689‑1839874

TCGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCG                                                                                              <  SRR4302536.3688862/94‑1 (MQ=60)

 CGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGC                                                                                             <  SRR4302536.5862355/94‑1 (MQ=60)

  GAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCG                                                                                            >  SRR4302536.4808744/1‑94 (MQ=60)

  GAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCG                                                                                            >  SRR4302536.5184525/1‑94 (MQ=60)

   AAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGATTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGG                                                                                           >  SRR4302536.6592458/1‑94 (MQ=60)

    AGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGG                                                                                          >  SRR4302536.6487141/1‑94 (MQ=60)

    AGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGG                                                                                          >  SRR4302536.2624481/1‑94 (MQ=60)

     GCAACTGTGGGGGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGA                                                                                         <  SRR4302536.4233301/94‑1 (MQ=60)

      CAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGAC                                                                                        <  SRR4302536.2358102/94‑1 (MQ=60)

      CAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGAC                                                                                        >  SRR4302536.3932660/1‑94 (MQ=60)

       AACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACG                                                                                       >  SRR4302536.5913314/1‑94 (MQ=60)

       AACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACG                                                                                       <  SRR4302536.4772384/94‑1 (MQ=60)

       AACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACG                                                                                       <  SRR4302536.1958415/94‑1 (MQ=60)

       AACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACG                                                                                       >  SRR4302536.1353722/1‑94 (MQ=60)

       AACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGAGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACG                                                                                       <  SRR4302536.2574273/94‑1 (MQ=60)

          TGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTA                                                                                    <  SRR4302536.3973335/94‑1 (MQ=60)

          TGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGGTA                                                                                    >  SRR4302536.4703926/1‑94 (MQ=60)

           GTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTAC                                                                                   >  SRR4302536.4117867/1‑94 (MQ=60)

           GTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTAC                                                                                   <  SRR4302536.478187/94‑1 (MQ=60)

           GTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGGTAC                                                                                   >  SRR4302536.1761966/1‑94 (MQ=60)

            TGTGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACA                                                                                  <  SRR4302536.212054/94‑1 (MQ=60)

            TGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACA                                                                                  <  SRR4302536.2717298/94‑1 (MQ=60)

            TGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACA                                                                                  <  SRR4302536.6328650/94‑1 (MQ=60)

            TGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACA                                                                                  <  SRR4302536.5246726/94‑1 (MQ=60)

            TGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACA                                                                                  <  SRR4302536.673330/94‑1 (MQ=60)

             GGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAG                                                                                 >  SRR4302536.561039/1‑94 (MQ=60)

             GGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAG                                                                                 <  SRR4302536.765580/94‑1 (MQ=60)

              GGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGG                                                                                >  SRR4302536.1060893/1‑94 (MQ=60)

               GTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGC                                                                               <  SRR4302536.3211412/94‑1 (MQ=60)

                 GAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCAC                                                                             <  SRR4302536.2109923/94‑1 (MQ=60)

                 GAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCAC                                                                             >  SRR4302536.6693124/1‑94 (MQ=60)

                  AATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACA                                                                            >  SRR4302536.6312317/1‑94 (MQ=60)

                  AATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACA                                                                            <  SRR4302536.6678864/94‑1 (MQ=60)

                    TATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATG                                                                          <  SRR4302536.372987/94‑1 (MQ=60)

                     ATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGA                                                                         >  SRR4302536.1567372/1‑94 (MQ=60)

                     ATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGA                                                                         <  SRR4302536.4142841/94‑1 (MQ=60)

                     ATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGA                                                                         >  SRR4302536.2900331/1‑94 (MQ=60)

                      TGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAA                                                                        <  SRR4302536.5955323/94‑1 (MQ=60)

                      TGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAA                                                                        >  SRR4302536.2706055/1‑94 (MQ=60)

                       GTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAAC                                                                       >  SRR4302536.1270616/1‑94 (MQ=60)

                        TTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACA                                                                      <  SRR4302536.4665554/94‑1 (MQ=60)

                        TTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACA                                                                      <  SRR4302536.4589634/94‑1 (MQ=60)

                        GTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGCCTTCCGCGGGACGTTACAGGCACATGAACA                                                                      <  SRR4302536.4665555/94‑1 (MQ=60)

                         TGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGTCGTTACAGGCACATGAACAT                                                                     <  SRR4302536.6702728/94‑1 (MQ=60)

                         TGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACAT                                                                     <  SRR4302536.5556042/94‑1 (MQ=60)

                           CCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCA                                                                   <  SRR4302536.1584311/94‑1 (MQ=60)

                           CCAGCCATCAGCGAGAAGTTTCGGGGCCGATTATCCCTCTTCATGCCTGGCGACTACCCGAATTCCGCGGGACGTTACAGGCACATGAACATCA                                                                   <  SRR4302536.4166275/94‑1 (MQ=60)

