Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,840,986 G→A G198S (GGC→AGC)  gdhA → NADP‑specific glutamate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,840,9860GA100.0% 713.4 / NA 192G198S (GGC→AGC) gdhANADP‑specific glutamate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (72/120);  total (72/120)

Only 100 of 204 total aligned reads displayed.

GATATCGGGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGGGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGG  >  NC_000913/1840896‑1841074
                                                                                          |                                                                                        
gATATCGGGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGGGGGTGAAAAAAATCTCCAACAAAAACGCCTGCGTCTTCCACGGTAAGAGc                                                                                        >  2:381513/1‑93 (MQ=255)
 atatCGGGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGcc                                                                                       <  2:2265291/93‑1 (MQ=255)
     cGGGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTc                                                                                   <  2:2685967/93‑1 (MQ=255)
      ggggTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGGTGATGAAAAAGGTCTCCCAAAATAACCCCTGCGTCTTCACCGGGAAGAGTCTTTCa                                                                                  >  2:2293282/1‑93 (MQ=255)
        ggtgggtgGTCGTGAAGTCGGCTTTAGGGCGGGGATGATGAAAAAGCTCTCCAACAATGCCGCCTGCGTCTTCACCGGTAAGAGCCTTTCAtt                                                                                <  2:840342/93‑1 (MQ=255)
         gTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCAttt                                                                               <  2:6042477/93‑1 (MQ=255)
         gTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCAttt                                                                               <  2:4257530/93‑1 (MQ=255)
            ggtggtCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTggc                                                                            <  2:277647/93‑1 (MQ=255)
                   gTGAAGTCGGCTTTATGGCGGGGGTGATGGAAAAACTCTCCCACAATAACGCCTGCGGCTTTTCCCGCAAGAGCCTTTCATTTGGCGGCAggc                                                                     >  2:3100644/1‑91 (MQ=255)
                   gTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTc                                                                     <  2:6577511/93‑1 (MQ=255)
                    tGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCt                                                                    <  1:6234226/93‑1 (MQ=255)
                     gAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCtt                                                                   <  1:3358531/93‑1 (MQ=255)
                     gAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCtt                                                                   <  2:1763954/93‑1 (MQ=255)
                     gAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCtt                                                                   <  2:4188332/93‑1 (MQ=255)
                     gAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCtt                                                                   <  1:700937/93‑1 (MQ=255)
                     gAAGTCGGCTTTATGGCGGGGATGATGAAAAACCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCtt                                                                   <  1:3714548/93‑1 (MQ=255)
                         tCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTc                                                               <  2:3309354/93‑1 (MQ=255)
                         tCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTc                                                               <  1:4452968/93‑1 (MQ=255)
                           ggCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGc                                                             <  2:2448677/93‑1 (MQ=255)
                           ggCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGc                                                             <  2:4649710/93‑1 (MQ=255)
                               ttATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCgg                                                         <  2:4560754/93‑1 (MQ=255)
                                   ggCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGc                                                     <  2:3663688/93‑1 (MQ=255)
                                      ggggATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTAc                                                  >  1:4675291/1‑93 (MQ=255)
                                      ggggATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTAc                                                  <  1:4333998/93‑1 (MQ=255)
                                       gggATGATGAAAAAGCTCTACAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTAcc                                                 >  1:6526512/1‑93 (MQ=255)
                                          atgatgAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGc                                              <  1:2746893/93‑1 (MQ=255)
                                          atgataAAAAAGCCCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGc                                              <  1:5647277/93‑1 (MQ=255)
                                           tgatgaAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCt                                             >  1:5985440/1‑93 (MQ=255)
                                            gatgaAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTa                                            <  2:6658608/93‑1 (MQ=255)
                                             atgaAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTAc                                           >  2:2605541/1‑93 (MQ=255)
                                              tgaAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACg                                          >  1:6147523/1‑93 (MQ=255)
                                               gaAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACgg                                         <  2:6442822/93‑1 (MQ=255)
                                                aaaaaGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGt                                        >  1:2944915/1‑93 (MQ=255)
                                                aaaaaGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGt                                        <  2:5511899/93‑1 (MQ=255)
                                                 aaaaGCTCTCCACCAATACCGCCTCCGTCTTCACCAGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTc                                       <  1:2608729/93‑1 (MQ=255)
                                                 aaaaGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTc                                       >  1:2841432/1‑93 (MQ=255)
                                                 aaaaGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTc                                       <  2:4462414/93‑1 (MQ=255)
                                                 aaaaGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTc                                       <  2:5492146/93‑1 (MQ=255)
                                                 aaaaGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGCCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTc                                       <  1:1090471/93‑1 (MQ=255)
                                                  aaaGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCt                                      <  2:910172/93‑1 (MQ=255)
                                                   aaGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTg                                     >  1:548837/1‑93 (MQ=255)
