Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,845,852	T→C	T61A (ACC→GCC)	selD ←	selenophosphate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,845,852	0	T	C	100.0%	696.4 / NA	216	T61A (ACC→GCC)	selD	selenophosphate synthase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (122/94); total (122/94)

Only 100 of 218 total aligned reads displayed.

GCTGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGTGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTAT  >  NC_000913/1845763‑1845941

gCTGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGcc                                                                                        <  2:2310159/93‑1 (MQ=255)

gCTGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGcc                                                                                        <  2:2825717/93‑1 (MQ=255)

gCTGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGcc                                                                                        <  2:698049/93‑1 (MQ=255)

  tGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCAt                                                                                      >  1:1027251/1‑93 (MQ=255)

   gATGGCGTGAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCAtt                                                                                     <  2:751785/93‑1 (MQ=255)

   gATGCCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGCCGGTGGTACTGATAACGCTGGCGCCAtt                                                                                     <  1:2944905/93‑1 (MQ=255)

       gCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGccc                                                                                 >  1:6360371/1‑93 (MQ=255)

         gTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAg                                                                               >  1:4816513/1‑93 (MQ=255)

         gTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAg                                                                               <  2:4732291/93‑1 (MQ=255)

         gTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAg                                                                               >  1:4119514/1‑93 (MQ=255)

          ttAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGa                                                                              <  1:6182618/93‑1 (MQ=255)

          ttAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGa                                                                              >  2:5025913/1‑93 (MQ=255)

           tAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGAt                                                                             >  1:2547846/1‑93 (MQ=255)

            aGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATc                                                                            >  1:3651989/1‑93 (MQ=255)

             gTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCg                                                                           >  1:306696/1‑93 (MQ=255)

             gTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCg                                                                           >  1:3397565/1‑93 (MQ=255)

             gTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCg                                                                           >  2:399407/1‑93 (MQ=255)

              tCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGt                                                                          >  1:6675102/1‑93 (MQ=255)

                gccgcAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTac                                                                        <  2:4722840/93‑1 (MQ=255)

                 ccgcAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTaca                                                                       <  2:1627885/93‑1 (MQ=255)

                   gcAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCATATCGTACAcc                                                                     >  1:1696297/1‑93 (MQ=255)

                   gcAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACAcc                                                                     <  2:2528266/93‑1 (MQ=255)

                   gcAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACAcc                                                                     >  2:915478/1‑93 (MQ=255)

                   gcAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACAcc                                                                     >  2:1052223/1‑93 (MQ=255)

                    cAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACAccg                                                                    >  2:477417/1‑93 (MQ=255)

                      aTGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACAccgcc                                                                  >  1:2129437/1‑93 (MQ=255)

                          ggCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCAt                                                              <  2:5541488/93‑1 (MQ=255)

                           gCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCAtc                                                             >  1:5193224/1‑93 (MQ=255)

                             cAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCAtcgt                                                           <  1:1226175/93‑1 (MQ=255)

                               aaaTCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCAtcgtcg                                                         <  1:1305681/93‑1 (MQ=255)

                               aaaTCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCAtcgtcg                                                         >  2:6205669/1‑93 (MQ=255)

                                aaTCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTcgc                                                        >  2:1957222/1‑93 (MQ=255)

                                 aTCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTcgcg                                                       >  1:5853567/1‑93 (MQ=255)

                                 aTCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTcgcg                                                       >  1:4952220/1‑93 (MQ=255)

                                  tCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCgg                                                      <  2:5240677/93‑1 (MQ=255)

                                    gAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGt                                                    >  2:965293/1‑93 (MQ=255)

                                    gAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGt                                                    >  1:3204326/1‑93 (MQ=255)

                                    gAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGt                                                    >  1:335517/1‑93 (MQ=255)

                                     aaaGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGtt                                                   >  1:1949857/1‑93 (MQ=255)

                                     aaaGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGtt                                                   >  2:637605/1‑93 (MQ=255)

                                      aaGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGttt                                                  >  1:1715344/1‑93 (MQ=255)

                                      aaGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGttt                                                  <  1:2745179/93‑1 (MQ=255)

                                       aGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTc                                                 <  2:3216895/93‑1 (MQ=255)

                                          aTTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCAtt                                              >  1:2426425/1‑93 (MQ=255)

                                              tCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTAccc                                          >  2:6051099/1‑93 (MQ=255)

