Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,871,984	A→G	E129E (GAA→GAG)	yeaK →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,871,984	0	A	G	100.0%	833.6 / NA	255	E129E (GAA→GAG)	yeaK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (121/134); total (121/134)

Only 100 of 259 total aligned reads displayed.

CGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA  >  NC_000913/1871894‑1872073

 gATGAACTCACAGGCTGTGTCTTCGGTGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCgt                                                                                        >  1:695077/1‑92 (MQ=255)

 gATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGa                                                                                        <  2:4586666/93‑1 (MQ=255)

  aTGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAt                                                                                       >  2:952252/1‑93 (MQ=255)

  aTGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAt                                                                                       >  2:4115207/1‑93 (MQ=255)

  aTGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAt                                                                                       <  2:489386/93‑1 (MQ=255)

  aTGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAt                                                                                       >  2:1098181/1‑93 (MQ=255)

   tGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAtt                                                                                      >  2:6589999/1‑93 (MQ=255)

    gAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAttt                                                                                     >  2:1943900/1‑93 (MQ=255)

    gAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGATGCCGACCCTCTACTCTTCGAGCGAttt                                                                                     >  2:6133690/1‑93 (MQ=255)

         cacaGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatga                                                                                >  1:4454958/1‑93 (MQ=255)

         cacaGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatga                                                                                <  1:2482641/93‑1 (MQ=255)

           caGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGaaa                                                                              <  2:1820107/93‑1 (MQ=255)

            aGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAAt                                                                             <  1:890481/93‑1 (MQ=255)

            aGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAAt                                                                             <  2:5620300/93‑1 (MQ=255)

                tgtgTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGcc                                                                         <  1:2099281/93‑1 (MQ=255)

                tgtgTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGcc                                                                         >  1:2359349/1‑93 (MQ=255)

                tgtgTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGcc                                                                         >  2:6311449/1‑93 (MQ=255)

                tgtgTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGcc                                                                         <  1:3355213/93‑1 (MQ=255)

                     cTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCaa                                                                    <  1:1749139/93‑1 (MQ=255)

                      ttCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAt                                                                   <  1:5183073/93‑1 (MQ=255)

                      ttCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAt                                                                   <  1:4926519/93‑1 (MQ=255)

                        cGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGc                                                                 <  1:5891747/93‑1 (MQ=255)

                        cGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGc                                                                 >  1:5858792/1‑93 (MQ=255)

                         ggCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCa                                                                >  2:5094036/1‑93 (MQ=255)

                         ggCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCa                                                                >  1:396048/1‑93 (MQ=255)

                         ggCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCa                                                                >  1:1291226/1‑93 (MQ=255)

                          gcgcGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAg                                                               <  2:1741101/93‑1 (MQ=255)

                           ggcgATCCCCCCTTTCAGCTTCCATCCAAATCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAgg                                                              <  1:4447730/92‑1 (MQ=255)

                            gcgATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGc                                                             <  1:3558172/93‑1 (MQ=255)

                            gcgATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGc                                                             <  2:2581963/93‑1 (MQ=255)

                             cgATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCa                                                            <  1:1313067/93‑1 (MQ=255)

                              gATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAt                                                           <  2:711630/93‑1 (MQ=255)

                              gATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAt                                                           >  2:4306161/1‑93 (MQ=255)

                               aTCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAtc                                                          >  2:1428605/1‑92 (MQ=255)

                               aTCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATg                                                          >  1:2056522/1‑93 (MQ=255)

                               aTCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATg                                                          >  1:994795/1‑93 (MQ=255)

                               aTCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATg                                                          <  2:6021324/93‑1 (MQ=255)

                                tCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGc                                                         >  2:2855336/1‑93 (MQ=255)

                                tCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGc                                                         >  1:1832431/1‑93 (MQ=255)

                                accccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGc                                                         <  1:5307093/92‑1 (MQ=255)

