Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,909,255	T→C	V319A (GTG→GCG)	b1828 →	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,909,255	0	T	C	99.5%	667.3 / ‑5.1	208	V319A (GTG→GCG)	b1828	putative transport protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (112/95); minor base A (0/1); total (112/96)
Fisher's exact test for biased strand distribution p-value = 4.62e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

Only 100 of 218 total aligned reads displayed.

TTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTT  >  NC_000913/1909165‑1909344

tttCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGa                                                                                         >  2:561935/1‑93 (MQ=255)

     cTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAAcgatggcgatggat                                                                                    >  2:6278558/1‑91 (MQ=255)

     cTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCt                                                                                    >  1:5872312/1‑93 (MQ=255)

     cTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCt                                                                                    >  2:4101364/1‑93 (MQ=255)

         ccTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGc                                                                                >  2:4298941/1‑93 (MQ=255)

         ccTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGc                                                                                >  1:2490741/1‑93 (MQ=255)

          cTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCt                                                                               >  1:1057994/1‑93 (MQ=255)

          cTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCt                                                                               >  2:336554/1‑93 (MQ=255)

          cTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCt                                                                               >  2:3728412/1‑93 (MQ=255)

          cTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCt                                                                               >  2:4605587/1‑93 (MQ=255)

          cTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCt                                                                               >  2:6231105/1‑93 (MQ=255)

           ttttACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTg                                                                              >  2:6423842/1‑93 (MQ=255)

             ttACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGc                                                                            >  1:141306/1‑93 (MQ=255)

              tACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCa                                                                           <  1:4297351/93‑1 (MQ=255)

               aCCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAg                                                                          >  1:6197938/1‑93 (MQ=255)

                ccTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAgg                                                                         <  2:3455450/93‑1 (MQ=255)

                 cTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGc                                                                        <  1:1561881/93‑1 (MQ=255)

                  tGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCt                                                                       <  1:6113116/93‑1 (MQ=255)

                   gCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTa                                                                      <  2:1864912/93‑1 (MQ=255)

                     aaaCCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATTGCGATGGCTCCGCTGGCAGGCTAtt                                                                    >  1:5180196/1‑93 (MQ=255)

                     aaaCCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTAtt                                                                    <  1:6434084/93‑1 (MQ=255)

                     aaaCCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTAtt                                                                    >  2:1426045/1‑93 (MQ=255)

                      aaCCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTAttt                                                                   >  2:6472062/1‑93 (MQ=255)

                      aaCCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTAttt                                                                   >  1:5645059/1‑93 (MQ=255)

                       aCCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATttg                                                                  >  1:4725898/1‑93 (MQ=255)

                       aCCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATttg                                                                  >  1:5760885/1‑93 (MQ=255)

                         cGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCGGGCTATttgat                                                                <  1:2207953/93‑1 (MQ=255)

                         cGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATttgat                                                                >  1:1662618/1‑93 (MQ=255)

                          gTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATttgatt                                                               >  2:3029049/1‑93 (MQ=255)

                          gTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATttgatt                                                               <  2:267926/93‑1 (MQ=255)

                          gTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATttgatt                                                               >  1:2782805/1‑93 (MQ=255)

                            gCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATttgattga                                                             <  2:1356210/93‑1 (MQ=255)

                            gCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATttgattga                                                             <  1:5132684/93‑1 (MQ=255)

                             cTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGaa                                                            <  2:1971370/93‑1 (MQ=255)

                             cTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGaa                                                            <  2:6639868/93‑1 (MQ=255)

                             cTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGaa                                                            <  2:4454970/93‑1 (MQ=255)

                             cTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGaa                                                            <  2:5046282/93‑1 (MQ=255)

                              tCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAAc                                                           <  2:3825943/93‑1 (MQ=255)

                               cGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAAcg                                                          <  2:5752403/93‑1 (MQ=255)

                                   cGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTa                                                      <  1:3117490/93‑1 (MQ=255)

                                    gTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTAc                                                     >  1:1953935/1‑93 (MQ=255)

                                     tAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACa                                                    >  1:779470/1‑93 (MQ=255)

                                     tAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACa                                                    >  1:2444311/1‑93 (MQ=255)

                                       gTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATg                                                  >  2:70866/1‑93 (MQ=255)

                                          aaGTCGAAACAGGTTTAGTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGGAg                                               >  1:3643208/1‑93 (MQ=255)

                                          aaGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATTCAg                                               >  1:6527494/1‑93 (MQ=255)