                                              tCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTAccc                                          <  1:3175942/93‑1 (MQ=255)

                                                 aCGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCcaca                                       <  2:3969764/93‑1 (MQ=255)

                                                 aCGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCcaca                                       <  2:5575701/93‑1 (MQ=255)

                                                  cGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACaa                                      <  1:3529981/93‑1 (MQ=255)

                                                  cGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACaa                                      >  1:675893/1‑93 (MQ=255)

                                                  cGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACaa                                      <  2:6008709/93‑1 (MQ=255)

                                                   gATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAg                                     >  2:1148744/1‑93 (MQ=255)

                                                   gATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAg                                     >  2:133850/1‑93 (MQ=255)

                                                    aTCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGc                                    >  2:5662241/1‑93 (MQ=255)

                                                    aTCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGc                                    >  1:1541157/1‑93 (MQ=255)

                                                     tCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCa                                   >  1:5428341/1‑93 (MQ=255)

                                                     tCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCa                                   >  2:1404072/1‑93 (MQ=255)

                                                      cgccATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCaa                                  <  1:4194486/90‑1 (MQ=255)

                                                      cGGCATAAAGAAGTCGGTGGTACTGATAACTCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCaa                                  <  2:2695226/93‑1 (MQ=255)

                                                      cGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCaa                                  <  2:2530550/93‑1 (MQ=255)

                                                       ggCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCaaa                                 >  1:3097739/1‑93 (MQ=255)

                                                       ggCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCaaa                                 <  2:2216065/93‑1 (MQ=255)

                                                       ggCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCaaa                                 <  2:3270909/93‑1 (MQ=255)

                                                          aTAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTc                              >  2:287440/1‑93 (MQ=255)

                                                          aTAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTc                              >  1:1272316/1‑93 (MQ=255)

                                                            aaaGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCgg                            <  1:6392150/93‑1 (MQ=255)

                                                            aaaGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCgg                            >  1:4213913/1‑93 (MQ=255)

                                                             aagaagTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGa                           >  2:186205/1‑93 (MQ=255)

                                                             aagaagTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGa                           <  2:1110770/93‑1 (MQ=255)

                                                             aagaagTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGa                           <  1:3785799/93‑1 (MQ=255)

                                                              agaagTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGAt                          >  1:436306/1‑93 (MQ=255)

                                                              agaagTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGAt                          <  1:2037194/93‑1 (MQ=255)

                                                               gaagTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATc                         <  2:579575/93‑1 (MQ=255)

                                                               gaagTCGGTGGTACTGATAACGCTAGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCCGATc                         >  1:5348263/1‑93 (MQ=255)

                                                                 agTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATcaa                       <  1:5571187/93‑1 (MQ=255)

                                                                 agTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCAGATcaa                       >  1:4629986/1‑93 (MQ=255)

                                                                  gTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATcaac                      >  2:3438726/1‑93 (MQ=255)

                                                                  gTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATcaac                      <  1:5920697/93‑1 (MQ=255)

                                                                     ggtggtACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACaaa                   <  1:3260828/93‑1 (MQ=255)

                                                                        ggtACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATGAACAAACtt                >  1:4567207/1‑93 (MQ=255)

                                                                        ggtACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACtt                >  1:665248/1‑93 (MQ=255)

                                                                         gtACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTc               >  2:4547610/1‑93 (MQ=255)

                                                                         gtACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTc               >  1:4344014/1‑93 (MQ=255)

                                                                         gtACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTc               <  2:645931/93‑1 (MQ=255)

                                                                          tACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACCAACTTCg              >  1:6209999/1‑93 (MQ=255)

                                                                          tACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCg              >  1:2377142/1‑93 (MQ=255)

                                                                           aCTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGc             <  2:2026769/93‑1 (MQ=255)

                                                                            cTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGcc            >  2:5305852/1‑93 (MQ=255)

                                                                             tGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCt           <  2:6123677/93‑1 (MQ=255)

                                                                             tGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCt           <  1:3328056/93‑1 (MQ=255)

                                                                             tGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCt           >  2:6585281/1‑93 (MQ=255)

                                                                             tGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGATTCATTACCCACAATCAAATTCGGATCAACAAACTTCGCCt           >  2:2394478/1‑93 (MQ=255)

                                                                               aTAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGc         >  2:5121496/1‑93 (MQ=255)