                                 ccccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCt                                                        >  2:1345219/1‑93 (MQ=255)

                                 ccccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCt                                                        <  1:2627789/93‑1 (MQ=255)

                                  cccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTg                                                       >  2:2111017/1‑93 (MQ=255)

                                    cccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGa                                                     >  2:2790496/1‑93 (MQ=255)

                                    cccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGa                                                     <  1:4323670/93‑1 (MQ=255)

                                     ccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAt                                                    <  1:6578963/93‑1 (MQ=255)

                                     ccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATAGCCTTCAATGCAGGCATGCTGGaa                                                    >  1:805231/1‑92 (MQ=255)

                                       tttCAGCTTCCATCCAAAACTCAAGCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATaa                                                  <  1:5797250/93‑1 (MQ=255)

                                       tttCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATaa                                                  >  2:1606140/1‑93 (MQ=255)

                                         tCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAAt                                                <  1:3030795/93‑1 (MQ=255)

                                          cAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATc                                               <  2:5303351/93‑1 (MQ=255)

                                            gCTTCCATCCAAAGCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCg                                             <  1:5675538/93‑1 (MQ=255)

                                            gCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCg                                             >  2:3703286/1‑93 (MQ=255)

                                            gCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCg                                             <  2:1269935/93‑1 (MQ=255)

                                            gCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCg                                             <  1:406977/93‑1 (MQ=255)

                                             cTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGt                                            <  1:5427423/93‑1 (MQ=255)

                                              ttCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGtt                                           >  2:5295492/1‑93 (MQ=255)

                                                ccatccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAt                                         <  2:1359531/93‑1 (MQ=255)

                                                ccatccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAt                                         <  2:337577/93‑1 (MQ=255)

                                                 catccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtt                                        >  2:1447926/1‑93 (MQ=255)

                                                  atccaAAACTCAAACTGGTTGTCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAttt                                       >  1:1247827/1‑93 (MQ=255)

                                                  atccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAttt                                       >  1:1002398/1‑93 (MQ=255)

                                                  atccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAttt                                       >  1:4188116/1‑93 (MQ=255)

                                                   tccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtttt                                      <  1:1349464/93‑1 (MQ=255)

                                                   tccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtttt                                      >  1:3724460/1‑93 (MQ=255)

                                                   tccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtttt                                      <  2:3185487/93‑1 (MQ=255)

                                                      aaaaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTgca                                   >  2:6431531/1‑91 (MQ=255)

                                                      aaaaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGaa                                   <  1:2645057/93‑1 (MQ=255)

                                                       aaaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGaaa                                  >  2:4548816/1‑93 (MQ=255)

                                                        aaCTCAAACTGGTTGCCTACCCTCTTCTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGaaaa                                 <  2:2202274/93‑1 (MQ=255)

                                                        aaCTCAAACTGGTTGCCGACCCTCTACTCTTCTAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATCAATCCGTTATTTTGaaaa                                 >  2:2408519/1‑93 (MQ=255)

                                                        aaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGaaaa                                 >  1:5649349/1‑93 (MQ=255)

                                                        aaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGaaaa                                 >  1:1522570/1‑93 (MQ=255)

                                                        aaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGaaaa                                 <  2:4394496/93‑1 (MQ=255)

                                                         aCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAc                                >  2:5477835/1‑93 (MQ=255)

                                                         aCTCAAACTGGTTGCCGACCCTCTACTCTTCCTGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATGAATCCGTTATTTTTAAAAc                                >  2:5860217/1‑93 (MQ=255)

                                                          cTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAcc                               >  2:3577205/1‑93 (MQ=255)

                                                          cTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAcc                               >  1:1624153/1‑93 (MQ=255)

                                                            cAACCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcgc                             <  2:2551668/93‑1 (MQ=255)

                                                            cAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcgc                             <  2:4628621/93‑1 (MQ=255)

                                                            cAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcgc                             >  1:247109/1‑93 (MQ=255)