                            CAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAG                                                                  >  SRR4302536.1301908/1‑94 (MQ=60)

                            CAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAG                                                                  >  SRR4302536.743630/1‑94 (MQ=60)

                            CAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAG                                                                  <  SRR4302536.5331742/94‑1 (MQ=60)

                            CAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAG                                                                  <  SRR4302536.2988839/94‑1 (MQ=60)

                             AGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGG                                                                 <  SRR4302536.315513/94‑1 (MQ=60)

                               CCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCG                                                               <  SRR4302536.2549940/94‑1 (MQ=60)

                               CCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCG                                                               <  SRR4302536.6156786/94‑1 (MQ=60)

                               CCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCG                                                               >  SRR4302536.1392733/1‑94 (MQ=60)

                                 ATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCT                                                             >  SRR4302536.6161120/1‑94 (MQ=60)

                                 ATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCT                                                             <  SRR4302536.6499643/94‑1 (MQ=60)

                                  TCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTG                                                            <  SRR4302536.6784675/94‑1 (MQ=60)

                                  TCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTG                                                            >  SRR4302536.2575058/1‑94 (MQ=60)

                                  TCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTG                                                            <  SRR4302536.1144089/94‑1 (MQ=60)

                                   CAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGG                                                           >  SRR4302536.1927951/1‑94 (MQ=60)

                                   CAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGG                                                           <  SRR4302536.6291927/94‑1 (MQ=60)

                                    AGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGT                                                          <  SRR4302536.2071996/94‑1 (MQ=60)

                                      CGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCT                                                        >  SRR4302536.2855438/1‑94 (MQ=60)

                                      CGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCT                                                        >  SRR4302536.1424351/1‑94 (MQ=60)

                                      CGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCT                                                        <  SRR4302536.4367462/94‑1 (MQ=60)

                                      CGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCT                                                        <  SRR4302536.3425002/94‑1 (MQ=60)

                                       GAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTG                                                       <  SRR4302536.4196190/94‑1 (MQ=60)

                                       GAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATAAGGCGCTGGTCTG                                                       >  SRR4302536.1736745/1‑94 (MQ=60)

                                       GAGAAGTTTCGGGGCGGACTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTG                                                       <  SRR4302536.6668207/94‑1 (MQ=60)

                                        AGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGG                                                      >  SRR4302536.3960616/1‑94 (MQ=60)

                                        AGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGGCTGG                                                      >  SRR4302536.561384/1‑94 (MQ=60)

                                        AGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGAACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGG                                                      >  SRR4302536.3286452/1‑94 (MQ=60)

                                         GAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGT                                                     <  SRR4302536.1440469/94‑1 (MQ=60)

                                          AAGTTTCGGGGCGGATTTTCCATCTTTATGCCTGGCACGTACCCGACTTCCGCGGGACGTTATAGGCACATGAACATCAGGCGCTGGTCTGGTG                                                    >  SRR4302536.4585763/1‑94 (MQ=60)

                                          AAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTG                                                    <  SRR4302536.2627034/94‑1 (MQ=60)

                                           AGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGC                                                   >  SRR4302536.2973012/1‑94 (MQ=60)

                                               TCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCAC                                               <  SRR4302536.5745630/94‑1 (MQ=60)

                                                CGGGGCAGATTATCCATCTTCATGCCTGGCACCTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACC                                              <  SRR4302536.2215560/94‑1 (MQ=60)

                                                  GGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTG                                            >  SRR4302536.76694/1‑94 (MQ=60)

                                                    GCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAA                                          >  SRR4302536.6867920/1‑94 (MQ=60)

                                                    CCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAA                                          <  SRR4302536.2984821/94‑1 (MQ=60)

                                                     CGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAG                                         >  SRR4302536.5043147/1‑94 (MQ=60)

                                                     CGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAG                                         <  SRR4302536.3127511/94‑1 (MQ=60)

                                                     CGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAG                                         <  SRR4302536.3672322/94‑1 (MQ=60)

                                                     CGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAG                                         <  SRR4302536.6488162/94‑1 (MQ=60)

                                                     CGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAG                                         >  SRR4302536.2327230/1‑94 (MQ=60)

                                                      GGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGA                                        >  SRR4302536.2848921/1‑94 (MQ=60)

                                                       GATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGGAGAG                                       >  SRR4302536.2131272/1‑94 (MQ=60)

                                                       GATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAG                                       >  SRR4302536.5032035/1‑94 (MQ=60)

                                                       GATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAG                                       <  SRR4302536.5577287/94‑1 (MQ=60)

                                                          TATCTATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCG                                    <  SRR4302536.4572488/94‑1 (MQ=60)