                                                                               aTAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGc         <  1:5795478/93‑1 (MQ=255)

                                                                                tAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCt        >  1:1886308/1‑93 (MQ=255)

                                                                                   cGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCAc     <  1:1168391/93‑1 (MQ=255)

                                                                                    gCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACt    <  1:2662275/93‑1 (MQ=255)

                                                                                    gCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACt    >  1:5123210/1‑93 (MQ=255)

                                                                                    gCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACt    >  2:3004071/1‑93 (MQ=255)

                                                                                    gCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACt    >  2:4502053/1‑93 (MQ=255)

GCTGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGTGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTAT  >  NC_000913/1845763‑1845941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TATCGCTGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGTGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAG  >  NC_000913/1845759‑1845945

TATCGCTGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGC                                                                                               <  SRR4302536.127610/94‑1 (MQ=60)

 ATCGCTGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCG                                                                                              <  SRR4302536.6032420/94‑1 (MQ=60)

   CGCTGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCC                                                                                            >  SRR4302536.2555331/1‑94 (MQ=60)

     CTGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCAT                                                                                          >  SRR4302536.1057679/1‑94 (MQ=60)

       GATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTG                                                                                        <  SRR4302536.5155402/94‑1 (MQ=60)

       GATGGCGTTAGGCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGACGGTGGTACTGATAACGCTGGCGCCATTG                                                                                        <  SRR4302536.3031719/94‑1 (MQ=60)

       GATGCCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGCCGGTGGTACTGATAACGCTGGCGCCATTG                                                                                        <  SRR4302536.3031718/94‑1 (MQ=60)

          GGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCC                                                                                     >  SRR4302536.6549868/1‑94 (MQ=60)

            CGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAG                                                                                   >  SRR4302536.4241667/1‑94 (MQ=60)

            CGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAG                                                                                   >  SRR4302536.4961462/1‑94 (MQ=60)

             GTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGA                                                                                  >  SRR4302536.1762964/1‑94 (MQ=60)

              TTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGAT                                                                                 <  SRR4302536.1456343/94‑1 (MQ=60)

              TTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGAT                                                                                 <  SRR4302536.6366754/94‑1 (MQ=60)

              TTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGAT                                                                                 <  SRR4302536.1692136/94‑1 (MQ=60)

              TTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGAT                                                                                 <  SRR4302536.6010542/94‑1 (MQ=60)

              TTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGAT                                                                                 <  SRR4302536.316264/94‑1 (MQ=60)

              TTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGAT                                                                                 >  SRR4302536.2624577/1‑94 (MQ=60)

               TAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATC                                                                                >  SRR4302536.3761169/1‑94 (MQ=60)

                AGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCG                                                                               >  SRR4302536.314851/1‑94 (MQ=60)

                AGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCG                                                                               >  SRR4302536.3498628/1‑94 (MQ=60)

                 GTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGT                                                                              >  SRR4302536.6873436/1‑94 (MQ=60)

                 GTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGGCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGT                                                                              <  SRR4302536.2058412/94‑1 (MQ=60)

                   CGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTAC                                                                            <  SRR4302536.3676120/94‑1 (MQ=60)

                      CGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCATATCGTACACC                                                                         >  SRR4302536.1745396/1‑94 (MQ=60)

                      CGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACC                                                                         >  SRR4302536.3437632/1‑94 (MQ=60)

                       GCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCG                                                                        >  SRR4302536.4788263/1‑94 (MQ=60)

                       GCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCG                                                                        >  SRR4302536.3515658/1‑94 (MQ=60)

                        CAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGC                                                                       >  SRR4302536.3216587/1‑94 (MQ=60)

                        CAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTCGCGCCATTGCCCAGATCGTACACCGC                                                                       >  SRR4302536.5549040/1‑94 (MQ=60)

                         AATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCC                                                                      >  SRR4302536.2193379/1‑94 (MQ=60)

                           GGCGGCCAAAATCGAAAGGATTATCAACGATCGTCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGC                                                                    <  SRR4302536.6366060/94‑1 (MQ=60)

                             CGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCAT                                                                  >  SRR4302536.6409679/1‑94 (MQ=60)

                              GGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATC                                                                 <  SRR4302536.3284927/94‑1 (MQ=60)

                              GGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATC                                                                 >  SRR4302536.5348079/1‑94 (MQ=60)

                                 CAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTC                                                              <  SRR4302536.1263002/94‑1 (MQ=60)

                                   AAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGC                                                            <  SRR4302536.5920052/94‑1 (MQ=60)

