Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,917,590 |
T→C |
V688A (GTC→GCC) |
b1834 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,917,590 | 0 | T | C | 99.1%
| 341.1
/ NA
| 107 | V688A (GTC→GCC) | b1834 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (54/52); total (54/53) |
| Fisher's exact test for biased strand distribution p-value = 4.95e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 110 total aligned reads displayed.
TCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTC > NC_000913/1917500‑1917678
|
tcGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGccc < 1:150893/93‑1 (MQ=255)
cGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCa > 2:1984210/1‑93 (MQ=255)
aTTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGAcc > 2:2331905/1‑93 (MQ=255)
aTTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGAcc > 1:2168735/1‑93 (MQ=255)
ttGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCt > 2:4080007/1‑93 (MQ=255)
tGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCtt < 1:786196/93‑1 (MQ=255)
tGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCtt < 1:3787591/93‑1 (MQ=255)
tGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCtt < 2:915996/93‑1 (MQ=255)
tGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCtt < 2:692493/93‑1 (MQ=255)
tGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCtt < 2:692494/93‑1 (MQ=255)
tGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCtt > 1:2404153/1‑93 (MQ=255)
atatCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTg < 1:1034333/93‑1 (MQ=255)
atatCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTg > 1:338012/1‑93 (MQ=255)
cGGGCAAATCCAGACGCTGTATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTcg > 2:2199493/1‑93 (MQ=255)
cGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTcg < 2:1498638/93‑1 (MQ=255)
ggCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTcgcg > 1:2934711/1‑93 (MQ=255)
ggCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTcgcg > 2:3121659/1‑93 (MQ=255)
ggCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTcgcg < 1:1828057/93‑1 (MQ=255)
cAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATNNGCCCAGACCTTTGCTCGCngg > 1:753188/1‑92 (MQ=255)
aaaTCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggtg < 2:1512132/93‑1 (MQ=255)
aaaTCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggtg > 1:4221134/1‑93 (MQ=255)
aaaTCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggtg > 2:3386557/1‑93 (MQ=255)
aTCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggtggt < 2:3558430/93‑1 (MQ=255)
tCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTa < 2:2559521/93‑1 (MQ=255)
tCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTa < 1:2766857/93‑1 (MQ=255)
cAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAcg > 2:3059382/1‑93 (MQ=255)
aGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAcgc < 1:4564579/93‑1 (MQ=255)
aGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAcgc < 2:194271/93‑1 (MQ=255)
aGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAcgc < 2:4563281/93‑1 (MQ=255)
gCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCtt > 1:679492/1‑93 (MQ=255)
gCTGGATCTGATTACCGCACGCAATGAAGGACAGGCAAAGGCGGTACTTTACCAGGAATATGCGCAGACCTTTGCTCGCGGTGGTACGCGCtt > 1:679489/1‑93 (MQ=255)
cTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTtc < 2:575697/93‑1 (MQ=255)
cTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGCACGCGCTtc > 1:3766723/1‑93 (MQ=255)
tGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTtct < 2:4509834/93‑1 (MQ=255)
tGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTtct > 1:4576888/1‑93 (MQ=255)
tgATCTTATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTGCCCGGAATATGCCCAAACCTTTGCTCGCGGTGGTACTCGCTtctc < 2:3322777/92‑1 (MQ=255)
ggATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTtctc > 2:446076/1‑93 (MQ=255)
ggATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTtctc < 1:2558084/93‑1 (MQ=255)
ggATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGGGGTACGCGCTtctc > 2:2669303/1‑93 (MQ=255)
aTCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAg < 1:4005657/93‑1 (MQ=255)
aTCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAg < 2:4388706/93‑1 (MQ=255)
tCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGt < 2:813619/93‑1 (MQ=255)
tCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGt < 1:3112207/93‑1 (MQ=255)
cTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTg < 1:2188193/93‑1 (MQ=255)
tGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTgg < 2:991854/93‑1 (MQ=255)
tGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTgg > 1:2430611/1‑93 (MQ=255)
gATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGt < 2:777630/93‑1 (MQ=255)
ttACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTca < 2:4372681/93‑1 (MQ=255)
ttACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTca > 1:500019/1‑93 (MQ=255)
aCCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTcaca < 2:1061932/93‑1 (MQ=255)
ccGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCacac < 2:3621135/93‑1 (MQ=255)
cgcacgcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACAcc < 2:1268219/93‑1 (MQ=255)
cgcacgcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACAcc > 2:2981858/1‑93 (MQ=255)
acgcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCa > 2:3874296/1‑93 (MQ=255)
acgcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCa > 1:1690461/1‑93 (MQ=255)
gcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCaca > 2:302990/1‑91 (MQ=255)
gcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCaaa > 2:4567328/1‑93 (MQ=255)
gcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCaaa < 2:3511589/93‑1 (MQ=255)
gcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCaaa > 1:257609/1‑93 (MQ=255)
gcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCaaa < 1:3607909/93‑1 (MQ=255)
gcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCaaa > 1:3809059/1‑93 (MQ=255)
caATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAt > 1:1750539/1‑93 (MQ=255)
aaTGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAtt > 2:2813786/1‑93 (MQ=255)
aaTGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAtt < 1:2016020/93‑1 (MQ=255)
cAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCt > 1:265180/1‑93 (MQ=255)
cAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCt < 1:1950024/93‑1 (MQ=255)
aGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTg > 1:4394757/1‑93 (MQ=255)
aGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTg < 2:3758151/93‑1 (MQ=255)
aGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTg > 1:1307630/1‑93 (MQ=255)
ggCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTgg < 2:429209/93‑1 (MQ=255)
aaGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGtt < 2:2769521/93‑1 (MQ=255)
aaGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGtt > 2:2085744/1‑93 (MQ=255)
aGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTg < 2:1839799/93‑1 (MQ=255)
ggCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGa < 1:3312383/93‑1 (MQ=255)
gCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAg < 1:1109152/93‑1 (MQ=255)
ggTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCa < 1:4054427/93‑1 (MQ=255)
gTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCAt > 2:3826391/1‑93 (MQ=255)
tACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATc > 1:1150096/1‑93 (MQ=255)
tACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATc > 1:1874468/1‑93 (MQ=255)
tACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATc > 1:2559049/1‑93 (MQ=255)
aCTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCt > 1:3017026/1‑93 (MQ=255)
cTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCtt < 2:1789116/93‑1 (MQ=255)
tttACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTg > 2:2273924/1‑93 (MQ=255)
ttACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGATGAGCATCTTGa > 2:3517800/1‑93 (MQ=255)
cccGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATAc > 2:1618195/1‑93 (MQ=255)
cccGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATAc > 1:594714/1‑93 (MQ=255)
cccGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCACAGTGGTCACACCGCAAATTTCGGCAGCTGGCATTGAGCATCTTGATAc < 2:4217111/93‑1 (MQ=255)
cGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTa < 1:1636141/93‑1 (MQ=255)
cGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTa > 2:743964/1‑93 (MQ=255)
ggAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAt > 2:4459496/1‑93 (MQ=255)
gAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtc < 1:945828/93‑1 (MQ=255)
aaTATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcc < 2:1907329/93‑1 (MQ=255)
aaTATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcc > 1:3677779/1‑93 (MQ=255)
aaTATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcc < 2:1304239/93‑1 (MQ=255)
atatGCCCAGACCTTTGCTCGCTGAGGTACTCCCTTCTCCGTGGTCACACCGCAAATTTCGGCAGGTTGCGTTGAGCCTCTTGATACTAtgct > 2:3549948/1‑93 (MQ=255)
atatGCCCAGACCTTTGCTCGCGGTGGTCCGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcct > 2:4480628/1‑93 (MQ=255)
atatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcct > 2:4480629/1‑93 (MQ=255)
atatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcct > 2:915421/1‑93 (MQ=255)
tatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcctc > 2:864259/1‑93 (MQ=255)
tatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcctc > 2:2231043/1‑93 (MQ=255)
|
TCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTC > NC_000913/1917500‑1917678
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC > NC_000913/1917497‑1917683
|
ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGC < SRR4302544.394903/94‑1 (MQ=60)
TCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCA < SRR4302544.152349/94‑1 (MQ=60)
TATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACC > SRR4302544.2189307/1‑94 (MQ=60)
TTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTT > SRR4302544.2426972/1‑94 (MQ=60)
TGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTT < SRR4302544.793799/94‑1 (MQ=60)
TGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTT < SRR4302544.3825096/94‑1 (MQ=60)
GATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTG > SRR4302544.341517/1‑94 (MQ=60)
ATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGC < SRR4302544.1044621/94‑1 (MQ=60)
GGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCG > SRR4302544.2962901/1‑94 (MQ=60)
GGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGG < SRR4302544.1845842/94‑1 (MQ=60)
GCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATNNGCCCAGACCTTTGCTCGCNGG > SRR4302544.760543/1‑94 (MQ=60)
CAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTG > SRR4302544.4263932/1‑94 (MQ=60)
TCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAC < SRR4302544.2793464/94‑1 (MQ=60)
AGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCG < SRR4302544.4610093/94‑1 (MQ=60)
CGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTT > SRR4302544.686232/1‑94 (MQ=60)
CGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTT > SRR4302544.686231/1‑94 (MQ=60)
CGCTGGATCTGATTACCGCACGCAATGAAGGACAGGCAAAGGCGGTACTTTACCAGGAATATGCGCAGACCTTTGCTCGCGGTGGTACGCGCTT > SRR4302544.686229/1‑94 (MQ=60)
GCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGCACGCGCTTC > SRR4302544.3804080/1‑94 (MQ=60)
CTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCT > SRR4302544.4622492/1‑94 (MQ=60)
GGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCA < SRR4302544.3834422/94‑1 (MQ=60)
GGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCA < SRR4302544.2582652/94‑1 (MQ=60)
ATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGT < SRR4302544.4045519/94‑1 (MQ=60)
TCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTG < SRR4302544.3141816/94‑1 (MQ=60)
CTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGG > SRR4302544.2453763/1‑94 (MQ=60)
CTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGG < SRR4302544.2208872/94‑1 (MQ=60)
ATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCA > SRR4302544.504931/1‑94 (MQ=60)
CACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCA > SRR4302544.1707135/1‑94 (MQ=60)
CGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAA > SRR4302544.260338/1‑94 (MQ=60)
CGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAA > SRR4302544.3846803/1‑94 (MQ=60)
GCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAT > SRR4302544.1767672/1‑94 (MQ=60)
GCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAT < SRR4302544.3643040/94‑1 (MQ=60)
AATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTT < SRR4302544.2035601/94‑1 (MQ=60)
GAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGG < SRR4302544.2700184/94‑1 (MQ=60)
GAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGG < SRR4302544.1950916/94‑1 (MQ=60)
ACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCT > SRR4302544.267980/1‑94 (MQ=60)
ccggaAAAGGCGGTACTTTACCCGGAATATGCCCAGAACTTTGCCCGCGGTGGTACGCGCTTCTCAGGGGTCACAacacaactttcgcaagatg > SRR4302544.2262456/6‑75 (MQ=60)
CAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTG > SRR4302544.4439200/1‑94 (MQ=60)
CAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTG > SRR4302544.1320489/1‑94 (MQ=60)
CAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTG < SRR4302544.1968915/94‑1 (MQ=60)
GGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAG < SRR4302544.3343924/94‑1 (MQ=60)
GCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGC < SRR4302544.1120209/94‑1 (MQ=60)
GGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCAT < SRR4302544.4094805/94‑1 (MQ=60)
GTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATC > SRR4302544.2583628/1‑94 (MQ=60)
GTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATC > SRR4302544.1892587/1‑94 (MQ=60)
GTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATC > SRR4302544.1161537/1‑94 (MQ=60)
TACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCT > SRR4302544.3045950/1‑94 (MQ=60)
ACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATAC > SRR4302544.600549/1‑94 (MQ=60)
CGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAT < SRR4302544.1652245/94‑1 (MQ=60)
GAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCC > SRR4302544.3714461/1‑94 (MQ=60)
GAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCC < SRR4302544.955140/94‑1 (MQ=60)
ATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCA > SRR4302544.835052/1‑94 (MQ=60)
TGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAG > SRR4302544.239288/1‑94 (MQ=60)
TGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAG < SRR4302544.1252259/94‑1 (MQ=60)
CCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC > SRR4302544.221720/1‑94 (MQ=60)
CCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC < SRR4302544.698804/94‑1 (MQ=60)
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ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC > NC_000913/1917497‑1917683
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