                                                              aaCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCgg                           >  2:3850399/1‑93 (MQ=255)

                                                                 tGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGatt                        <  2:314772/93‑1 (MQ=255)

                                                                   gTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGattat                      <  2:305722/93‑1 (MQ=255)

                                                                     tGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTAttt                    <  1:3541619/93‑1 (MQ=255)

                                                                      gCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttg                   <  2:4773049/93‑1 (MQ=255)

                                                                      gCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttg                   >  1:3902237/1‑93 (MQ=255)

                                                                       ccGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgc                  <  2:5830068/93‑1 (MQ=255)

                                                                       ccGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgc                  <  1:5049370/93‑1 (MQ=255)

                                                                          aCCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgca               >  1:6269304/1‑93 (MQ=255)

                                                                          aCCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgca               >  1:6215483/1‑93 (MQ=255)

                                                                            ccTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcatt             <  1:3088634/93‑1 (MQ=255)

                                                                              tctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgc           >  2:5716169/1‑93 (MQ=255)

                                                                              tctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgc           <  1:3245110/93‑1 (MQ=255)

                                                                              cctACTCTTCGAGCGATTTGATGAAGTCGCCGTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgc           <  2:1867476/92‑1 (MQ=255)

                                                                                  ctctTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCaa       >  2:4663749/1‑93 (MQ=255)

                                                                                    ctTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAcc     >  2:3436517/1‑93 (MQ=255)

                                                                                      tCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAg   <  1:2884352/93‑1 (MQ=255)

                                                                                       cGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTCTTTGCGCATTGCGCAACCAGa  >  1:6456362/1‑93 (MQ=255)

                                                                                       cGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGa  <  2:851763/93‑1 (MQ=255)

CGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA  >  NC_000913/1871894‑1872073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTG  >  NC_000913/1871891‑1872077

AGTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAG                                                                                               <  SRR4302536.4810091/94‑1 (MQ=60)

  TCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCCGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCG                                                                                             >  SRR4302536.3004185/1‑94 (MQ=60)

  TCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCG                                                                                             <  SRR4302536.712711/94‑1 (MQ=60)

     ATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATT                                                                                          <  SRR4302536.4568467/94‑1 (MQ=60)

     ATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATT                                                                                          >  SRR4302536.3035585/1‑94 (MQ=60)

      TGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTT                                                                                         <  SRR4302536.3655952/94‑1 (MQ=60)

       GAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTG                                                                                        <  SRR4302536.2711773/94‑1 (MQ=60)

         ACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGAT                                                                                      <  SRR4302536.3186774/94‑1 (MQ=60)

           TCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGA                                                                                    >  SRR4302536.4588792/1‑94 (MQ=60)

            CACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAA                                                                                   >  SRR4302536.4129720/1‑94 (MQ=60)

            CACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAA                                                                                   >  SRR4302536.6010616/1‑94 (MQ=60)

            CACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAA                                                                                   <  SRR4302536.2557541/94‑1 (MQ=60)

              CAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAAT                                                                                 <  SRR4302536.5425461/94‑1 (MQ=60)

               AGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATC                                                                                <  SRR4302536.916707/94‑1 (MQ=60)

                GGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCG                                                                               <  SRR4302536.1329907/94‑1 (MQ=60)

                GGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCG                                                                               <  SRR4302536.2151480/94‑1 (MQ=60)

                  CTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCC                                                                             >  SRR4302536.2430863/1‑94 (MQ=60)

                   TGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCT                                                                            >  SRR4302536.1484451/1‑94 (MQ=60)

                   TGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCT                                                                            <  SRR4302536.4026214/94‑1 (MQ=60)

                   TGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCT                                                                            <  SRR4302536.3454783/94‑1 (MQ=60)

                   TGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCT                                                                            <  SRR4302536.2162423/94‑1 (MQ=60)

                    GTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTT                                                                           <  SRR4302536.900224/94‑1 (MQ=60)