                                          aaGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAg                                               <  1:1779413/93‑1 (MQ=255)

                                          aaGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAg                                               <  2:1107384/93‑1 (MQ=255)

                                          aaGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAg                                               >  2:2804760/1‑93 (MQ=255)

                                          aaGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAg                                               <  2:2199211/93‑1 (MQ=255)

                                            gTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGa                                             >  1:3238336/1‑93 (MQ=255)

                                            gTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGa                                             >  2:2832166/1‑93 (MQ=255)

                                            atCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGa                                             <  2:3340157/92‑1 (MQ=255)

                                              cGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGGTTGAACGCGTACATGCAGGAtt                                           >  2:3136515/1‑93 (MQ=255)

                                              cGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGAtt                                           <  1:4612053/93‑1 (MQ=255)

                                               gAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTg                                          >  1:2010384/1‑93 (MQ=255)

                                                 aaCAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCt                                        <  1:1898440/93‑1 (MQ=255)

                                                  aCAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTg                                       >  1:3400484/1‑93 (MQ=255)

                                                    aGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTggg                                     >  1:4984815/1‑93 (MQ=255)

                                                     ggTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTgggg                                    <  2:4804401/93‑1 (MQ=255)

                                                        ttACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCt                                 <  2:6147174/93‑1 (MQ=255)

                                                         tACTTCTGACACCGTGGCCGTTAGCAATGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCtt                                <  1:3012372/93‑1 (MQ=255)

                                                          aCTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCttt                               >  1:2601275/1‑93 (MQ=255)

                                                             tCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAgg                            <  1:5978124/93‑1 (MQ=255)

                                                             tCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAgg                            >  2:3259040/1‑93 (MQ=255)

                                                               tGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGgt                          <  1:4651236/93‑1 (MQ=255)

                                                                gACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGgtt                         >  1:3794165/1‑93 (MQ=255)

                                                                gACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGgtt                         <  1:4376034/93‑1 (MQ=255)

                                                                 acacCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGgttg                        <  1:4246361/93‑1 (MQ=255)

                                                                  cacCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGgttgt                       <  1:4990024/93‑1 (MQ=255)

                                                                  cacCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGgttgt                       >  1:3973732/1‑93 (MQ=255)

                                                                   acCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGgttgtt                      >  1:5416199/1‑93 (MQ=255)

                                                                   acCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGgttgtt                      >  2:3547224/1‑93 (MQ=255)

                                                                    ccGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTtc                     >  2:516263/1‑93 (MQ=255)

                                                                       tGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTtcatc                  >  2:656797/1‑93 (MQ=255)

                                                                       tGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTtcatc                  >  2:1725690/1‑93 (MQ=255)

                                                                        ggCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTCGGGTTGTtcatca                 >  1:6663282/1‑93 (MQ=255)

                                                                        ggCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTtcatca                 >  1:6400414/1‑93 (MQ=255)

                                                                         gCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTcatcat                >  2:6365324/1‑93 (MQ=255)

                                                                         gCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTcatcat                <  2:6095007/93‑1 (MQ=255)

                                                                         gCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTcatcat                >  1:3376138/1‑93 (MQ=255)

                                                                          ccGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATg               <  1:3166270/93‑1 (MQ=255)

                                                                            gTTAGCAACGATGGCGATGTCTCCGCTGGCAGGCTATTTGATTGACCGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGc             <  1:1237397/93‑1 (MQ=255)

                                                                            gTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGc             <  1:1808930/93‑1 (MQ=255)

                                                                            gTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGc             >  2:1188656/1‑93 (MQ=255)

                                                                            gTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGc             <  2:5720515/93‑1 (MQ=255)

                                                                            gTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGc             >  2:3994883/1‑93 (MQ=255)

                                                                             ttAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCt            >  2:233255/1‑93 (MQ=255)

                                                                             ttAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGGTGTTCATCATGGCt            >  2:6196919/1‑93 (MQ=255)

                                                                                gCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCg         <  1:321881/93‑1 (MQ=255)

                                                                                  aaCGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCggg       <  2:3762954/93‑1 (MQ=255)

                                                                                  aaCGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCggg       >  1:2924237/1‑93 (MQ=255)

                                                                                   aCGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCgggg      >  2:1072643/1‑93 (MQ=255)

                                                                                   aCGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCgggg      >  1:6627760/1‑93 (MQ=255)