                                                   aaGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTg                                     <  2:5005034/93‑1 (MQ=255)
                                                   aaGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTg                                     >  2:4287701/1‑93 (MQ=255)
                                                    aGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTgg                                    >  1:3186924/1‑93 (MQ=255)
                                                    aGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTgg                                    >  2:3995194/1‑93 (MQ=255)
                                                     gCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGt                                   <  1:1907027/93‑1 (MQ=255)
                                                     gCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGt                                   <  2:4030295/93‑1 (MQ=255)
                                                      ctctCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGtt                                  <  1:5929152/93‑1 (MQ=255)
                                                      ctctCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGtt                                  <  1:1619233/93‑1 (MQ=255)
                                                       tctcCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGttt                                 >  2:2124686/1‑93 (MQ=255)
                                                       tatcCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGttt                                 >  1:3468602/3‑93 (MQ=255)
                                                        ctcCATCAATGCCGCCTGCGTCTTCACTGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTa                                <  1:195699/93‑1 (MQ=255)
                                                        ctcCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTa                                <  2:1241471/93‑1 (MQ=255)
                                                        ctcCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTa                                <  1:5917371/93‑1 (MQ=255)
                                                          ccAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTAtt                              <  2:3699482/93‑1 (MQ=255)
                                                            aacaaTGCCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTc                            <  2:3006087/93‑1 (MQ=255)
                                                            aacaaTACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTc                            <  2:6077835/93‑1 (MQ=255)
                                                            aacaaTACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTc                            <  1:2687052/93‑1 (MQ=255)
                                                             acaaTACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTca                           >  1:2377640/1‑93 (MQ=255)
                                                               aaTACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTcaca                         >  1:1725699/1‑93 (MQ=255)
                                                               aaTACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTcaca                         >  1:1044203/1‑93 (MQ=255)
                                                               aaTACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTcaca                         <  1:819170/93‑1 (MQ=255)
                                                               aaTACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTcaca                         <  2:1670144/93‑1 (MQ=255)
                                                               aaTACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTcaca                         <  1:6570614/93‑1 (MQ=255)
                                                                aTACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAg                        >  2:235437/1‑93 (MQ=255)
                                                                aTACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAg                        >  2:2021603/1‑93 (MQ=255)
                                                                aTACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGGTTATTTCACAg                        >  1:4708322/1‑93 (MQ=255)
                                                                 tACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGa                       <  1:4248609/93‑1 (MQ=255)
                                                                 tACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGa                       <  2:314263/93‑1 (MQ=255)
                                                                  aCCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGaa                      <  2:1482470/93‑1 (MQ=255)
                                                                  aCCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGaa                      >  1:1462883/1‑93 (MQ=255)
                                                                    cGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGc                    >  2:4936812/1‑93 (MQ=255)
                                                                    cGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGc                    <  1:1213903/93‑1 (MQ=255)
                                                                      ccTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCaa                  <  1:493146/93‑1 (MQ=255)
                                                                      ccTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCaa                  >  2:2748365/1‑93 (MQ=255)
                                                                       cTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAAt                 <  2:2138926/93‑1 (MQ=255)
                                                                       cTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAAt                 <  2:2833099/93‑1 (MQ=255)
                                                                       cTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAAt                 <  2:4321241/93‑1 (MQ=255)
                                                                        tGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATg                <  1:2219621/93‑1 (MQ=255)
                                                                        tGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATg                <  2:5931178/93‑1 (MQ=255)
                                                                        tGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATg                >  1:1173370/1‑93 (MQ=255)
                                                                         gCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGc               >  2:3452938/1‑93 (MQ=255)
                                                                         gCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGc               >  2:6099081/1‑93 (MQ=255)
                                                                           gTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTa             >  1:1645136/1‑93 (MQ=255)
                                                                           gTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGGTTATTTCACAGAAGCAATGCTa             >  1:2892680/1‑93 (MQ=255)
                                                                            tCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTaa            <  1:1320005/93‑1 (MQ=255)
                                                                            tCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTaa            >  1:3581198/1‑93 (MQ=255)
                                                                            tCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTaa            >  1:3018621/1‑93 (MQ=255)