                        CTTCGGCGCGCTCCACCCTTGCAGCTCCCATCAAAACCTCAAACTGGTTGCCGTCCCTCTACTCTACGGGCGATTTGATGAAATCGCCTTCAAT                                                                       <  SRR4302536.4125669/94‑1 (MQ=42)

                        CTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAT                                                                       <  SRR4302536.1800326/94‑1 (MQ=60)

                         TTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATG                                                                      <  SRR4302536.5858003/94‑1 (MQ=60)

                         TTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATG                                                                      <  SRR4302536.5337666/94‑1 (MQ=60)

                         TTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATG                                                                      <  SRR4302536.5074546/94‑1 (MQ=60)

                          TCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGC                                                                     >  SRR4302536.3835176/1‑94 (MQ=60)

                          TCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGC                                                                     >  SRR4302536.6033345/1‑94 (MQ=60)

                           cgcctCGATCCCCCCTTGCAGCTTCGATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCA                                                                    <  SRR4302536.3384500/89‑1 (MQ=60)

                           CGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCA                                                                    >  SRR4302536.1329830/1‑94 (MQ=60)

                           CGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCA                                                                    <  SRR4302536.6067196/94‑1 (MQ=60)

                           CGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCA                                                                    <  SRR4302536.6308782/94‑1 (MQ=60)

                           CGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCA                                                                    >  SRR4302536.406526/1‑94 (MQ=60)

                            GGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAG                                                                   <  SRR4302536.2006601/94‑1 (MQ=60)

                            GGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCATCAATGCAG                                                                   <  SRR4302536.6753309/94‑1 (MQ=60)

                             GCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTTCTCTTCGAGCGATTTGATGAAAGCGCCTTCAATGCAGG                                                                  <  SRR4302536.389740/94‑1 (MQ=60)

                             GCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGG                                                                  <  SRR4302536.4525478/94‑1 (MQ=60)

                              GGCGATCCCCCCTTTCAGCTTCCATCCAAATCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGC                                                                 <  SRR4302536.4581295/94‑1 (MQ=60)

                               GCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCA                                                                <  SRR4302536.3664572/94‑1 (MQ=60)

                               GCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCACGCA                                                                >  SRR4302536.1994880/1‑94 (MQ=60)

                                CGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAT                                                               <  SRR4302536.1352262/94‑1 (MQ=60)

                                 GATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATG                                                              >  SRR4302536.1024148/1‑94 (MQ=60)

                                 GATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATG                                                              <  SRR4302536.81617/94‑1 (MQ=60)

                                 GATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATG                                                              >  SRR4302536.2118457/1‑94 (MQ=60)

                                  ATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGC                                                             >  SRR4302536.6401105/1‑94 (MQ=60)

                                  ATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGC                                                             >  SRR4302536.1887673/1‑94 (MQ=60)

                                   TCCCCCCTTTCAGCTTCCATCCAAACCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCT                                                            <  SRR4302536.2420543/94‑1 (MQ=60)

                                   ACCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCT                                                            <  SRR4302536.5465474/94‑1 (MQ=60)

                                    CCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTG                                                           <  SRR4302536.2706578/94‑1 (MQ=60)

                                     CCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGG                                                          >  SRR4302536.1295816/1‑94 (MQ=60)

                                      CCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGA                                                         >  SRR4302536.18081/1‑94 (MQ=60)

                                       CCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAT                                                        <  SRR4302536.4453141/94‑1 (MQ=60)

                                       CCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAT                                                        >  SRR4302536.6519381/1‑94 (MQ=60)

                                       CCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATAGCCTTCAATGCAGGCATGCTGGAA                                                        >  SRR4302536.828847/1‑94 (MQ=60)

                                        CCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATA                                                       >  SRR4302536.587594/1‑94 (MQ=60)

                                        CCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATA                                                       <  SRR4302536.6774737/94‑1 (MQ=60)