                                                                                    cgatggcgatggCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGc     >  1:143698/1‑93 (MQ=255)

                                                                                      aTGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCtt   <  2:1839599/93‑1 (MQ=255)

                                                                                      aTGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCtt   <  2:2769268/93‑1 (MQ=255)

                                                                                      aTGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCtt   <  2:5290807/93‑1 (MQ=255)

                                                                                       tGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCttt  <  1:1847/93‑1 (MQ=255)

                                                                                       tGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCttt  <  2:433017/93‑1 (MQ=255)

TTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTT  >  NC_000913/1909165‑1909344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTC  >  NC_000913/1909164‑1909348

GTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGA                                                                                             <  SRR4302536.1388887/94‑1 (MQ=60)

   TCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGG                                                                                          <  SRR4302536.5753451/94‑1 (MQ=60)

     CCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCT                                                                                        >  SRR4302536.6047274/1‑94 (MQ=60)

      CTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTC                                                                                       >  SRR4302536.2663299/1‑94 (MQ=60)

      CTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTC                                                                                       <  SRR4302536.3394922/94‑1 (MQ=60)

       TGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCC                                                                                      <  SRR4302536.268067/94‑1 (MQ=60)

         CCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGC                                                                                    <  SRR4302536.2524231/94‑1 (MQ=60)

         CCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGC                                                                                    >  SRR4302536.2565878/1‑94 (MQ=60)

          CCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCT                                                                                   >  SRR4302536.1089631/1‑94 (MQ=60)

           CTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTG                                                                                  >  SRR4302536.6902032/1‑94 (MQ=60)

             TTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGC                                                                                >  SRR4302536.144986/1‑94 (MQ=60)

               TACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAG                                                                              <  SRR4302536.4425797/94‑1 (MQ=60)

               TACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAG                                                                              >  SRR4302536.6382547/1‑94 (MQ=60)

                 CCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGC                                                                            <  SRR4302536.1785011/94‑1 (MQ=60)

                  CTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCT                                                                           <  SRR4302536.1607750/94‑1 (MQ=60)

                  CTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCT                                                                           <  SRR4302536.6130238/94‑1 (MQ=60)

                  CTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCT                                                                           <  SRR4302536.3227533/94‑1 (MQ=60)

                  CTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCT                                                                           <  SRR4302536.701909/94‑1 (MQ=60)

                  CTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGAGATGGCTCCGATGGCAGGCT                                                                           <  SRR4302536.6709437/94‑1 (MQ=60)

                   TGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTA                                                                          <  SRR4302536.6295323/94‑1 (MQ=60)

                     CAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATTGCGATGGCTCCGCTGGCAGGCTATT                                                                        >  SRR4302536.5334720/1‑94 (MQ=60)

                      AAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTT                                                                       >  SRR4302536.5812788/1‑94 (MQ=60)

                      AAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTT                                                                       <  SRR4302536.6626384/94‑1 (MQ=60)

                       AACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTG                                                                      >  SRR4302536.305953/1‑94 (MQ=60)

                       AACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTG                                                                      >  SRR4302536.5932257/1‑94 (MQ=60)

                       AACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTG                                                                      >  SRR4302536.4868086/1‑94 (MQ=60)

                         CCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGAT                                                                    >  SRR4302536.1710871/1‑94 (MQ=60)

                          CGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCGGGCTATTTGATT                                                                   <  SRR4302536.2274621/94‑1 (MQ=60)

                          CGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATT                                                                   >  SRR4302536.2865469/1‑94 (MQ=60)

                          CGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATT                                                                   <  SRR4302536.4107152/94‑1 (MQ=60)

                           GTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTG                                                                  >  SRR4302536.5135338/1‑94 (MQ=60)

                           GTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTG                                                                  >  SRR4302536.1931733/1‑94 (MQ=60)

                           GTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTG                                                                  <  SRR4302536.1457044/94‑1 (MQ=60)

                           GTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTA                                                                  >  SRR4302536.479214/1‑94 (MQ=60)

                            TGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGA                                                                 <  SRR4302536.4179535/94‑1 (MQ=60)

                             GCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAA                                                                <  SRR4302536.5285969/94‑1 (MQ=60)

                                CGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACCATGGCGATGGCTCAGCTGGCAGGCTATTTGATTGAACGC                                                             >  SRR4302536.4072146/1‑94 (MQ=60)

                                    CGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTAC                                                         >  SRR4302536.4765859/1‑94 (MQ=60)