                                                                              ttCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTaaaa          <  2:1036663/93‑1 (MQ=255)
                                                                              ttCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGGTTATTTCACAGAAGCAATGCTaaaa          >  1:6710516/1‑93 (MQ=255)
                                                                              ttCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGGTTATTTCACAGAAGCAATGCTaaaa          >  1:4626654/1‑93 (MQ=255)
                                                                               tCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAAc         >  2:3061302/1‑93 (MQ=255)
                                                                                 aCCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGc       <  2:4549656/93‑1 (MQ=255)
                                                                                  ccGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGcc      >  1:6116416/1‑93 (MQ=255)
                                                                                    ggTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCAc    <  1:6638287/93‑1 (MQ=255)
                                                                                    ggTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCAc    <  1:2440435/93‑1 (MQ=255)
                                                                                    ggTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCAc    >  1:4040866/1‑93 (MQ=255)
                                                                                    ggTAAGAGCCTGTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCAc    <  1:5248543/93‑1 (MQ=255)
                                                                                     gTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACg   >  2:4869597/1‑93 (MQ=255)
                                                                                      tAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCACTGCTAAAACGCCACgg  >  2:2906382/1‑93 (MQ=255)
                                                                                          |                                                                                        
GATATCGGGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGGGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGG  >  NC_000913/1840896‑1841074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGTGATATCGGGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGGGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTATG  >  NC_000913/1840893‑1841078
                                                                                             |                                                                                            
GGTGATATCGGGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGA                                                                                              <  SRR4302536.1206174/94‑1 (MQ=60)
 GTGATATCGGGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAG                                                                                             <  SRR4302536.3635602/94‑1 (MQ=60)
    ATATCGGGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCT                                                                                          <  SRR4302536.1840678/94‑1 (MQ=60)
    ATATCGGGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCT                                                                                          <  SRR4302536.248422/94‑1 (MQ=60)
          GGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATT                                                                                    <  SRR4302536.2716955/94‑1 (MQ=60)
           GTTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTT                                                                                   <  SRR4302536.2840513/94‑1 (MQ=60)
           GGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGGTGATGAAAAAACTCTCCAACAATAACGCCTGCGTCTTTACCGGGAAGAGCCTTTTATTT                                                                                   >  SRR4302536.1557609/1‑94 (MQ=60)
            GTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTG                                                                                  <  SRR4302536.4823738/94‑1 (MQ=60)
             TTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGG                                                                                 <  SRR4302536.3553909/94‑1 (MQ=60)
                     CGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAAATCTCCCACAAAACCGCCTGCGTCTTCACCGGCTAGAGCCCTTCATTTTGGGGCAGTC                                                                         >  SRR4302536.4487197/1‑94 (MQ=50)
                      GTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCT                                                                        <  SRR4302536.671148/94‑1 (MQ=60)
                       TGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTT                                                                       <  SRR4302536.6419962/94‑1 (MQ=60)
                       TGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTT                                                                       <  SRR4302536.1667605/94‑1 (MQ=60)
                        GAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTA                                                                      <  SRR4302536.721402/94‑1 (MQ=60)
                        GAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTA                                                                      <  SRR4302536.3458204/94‑1 (MQ=60)
                        GAAGTCGGCTTTATGGCGGGGATGATGAAAAACCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTA                                                                      <  SRR4302536.3825593/94‑1 (MQ=60)
                          AGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATT                                                                    <  SRR4302536.6305863/94‑1 (MQ=60)
                            TCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCG                                                                  <  SRR4302536.4586721/94‑1 (MQ=60)
                              GGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCCGGGGCTTCACCGGTAAGAGCCTTTCATTTGGGGGGAGTCTTATTtgtc                                                                >  SRR4302536.2320684/1‑90 (MQ=60)
                               GCTTTATGGCGGGGGTGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTTGCGGCAGTCTTATTCGCCC                                                               >  SRR4302536.2581424/1‑94 (MQ=60)
                                  TTATGGCGGGGATGATGAAAAAGCTCTCCCACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTTGCGGCAGTCTTATTCGCCCGGA                                                            >  SRR4302536.506820/1‑94 (MQ=60)
                                      GGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCT                                                        <  SRR4302536.3345223/94‑1 (MQ=60)
                                        CGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTAC                                                      >  SRR4302536.4815880/1‑94 (MQ=60)
                                         GGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACC                                                     <  SRR4302536.6134312/94‑1 (MQ=60)
                                         GGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACC                                                     <  SRR4302536.4463800/94‑1 (MQ=60)
                                         GGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACC                                                     >  SRR4302536.5472164/1‑94 (MQ=60)
                                         GGGGATGATGAAAAAGCTCTACAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACC                                                     >  SRR4302536.6720908/1‑94 (MQ=60)
                                             ATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCT                                                 >  SRR4302536.6163900/1‑94 (MQ=60)