                                                          TATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCG                                    <  SRR4302536.5265579/94‑1 (MQ=60)

                                                          TATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGGCTGGTGCTCACCTGAAGAGGCG                                    >  SRR4302536.2432645/1‑94 (MQ=60)

                                                           ATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGC                                   >  SRR4302536.4876631/1‑94 (MQ=60)

                                                            TCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCT                                  <  SRR4302536.729317/94‑1 (MQ=60)

                                                             CCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTG                                 >  SRR4302536.1558924/1‑94 (MQ=60)

                                                              CATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGC                                >  SRR4302536.6857689/1‑94 (MQ=60)

                                                              CATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGC                                >  SRR4302536.1376759/1‑94 (MQ=60)

                                                               ATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCA                               >  SRR4302536.3924406/1‑94 (MQ=60)

                                                               ATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCA                               >  SRR4302536.414646/1‑94 (MQ=60)

                                                                 CTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAAT                             <  SRR4302536.6442446/94‑1 (MQ=60)

                                                                 CTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAAT                             <  SRR4302536.5061017/94‑1 (MQ=60)

                                                                  TTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATA                            <  SRR4302536.572299/94‑1 (MQ=60)

                                                                  TTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATA                            >  SRR4302536.6115466/1‑94 (MQ=60)

                                                                   TCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATAT                           >  SRR4302536.552148/1‑94 (MQ=60)

                                                                   TCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATAT                           >  SRR4302536.5494510/1‑94 (MQ=60)

                                                                    CATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATC                          >  SRR4302536.2430100/1‑94 (MQ=60)

                                                                    CATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATC                          >  SRR4302536.6385232/1‑94 (MQ=60)

                                                                     ATGTCTGGCACGTCCCCGACTTCCGCCGGACTTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCC                         <  SRR4302536.1020064/94‑1 (MQ=60)

                                                                      TGCCTGGCAGGGACCCGACTTCCGCGGGACGGTACAGGTACACGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAAAGGTGCTGCAATATCCG                        >  SRR4302536.3783178/1‑94 (MQ=60)

                                                                      TGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCG                        >  SRR4302536.6728779/1‑94 (MQ=60)

                                                                       GCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGC                       >  SRR4302536.2865379/1‑94 (MQ=60)

                                                                        CCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCT                      <  SRR4302536.6158258/94‑1 (MQ=60)

                                                                        CCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCT                      >  SRR4302536.5957367/1‑94 (MQ=60)

                                                                         CTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTG                     <  SRR4302536.1428457/94‑1 (MQ=60)

                                                                         CTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGGCTGGTGCTCACCTGAAGAGGCGCTGCAATATTCGCTG                     >  SRR4302536.3226488/1‑94 (MQ=60)

                                                                          TGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGG                    >  SRR4302536.510284/1‑94 (MQ=60)

                                                                            GCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCC                  >  SRR4302536.6785592/1‑94 (MQ=60)

                                                                            GCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCC                  <  SRR4302536.1432568/94‑1 (MQ=60)

                                                                             CACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCC                 >  SRR4302536.3526830/1‑94 (MQ=60)

                                                                             CACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCC                 >  SRR4302536.3031684/1‑94 (MQ=60)

                                                                               CGTGCCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCT               <  SRR4302536.2593224/94‑1 (MQ=60)

                                                                                 TACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGC             <  SRR4302536.4646086/94‑1 (MQ=60)

                                                                                 TACCCGACTTCCGCGGGACGGTACAGGAACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGG             >  SRR4302536.1805316/1‑94 (MQ=60)

                                                                                  ACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCT            >  SRR4302536.965439/1‑94 (MQ=60)

                                                                                  ACCCGACTTCCGCGGGACGTTACACGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCT            <  SRR4302536.5497008/94‑1 (MQ=60)

                                                                                    CCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGA          >  SRR4302536.4729979/1‑94 (MQ=60)

                                                                                        CTTCGGCGGGACGTTACAGGCACATGAGCATCAGGCGCTGGTCTGCTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATT      <  SRR4302536.1305370/94‑1 (MQ=60)

                                                                                        CTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATT      >  SRR4302536.6457903/1‑94 (MQ=60)

                                                                                        CTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATT      <  SRR4302536.3185860/94‑1 (MQ=60)

                                                                                          TCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCC    >  SRR4302536.534051/1‑94 (MQ=60)

                                                                                            CGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCAT  >  SRR4302536.1320642/1‑94 (MQ=60)

                                                                                            CGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCAT  <  SRR4302536.6426550/94‑1 (MQ=60)

                                                                                            CGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCAT  >  SRR4302536.3352907/1‑94 (MQ=60)

TCGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCAT  >  NC_000913/1839689‑1839874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`