                                    CGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTAC                                                         >  SRR4302536.2012692/1‑94 (MQ=60)

                                    CGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTAC                                                         <  SRR4302536.3208558/94‑1 (MQ=60)

                                     GTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACA                                                        >  SRR4302536.2518177/1‑94 (MQ=60)

                                     GTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACA                                                        >  SRR4302536.3713389/1‑94 (MQ=60)

                                     GTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACA                                                        >  SRR4302536.802309/1‑94 (MQ=60)

                                      TAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACAT                                                       <  SRR4302536.1821453/94‑1 (MQ=60)

                                      TAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACAT                                                       <  SRR4302536.3170188/94‑1 (MQ=60)

                                       AGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATG                                                      >  SRR4302536.5328177/1‑94 (MQ=60)

                                       AGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATG                                                      <  SRR4302536.6422666/94‑1 (MQ=60)

                                       AGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAAAGCGTACATG                                                      >  SRR4302536.1679653/1‑94 (MQ=60)

                                          GAAGTCGAAACAGGTTTAGTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGGAG                                                   >  SRR4302536.3752139/1‑94 (MQ=60)

                                          GAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATTCAG                                                   >  SRR4302536.6721913/1‑94 (MQ=60)

                                          GAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAG                                                   <  SRR4302536.6187724/94‑1 (MQ=60)

                                          GAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAG                                                   <  SRR4302536.2041137/94‑1 (MQ=60)

                                           AAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGG                                                  <  SRR4302536.1833211/94‑1 (MQ=60)

                                           AAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGG                                                  >  SRR4302536.4386945/1‑94 (MQ=60)

                                           AAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGG                                                  >  SRR4302536.2487910/1‑94 (MQ=60)

                                            AGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGA                                                 >  SRR4302536.3333249/1‑94 (MQ=60)

                                              TCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATT                                               <  SRR4302536.3322895/94‑1 (MQ=60)

                                               CGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTG                                              <  SRR4302536.4750593/94‑1 (MQ=60)

                                               CGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTG                                              >  SRR4302536.2070883/1‑94 (MQ=60)

                                                GAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGC                                             <  SRR4302536.1497094/94‑1 (MQ=60)

                                                 AAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCT                                            >  SRR4302536.1846490/1‑94 (MQ=60)

                                                 AAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCT                                            >  SRR4302536.4466854/1‑94 (MQ=60)

                                                 AAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCT                                            >  SRR4302536.6303617/1‑94 (MQ=60)

                                                  AACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTG                                           <  SRR4302536.1955612/94‑1 (MQ=60)

                                                  AACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTG                                           >  SRR4302536.3501620/1‑94 (MQ=60)

                                                  AACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTG                                           >  SRR4302536.569410/1‑94 (MQ=60)

                                                    CAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGG                                         <  SRR4302536.5337674/94‑1 (MQ=60)

                                                    CAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGG                                         >  SRR4302536.5134491/1‑94 (MQ=60)

                                                      GGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGG                                       <  SRR4302536.3307103/94‑1 (MQ=60)

                                                          TACTTCTGACACCGTGGCCGTTAGCAATGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTT                                   <  SRR4302536.3100916/94‑1 (MQ=60)

                                                          TACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTT                                   >  SRR4302536.2679375/1‑94 (MQ=60)

                                                          TACTTCTGACACCGTGGCCGTCAGCAGCGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTT                                   <  SRR4302536.1668856/94‑1 (MQ=60)

                                                           ACTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTA                                  <  SRR4302536.662026/94‑1 (MQ=60)

                                                            CTTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAG                                 <  SRR4302536.2103319/94‑1 (MQ=60)

                                                             TTCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGG                                <  SRR4302536.1900069/94‑1 (MQ=60)

                                                              TCTGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGG                               <  SRR4302536.6156374/94‑1 (MQ=60)

                                                                TGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTT                             <  SRR4302536.1217807/94‑1 (MQ=60)

                                                                TGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTT                             >  SRR4302536.4534278/1‑94 (MQ=60)

                                                                TGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTT                             >  SRR4302536.3907342/1‑94 (MQ=60)

                                                                TGACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTT                             <  SRR4302536.4791074/94‑1 (MQ=60)

                                                                 GACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTG                            <  SRR4302536.4506712/94‑1 (MQ=60)

                                                                 GACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCGTTAGGGTTG                            <  SRR4302536.6748842/94‑1 (MQ=60)

                                                                  ACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGT                           <  SRR4302536.4372835/94‑1 (MQ=60)