                                             ATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCT                                                 <  SRR4302536.2828696/94‑1 (MQ=60)
                                             ATGATAAAAAAGCCCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCT                                                 <  SRR4302536.5815079/94‑1 (MQ=60)
                                              TGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTAACGGCTA                                                >  SRR4302536.2637900/1‑94 (MQ=60)
                                                ATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACG                                              >  SRR4302536.6330671/1‑94 (MQ=60)
                                                  GAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGT                                            >  SRR4302536.3031728/1‑94 (MQ=60)
                                                  GAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGT                                            >  SRR4302536.3031726/1‑94 (MQ=60)
                                                  GAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGT                                            >  SRR4302536.5285218/1‑94 (MQ=60)
                                                  GAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGC                                            >  SRR4302536.394436/1‑94 (MQ=60)
                                                   AAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTC                                           >  SRR4302536.2925504/1‑94 (MQ=60)
                                                    AAAAGCTCTCCACCAATACCGCCTCCGTCTTCACCAGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCT                                          <  SRR4302536.2687017/94‑1 (MQ=60)
                                                    AAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCT                                          <  SRR4302536.6932502/94‑1 (MQ=60)
                                                    AAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGCCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCT                                          <  SRR4302536.1123169/94‑1 (MQ=60)
                                                     AAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTG                                         >  SRR4302536.562835/1‑94 (MQ=60)
                                                     AAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTG                                         >  SRR4302536.722502/1‑94 (MQ=60)
                                                     AAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTG                                         >  SRR4302536.1391631/1‑94 (MQ=60)
                                                     AAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTG                                         <  SRR4302536.6096844/94‑1 (MQ=60)
                                                      AAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGG                                        >  SRR4302536.4729507/1‑94 (MQ=60)
                                                      AAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGG                                        >  SRR4302536.1346361/1‑94 (MQ=60)
                                                      AAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGG                                        >  SRR4302536.3280364/1‑94 (MQ=60)
                                                        GCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTT                                      <  SRR4302536.1089273/94‑1 (MQ=60)
                                                        GCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTT                                      <  SRR4302536.1964428/94‑1 (MQ=60)
                                                         CTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTT                                     <  SRR4302536.6105771/94‑1 (MQ=60)
                                                         CTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTT                                     <  SRR4302536.1666405/94‑1 (MQ=60)
                                                         CTATCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTT                                     >  SRR4302536.3571984/1‑94 (MQ=60)
                                                          TCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTA                                    >  SRR4302536.3637621/1‑94 (MQ=60)
                                                           CTCCATCAATGCCGCCTGCGTCTTCACTGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTAT                                   <  SRR4302536.200847/94‑1 (MQ=60)
                                                           CTCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTAT                                   <  SRR4302536.6093633/94‑1 (MQ=60)
                                                            TCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATT                                  >  SRR4302536.3804473/1‑94 (MQ=60)
                                                            TCCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATT                                  >  SRR4302536.6222616/1‑94 (MQ=60)
                                                             CCAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTA                                 <  SRR4302536.6023349/94‑1 (MQ=60)
                                                              CAACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTC                                >  SRR4302536.2047402/1‑94 (MQ=60)
                                                               AACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCA                               <  SRR4302536.2767294/94‑1 (MQ=60)
                                                               AACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCA                               >  SRR4302536.2449665/1‑94 (MQ=60)
                                                               AACAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCA                               >  SRR4302536.6729590/1‑94 (MQ=60)
                                                                 CAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACA                             >  SRR4302536.1075258/1‑94 (MQ=60)
                                                                 CAATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACA                             >  SRR4302536.1775535/1‑94 (MQ=60)
                                                                  AATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAG                            <  SRR4302536.6766151/94‑1 (MQ=60)
                                                                  AATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAG                            <  SRR4302536.843282/94‑1 (MQ=60)
                                                                  AATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGGTTATTTCACAG                            >  SRR4302536.4849933/1‑94 (MQ=60)
                                                                  AATACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTGGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAG                            <  SRR4302536.2975167/94‑1 (MQ=60)
                                                                    TACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAA                          <  SRR4302536.4375160/94‑1 (MQ=60)
                                                                    TACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAA                          >  SRR4302536.1506165/1‑94 (MQ=60)
                                                                     ACCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAG                         <  SRR4302536.4273897/94‑1 (MQ=60)