                                   AAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGC                                                            <  SRR4302536.1344661/94‑1 (MQ=60)

                                   AAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGC                                                            >  SRR4302536.3349218/1‑94 (MQ=60)

                                   AAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTAGC                                                            >  SRR4302536.4209654/1‑94 (MQ=60)

                                    AATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCG                                                           >  SRR4302536.6027971/1‑94 (MQ=60)

                                    AATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCG                                                           >  SRR4302536.5100998/1‑94 (MQ=60)

                                       CGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGT                                                        <  SRR4302536.2663846/94‑1 (MQ=60)

                                       CGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGT                                                        >  SRR4302536.3298309/1‑94 (MQ=60)

                                       CGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGT                                                        >  SRR4302536.344411/1‑94 (MQ=60)

                                       CGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGT                                                        >  SRR4302536.2099094/1‑94 (MQ=60)

                                        GAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTTGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTT                                                       >  SRR4302536.2485471/1‑94 (MQ=60)

                                        GAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTT                                                       >  SRR4302536.2008492/1‑94 (MQ=60)

                                         AAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTT                                                      <  SRR4302536.6861681/94‑1 (MQ=60)

                                         AAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTT                                                      <  SRR4302536.526606/94‑1 (MQ=60)

                                         AAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTT                                                      >  SRR4302536.1764940/1‑94 (MQ=60)

                                          AAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTC                                                     <  SRR4302536.2826937/94‑1 (MQ=60)

                                           AGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCA                                                    >  SRR4302536.4274762/1‑94 (MQ=60)

                                           AGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCA                                                    >  SRR4302536.5443841/1‑94 (MQ=60)

                                           AGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCA                                                    <  SRR4302536.6569690/94‑1 (MQ=60)

                                            GGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCAT                                                   <  SRR4302536.4420592/94‑1 (MQ=60)

                                             GATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATT                                                  <  SRR4302536.2447566/94‑1 (MQ=60)

                                             GATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATT                                                  >  SRR4302536.2499790/1‑94 (MQ=60)

                                              ATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTA                                                 <  SRR4302536.4488594/94‑1 (MQ=60)

                                               TTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTAC                                                >  SRR4302536.1894883/1‑94 (MQ=60)

                                               TTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTAC                                                <  SRR4302536.2883057/94‑1 (MQ=60)

                                                TATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACC                                               >  SRR4302536.4643901/1‑94 (MQ=60)

                                                 ATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCC                                              >  SRR4302536.1138577/1‑94 (MQ=60)

                                                  TCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCA                                             <  SRR4302536.3269027/94‑1 (MQ=60)

                                                   CAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCAC                                            >  SRR4302536.1227015/1‑94 (MQ=60)

                                                   CAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCAC                                            >  SRR4302536.274989/1‑94 (MQ=60)

                                                    AACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACA                                           >  SRR4302536.4726460/1‑94 (MQ=60)

                                                     ACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAA                                          >  SRR4302536.695672/1‑94 (MQ=60)

                                                      CGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAG                                         <  SRR4302536.3635458/94‑1 (MQ=60)

                                                      CGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAG                                         >  SRR4302536.3399979/1‑94 (MQ=60)

                                                      CGATCGCCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAG                                         <  SRR4302536.4531321/94‑1 (MQ=60)

                                                       GATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGC                                        >  SRR4302536.1586469/1‑94 (MQ=60)

                                                        ATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCA                                       >  SRR4302536.5590639/1‑94 (MQ=60)

                                                          CGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAA                                     >  SRR4302536.5606690/1‑94 (MQ=60)

                                                          CGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAA                                     >  SRR4302536.3188213/1‑94 (MQ=60)

                                                          CGCCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAA                                     <  SRR4302536.4319143/94‑1 (MQ=60)

                                                            GCATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATT                                   >  SRR4302536.3775432/1‑94 (MQ=60)

                                                             CATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTC                                  >  SRR4302536.1310427/1‑94 (MQ=60)

                                                             CATAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTC                                  >  SRR4302536.1943671/1‑94 (MQ=60)

                                                               TAAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGG                                >  SRR4302536.4339205/1‑94 (MQ=60)

                                                                AAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGA                               <  SRR4302536.6582873/94‑1 (MQ=60)

                                                                AAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGA                               >  SRR4302536.6070097/1‑94 (MQ=60)

                                                                AAAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGA                               >  SRR4302536.6037567/1‑94 (MQ=60)