                                                                  ACACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGT                           >  SRR4302536.4091685/1‑94 (MQ=60)

                                                                   CACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTT                          >  SRR4302536.5578076/1‑94 (MQ=60)

                                                                   CACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTT                          >  SRR4302536.1005619/1‑94 (MQ=60)

                                                                   CACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTT                          <  SRR4302536.5139802/94‑1 (MQ=60)

                                                                   CACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTT                          <  SRR4302536.3463818/94‑1 (MQ=60)

                                                                    ACCGTGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTC                         >  SRR4302536.4957325/1‑94 (MQ=60)

                                                                        TGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTCGGGTTGTTCATCA                     >  SRR4302536.6861313/1‑94 (MQ=60)

                                                                        TGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCA                     >  SRR4302536.6591443/1‑94 (MQ=60)

                                                                        TGGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCA                     >  SRR4302536.6010826/1‑94 (MQ=60)

                                                                         GGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCAT                    <  SRR4302536.5171544/94‑1 (MQ=60)

                                                                         GGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCAT                    <  SRR4302536.2204543/94‑1 (MQ=60)

                                                                         GGCCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCAT                    >  SRR4302536.3476449/1‑94 (MQ=60)

                                                                         GGCCGTTAGCAACGATGCCGAAGGCTCCGCTGGTCGGCTATTTGCTTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGcacttcctcac                    >  SRR4302536.1682665/1‑83 (MQ=60)

                                                                          GCCGTTAGCATCGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCCTACATGCAGGATTGCTGGGGACTTTAGGGGTGTTCATCATG                   <  SRR4302536.1474244/94‑1 (MQ=60)

                                                                           CCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGG                  <  SRR4302536.3259031/94‑1 (MQ=60)

                                                                           CCGTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCCTTAGGGTTGTTCATCATGG                  >  SRR4302536.5831970/1‑94 (MQ=60)

                                                                             GTTAGCAACGATGGCGATGTCTCCGCTGGCAGGCTATTTGATTGACCGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCT                <  SRR4302536.1274554/94‑1 (MQ=60)

                                                                             GTTAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCT                <  SRR4302536.1863508/94‑1 (MQ=60)

                                                                               TAGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGC              <  SRR4302536.6846486/94‑1 (MQ=60)

                                                                                AGCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCG             <  SRR4302536.2952993/94‑1 (MQ=60)

                                                                                 GCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGG            <  SRR4302536.330415/94‑1 (MQ=60)

                                                                                 GCAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGG            >  SRR4302536.3766580/1‑94 (MQ=60)

                                                                                  GAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGG           <  SRR4302536.6386880/94‑1 (MQ=60)

                                                                                  CAACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGG           >  SRR4302536.3010521/1‑94 (MQ=60)

                                                                                   AACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGG          >  SRR4302536.1427419/1‑94 (MQ=60)

                                                                                   AACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGG          >  SRR4302536.6824893/1‑94 (MQ=60)

                                                                                   AACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGG          >  SRR4302536.1993462/1‑94 (MQ=60)

                                                                                   AACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGG          >  SRR4302536.5121892/1‑94 (MQ=60)

                                                                                    ACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGC         >  SRR4302536.147443/1‑94 (MQ=60)

                                                                                    ACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGC         <  SRR4302536.2949855/94‑1 (MQ=60)

                                                                                    ACGATGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGC         <  SRR4302536.3487829/94‑1 (MQ=60)

                                                                                       ATGGAGATCGCTCCGCTGGCAGGCTATTTGATTGAACGCGTCCATGCAGGATTGCTGGGGGCTTTAGGGCTGTTCCTCATGGCTGCGGGGCATT      >  SRR4302536.2112957/1‑94 (MQ=60)

                                                                                        TGGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTT     <  SRR4302536.1898/94‑1 (MQ=60)

                                                                                         GGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTT    <  SRR4302536.102286/94‑1 (MQ=60)

                                                                                         GGCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTT    >  SRR4302536.177434/1‑94 (MQ=60)

                                                                                          GCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTT   >  SRR4302536.6448022/1‑94 (MQ=60)

                                                                                          GCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTT   <  SRR4302536.516610/94‑1 (MQ=60)

                                                                                          GCGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTT   <  SRR4302536.856541/94‑1 (MQ=60)

                                                                                           CGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTC  >  SRR4302536.255041/1‑94 (MQ=60)

                                                                                           CGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTC  <  SRR4302536.220628/94‑1 (MQ=60)

GTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCGTGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTC  >  NC_000913/1909164‑1909348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`