                                                                      CCGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGC                        >  SRR4302536.1174532/1‑94 (MQ=60)
                                                                       CGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCA                       >  SRR4302536.2362883/1‑94 (MQ=60)
                                                                       CGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCA                       <  SRR4302536.1250360/94‑1 (MQ=60)
                                                                       CGCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCA                       <  SRR4302536.4981549/94‑1 (MQ=60)
                                                                        GCCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAA                      >  SRR4302536.97167/1‑94 (MQ=60)
                                                                         CCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAAT                     <  SRR4302536.2784424/94‑1 (MQ=60)
                                                                         CCTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAAT                     <  SRR4302536.505905/94‑1 (MQ=60)
                                                                          CTGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATG                    >  SRR4302536.1208668/1‑94 (MQ=60)
                                                                           cgcgcctccacctGTAAGAGCCTTTCATTTGGCGGCAGTCTTATCCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATCTCACAGAAGCAATGC                   <  SRR4302536.4459195/81‑1 (MQ=60)
                                                                           TGCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGC                   <  SRR4302536.2286750/94‑1 (MQ=60)
                                                                            GCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCT                  <  SRR4302536.6874582/94‑1 (MQ=60)
                                                                            GCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCT                  <  SRR4302536.6824160/94‑1 (MQ=60)
                                                                            GCGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCT                  <  SRR4302536.3104584/94‑1 (MQ=60)
                                                                             CGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTA                 >  SRR4302536.1692981/1‑94 (MQ=60)
                                                                             CGTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGGTTATTTCACAGAAGCAATGCTA                 >  SRR4302536.2977986/1‑94 (MQ=60)
                                                                              GTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAA                >  SRR4302536.3688282/1‑94 (MQ=60)
                                                                              GTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAA                >  SRR4302536.3107325/1‑94 (MQ=60)
                                                                              GTCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAA                >  SRR4302536.1756280/1‑94 (MQ=60)
                                                                               TCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAA               <  SRR4302536.1359407/94‑1 (MQ=60)
                                                                               TCTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAA               <  SRR4302536.4568198/94‑1 (MQ=60)
                                                                                CTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAA              >  SRR4302536.319392/1‑94 (MQ=60)
                                                                                CTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGGTTATTTCACAGAAGCAATGCTAAAA              >  SRR4302536.6909759/1‑94 (MQ=60)
                                                                                CTTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGGTTATTTCACAGAAGCAATGCTAAAA              >  SRR4302536.4765676/1‑94 (MQ=60)
                                                                                 TTCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAAC             <  SRR4302536.5695292/94‑1 (MQ=60)
                                                                                  TCACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACG            <  SRR4302536.6340726/94‑1 (MQ=60)
                                                                                    ACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCC          <  SRR4302536.1229514/94‑1 (MQ=60)
                                                                                    ACCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCC          >  SRR4302536.6298721/1‑94 (MQ=60)
                                                                                     CCGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCA         >  SRR4302536.47593/1‑94 (MQ=60)
                                                                                      TGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCAC        >  SRR4302536.2009593/1‑94 (MQ=60)
                                                                                      CGGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCAC        >  SRR4302536.4160665/1‑94 (MQ=60)
                                                                                       GGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACG       <  SRR4302536.2514194/94‑1 (MQ=60)
                                                                                       GGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACG       <  SRR4302536.3806820/94‑1 (MQ=60)
                                                                                       GGTAAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACG       <  SRR4302536.6835696/94‑1 (MQ=60)
                                                                                       GGTAAGAGCCTGTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACG       <  SRR4302536.5404945/94‑1 (MQ=60)
                                                                                          AAGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTA    >  SRR4302536.741268/1‑94 (MQ=60)
                                                                                           AGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTAT   >  SRR4302536.4802053/1‑94 (MQ=60)
                                                                                           AGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTAT   <  SRR4302536.3296513/94‑1 (MQ=60)
                                                                                           AGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTAT   >  SRR4302536.1504701/1‑94 (MQ=60)
                                                                                           AGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTAT   >  SRR4302536.6311835/1‑94 (MQ=60)
                                                                                           AGAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTAT   <  SRR4302536.6404814/94‑1 (MQ=60)
                                                                                            GAGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTATG  <  SRR4302536.6092068/94‑1 (MQ=60)
                                                                                             |                                                                                            
GGTGATATCGGGGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGGGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTATG  >  NC_000913/1840893‑1841078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