                                                                 AAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGAT                              >  SRR4302536.447767/1‑94 (MQ=60)

                                                                 AAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGAT                              <  SRR4302536.3898752/94‑1 (MQ=60)

                                                                 AAGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGAT                              >  SRR4302536.2434467/1‑94 (MQ=60)

                                                                  AGAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATC                             <  SRR4302536.2098543/94‑1 (MQ=60)

                                                                  AGAAGTCGGTGGTACTGATAACGCTAGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCCGATC                             >  SRR4302536.5507948/1‑94 (MQ=60)

                                                                   GAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCA                            <  SRR4302536.5062169/94‑1 (MQ=60)

                                                                   GAAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCA                            <  SRR4302536.6798825/94‑1 (MQ=60)

                                                                    AAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAA                           >  SRR4302536.6370216/1‑94 (MQ=60)

                                                                    AAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAA                           >  SRR4302536.3473317/1‑94 (MQ=60)

                                                                    AAGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCAGATCAA                           >  SRR4302536.4769109/1‑94 (MQ=60)

                                                                    AAGTCGGAGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAACTCGGATCAA                           >  SRR4302536.6890304/1‑94 (MQ=60)

                                                                     AGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAAC                          <  SRR4302536.130716/94‑1 (MQ=60)

                                                                     AGTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAAC                          <  SRR4302536.5737039/94‑1 (MQ=60)

                                                                      GTCGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACA                         <  SRR4302536.6097051/94‑1 (MQ=60)

                                                                        CGGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAA                       <  SRR4302536.3779165/94‑1 (MQ=60)

                                                                         GGTGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAAC                      <  SRR4302536.3356449/94‑1 (MQ=60)

                                                                           TGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATGAACAAACTT                    >  SRR4302536.4704261/1‑94 (MQ=60)

                                                                           TGGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTT                    >  SRR4302536.684760/1‑94 (MQ=60)

                                                                            GGTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTC                   >  SRR4302536.4474065/1‑94 (MQ=60)

                                                                             GTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACCAACTTCG                  >  SRR4302536.6395011/1‑94 (MQ=60)

                                                                             GTACTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCG                  >  SRR4302536.2449155/1‑94 (MQ=60)

                                                                               ACGGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCC                >  SRR4302536.4331817/1‑94 (MQ=60)

                                                                                CTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCT               >  SRR4302536.1709041/1‑94 (MQ=60)

                                                                                CTGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCT               <  SRR4302536.5312775/94‑1 (MQ=60)

                                                                                 TGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTG              <  SRR4302536.3426536/94‑1 (MQ=60)

                                                                                 TGATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTG              <  SRR4302536.1310098/94‑1 (MQ=60)

                                                                                   ATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCT            >  SRR4302536.2918738/1‑94 (MQ=60)

                                                                                   ATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCT            >  SRR4302536.1943041/1‑94 (MQ=60)

                                                                                   ATAACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCT            <  SRR4302536.5968020/94‑1 (MQ=60)

                                                                                     AACGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCA          >  SRR4302536.6798612/1‑94 (MQ=60)

                                                                                       CGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACT        <  SRR4302536.3363972/94‑1 (MQ=60)

                                                                                       CGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACT        >  SRR4302536.5276282/1‑94 (MQ=60)

                                                                                       CGCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACT        <  SRR4302536.1203550/94‑1 (MQ=60)

                                                                                        GCTGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTA       <  SRR4302536.2741937/94‑1 (MQ=60)

                                                                                          TGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCTCAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATG     >  SRR4302536.2817871/1‑94 (MQ=60)

                                                                                          TGGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATG     >  SRR4302536.679316/1‑94 (MQ=60)

                                                                                           GGCGCCATTTCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGC    >  SRR4302536.6735785/1‑94 (MQ=60)

                                                                                           GGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGC    >  SRR4302536.1500113/1‑94 (MQ=60)

                                                                                           GGCGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGC    >  SRR4302536.3052190/1‑94 (MQ=60)

                                                                                             CGCCATTGGCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAG  <  SRR4302536.4892366/94‑1 (MQ=60)

TATCGCTGATGGCGTTAGTCGCCGCAATGCGGCCAAAATCGAAAGGATTATCAACGATCGGCATAAAGAAGTCGGTGGTACTGATAACGCTGGTGCCATTGCCCAGATCGTACACCGCCGCATCGTCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAG  >  NC_000913/1845759‑1845945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`