                                         CTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAA                                                      <  SRR4302536.4436833/94‑1 (MQ=60)

                                         CTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAA                                                      >  SRR4302536.2839901/1‑94 (MQ=60)

                                          TTTCAGCTTCCATCCAAAACTCAAGCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAA                                                     <  SRR4302536.5969861/94‑1 (MQ=60)

                                           TTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAAT                                                    <  SRR4302536.940873/94‑1 (MQ=60)

                                           TTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAAT                                                    >  SRR4302536.2958190/1‑94 (MQ=60)

                                            TCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATC                                                   <  SRR4302536.3119853/94‑1 (MQ=60)

                                               GCTTCCATCCAAAGCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGT                                                <  SRR4302536.5844269/94‑1 (MQ=60)

                                               GCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGT                                                <  SRR4302536.417717/94‑1 (MQ=60)

                                                CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT                                               <  SRR4302536.1298200/94‑1 (MQ=60)

                                                CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT                                               >  SRR4302536.5806020/1‑94 (MQ=60)

                                                CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT                                               <  SRR4302536.5589689/94‑1 (MQ=60)

                                                 TTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTA                                              >  SRR4302536.384142/1‑94 (MQ=60)

                                                  TCCACCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAT                                             <  SRR4302536.1271936/94‑1 (MQ=60)

                                                    CATCCAAAACTCAAACTGGTTGTCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTT                                           >  SRR4302536.1285282/1‑94 (MQ=60)

                                                    CATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTT                                           >  SRR4302536.1031979/1‑94 (MQ=60)

                                                    CATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTT                                           >  SRR4302536.3156927/1‑94 (MQ=60)

                                                    CATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTT                                           >  SRR4302536.4312566/1‑94 (MQ=60)

                                                     ATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTT                                          <  SRR4302536.3593976/94‑1 (MQ=60)

                                                     ATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTT                                          >  SRR4302536.3835786/1‑94 (MQ=60)

                                                     ATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTT                                          <  SRR4302536.163573/94‑1 (MQ=60)

                                                      TCCAAAACTCAACCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTG                                         <  SRR4302536.5045450/94‑1 (MQ=60)

                                                      TCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTG                                         <  SRR4302536.1389714/94‑1 (MQ=60)

                                                       CCAAGACTCAACCAGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAACTCGCCTTCACTGCAGGCATGCTGGATAAATCCGTTATTTTGA                                        <  SRR4302536.2547995/94‑1 (MQ=60)

                                                       CCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGA                                        >  SRR4302536.5995660/1‑94 (MQ=60)

                                                         AAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAA                                      <  SRR4302536.2724315/94‑1 (MQ=60)

                                                          AAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAA                                     >  SRR4302536.5817216/1‑94 (MQ=60)

                                                          AAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAA                                     >  SRR4302536.2675102/1‑94 (MQ=60)

                                                          AAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAA                                     >  SRR4302536.1567377/1‑94 (MQ=60)

                                                           AACTCAAACTGGTTGCCGCTCCTCTTCTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCTTTATTTTGAAAAC                                    <  SRR4302536.4256919/94‑1 (MQ=60)

                                                           AACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAC                                    >  SRR4302536.5341950/1‑94 (MQ=60)

                                                           AACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAC                                    <  SRR4302536.73337/94‑1 (MQ=60)

                                                           AACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAC                                    <  SRR4302536.929744/94‑1 (MQ=60)

                                                            ACTGAATCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACC                                   <  SRR4302536.166270/94‑1 (MQ=60)

                                                            ACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACC                                   >  SRR4302536.1671450/1‑94 (MQ=60)

                                                             CTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCG                                  >  SRR4302536.5237648/1‑94 (MQ=60)

                                                             CTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCG                                  <  SRR4302536.1749217/94‑1 (MQ=60)

                                                              TCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGC                                 >  SRR4302536.253695/1‑94 (MQ=60)

                                                                   CTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATT                            <  SRR4302536.6505194/94‑1 (MQ=60)

                                                                   ATGGTTTCCGACCCTCTGCTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCGTGCTGGATAAATCCGTTATTTTGAAAACCGCGGATT                            <  SRR4302536.698796/94‑1 (MQ=60)

                                                                     GGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTAT                          >  SRR4302536.692916/1‑94 (MQ=60)

                                                                      GTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATT                         >  SRR4302536.5154554/1‑94 (MQ=60)

                                                                       TTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTT                        <  SRR4302536.3817546/94‑1 (MQ=60)

                                                                       TTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTT                        <  SRR4302536.3092694/94‑1 (MQ=60)

                                                                        TGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTG                       <  SRR4302536.5818771/94‑1 (MQ=60)

                                                                        TGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTG                       <  SRR4302536.1679946/94‑1 (MQ=60)

                                                                        TGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTG                       >  SRR4302536.4018238/1‑94 (MQ=60)

                                                                        TGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTG                       <  SRR4302536.3647516/94‑1 (MQ=60)

                                                                         GCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGC                      <  SRR4302536.1361762/94‑1 (MQ=60)

                                                                          CCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCG                     <  SRR4302536.4798215/94‑1 (MQ=60)

                                                                          CCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCG                     <  SRR4302536.5200675/94‑1 (MQ=60)

                                                                            gtcctTCTACTCTTCGAGCGATTGGATGAACTCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTAAAAAACCGCGGATTATTTGGGCA                   <  SRR4302536.444319/89‑1 (MQ=60)

                                                                            GACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCA                   >  SRR4302536.6400681/1‑94 (MQ=60)

                                                                            GACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCA                   >  SRR4302536.6456084/1‑94 (MQ=60)

                                                                               CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG                >  SRR4302536.2479963/1‑94 (MQ=60)

                                                                               CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG                <  SRR4302536.3178948/94‑1 (MQ=60)

                                                                                CTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGC               >  SRR4302536.4587672/1‑94 (MQ=60)

                                                                                 TCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCG              <  SRR4302536.3201935/94‑1 (MQ=60)

                                                                                 TCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCG              <  SRR4302536.2481490/94‑1 (MQ=60)

                                                                                 TCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCG              >  SRR4302536.6373815/1‑94 (MQ=60)

                                                                                 TCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCG              <  SRR4302536.3340215/94‑1 (MQ=60)

                                                                                 TCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCG              <  SRR4302536.4400374/94‑1 (MQ=60)

                                                                                  CTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGC             <  SRR4302536.5482103/94‑1 (MQ=60)

                                                                                  CTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGC             >  SRR4302536.3372222/1‑94 (MQ=60)

                                                                                   TACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCA            >  SRR4302536.5739187/1‑94 (MQ=60)

                                                                                      TCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACC         >  SRR4302536.2278481/1‑94 (MQ=60)

                                                                                       CTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCA        <  SRR4302536.524930/94‑1 (MQ=60)

                                                                                       CTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCA        >  SRR4302536.603820/1‑94 (MQ=60)

                                                                                         TCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTCTTTGCGCATTGCGCAACCAGA      >  SRR4302536.6649151/1‑94 (MQ=60)

                                                                                         TCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA      <  SRR4302536.2969462/94‑1 (MQ=60)

                                                                                         TCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA      >  SRR4302536.1381239/1‑94 (MQ=60)

                                                                                         TCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA      >  SRR4302536.2669659/1‑94 (MQ=60)

                                                                                         TCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA      <  SRR4302536.3581800/94‑1 (MQ=60)

                                                                                           GAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAAC    <  SRR4302536.76288/94‑1 (MQ=60)

                                                                                            AGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACT   >  SRR4302536.5333482/1‑94 (MQ=60)

                                                                                             GCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTG  >  SRR4302536.658868/1‑94 (MQ=60)

                                                                                             GCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTG  >  SRR4302536.4945121/1‑94 (MQ=60)

AGTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTG  >  NC_000913/1871891‑1872077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`