Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,917,590	T→C	V688A (GTC→GCC)	b1834 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,917,590	0	T	C	100.0%	801.3 / NA	242	V688A (GTC→GCC)	b1834	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (112/130); total (112/130)

Only 100 of 251 total aligned reads displayed.

TCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCC  >  NC_000913/1917500‑1917679

tcGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGccc                                                                                         <  1:6614255/93‑1 (MQ=255)

     agtGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGAACTTTACCCGGAATATGCCCAGAcc                                                                                    >  2:6482814/3‑93 (MQ=255)

     aTTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGAcc                                                                                    <  1:5949314/93‑1 (MQ=255)

     aTTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGAcc                                                                                    >  2:5509424/1‑93 (MQ=255)

      ttGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCt                                                                                   <  2:233651/93‑1 (MQ=255)

      ttGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCt                                                                                   <  1:1851709/93‑1 (MQ=255)

        gATATCGGGCAACTCCAGACTCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCttt                                                                                 <  1:733417/93‑1 (MQ=255)

          tatCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGc                                                                               <  1:5245998/93‑1 (MQ=255)

          tatCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGc                                                                               <  2:4417736/93‑1 (MQ=255)

          tatCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGc                                                                               >  2:5966837/1‑93 (MQ=255)

          tatCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGc                                                                               <  1:4439002/93‑1 (MQ=255)

          tatCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGc                                                                               <  2:2997331/93‑1 (MQ=255)

          tatCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGc                                                                               >  1:6652272/1‑93 (MQ=255)

            tCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTCCCCGGAATATGCCCAGACCTTTGCTc                                                                             <  1:2558708/93‑1 (MQ=255)

            tCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTc                                                                             >  1:6120073/1‑93 (MQ=255)

             cGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTcg                                                                            <  2:4303769/93‑1 (MQ=255)

              gggCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTcgc                                                                           >  2:4008784/1‑93 (MQ=255)

              gggCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTAAAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTcgc                                                                           >  1:2956690/1‑93 (MQ=255)

                 cAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggt                                                                        <  1:1483091/93‑1 (MQ=255)

                  aaaTCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggtg                                                                       <  1:6350855/93‑1 (MQ=255)

                    aTCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggtggt                                                                     >  1:4655437/1‑93 (MQ=255)

                     tCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTa                                                                    <  2:358205/93‑1 (MQ=255)

                     tCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTa                                                                    >  2:6309770/1‑93 (MQ=255)

                      ccAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAc                                                                   <  2:2864942/93‑1 (MQ=255)

                       cAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAcg                                                                  >  2:1849865/1‑93 (MQ=255)

                       cAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAcg                                                                  >  1:4859050/1‑93 (MQ=255)

                        aGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAcgc                                                                 >  2:4549731/1‑93 (MQ=255)

                         gACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAcgcg                                                                >  1:853703/1‑93 (MQ=255)

                         gACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAcgcg                                                                <  2:6209991/93‑1 (MQ=255)

                          aCGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACgcgc                                                               >  1:4627069/1‑93 (MQ=255)

                           cGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCt                                                              >  1:5063724/1‑93 (MQ=255)

                             gtGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTtc                                                            <  1:4256785/92‑1 (MQ=255)

                             cTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTtc                                                            <  1:3798579/93‑1 (MQ=255)

                              tGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTtct                                                           >  1:190418/1‑93 (MQ=255)

                              tGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTtct                                                           >  1:3038879/1‑93 (MQ=255)

                               ggATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTtctc                                                          >  2:6104875/1‑93 (MQ=255)

                                   cTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTg                                                      <  1:1382847/93‑1 (MQ=255)

                                   cTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTg                                                      >  2:125105/1‑93 (MQ=255)

                                     gATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGt                                                    <  1:1061545/93‑1 (MQ=255)

                                     gATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGt                                                    <  1:5573723/93‑1 (MQ=255)

                                     gATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGt                                                    >  2:2443989/1‑93 (MQ=255)

                                      aTTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTc                                                   >  1:2825270/1‑93 (MQ=255)

                                      aTTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTc                                                   >  2:4481915/1‑93 (MQ=255)

                                           cgcacgcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACAcc                                              <  2:5110856/93‑1 (MQ=255)

                                           cgcacgcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACAcc                                              <  1:3844150/93‑1 (MQ=255)

                                            gcacgcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCg                                             >  1:2586330/1‑93 (MQ=255)

                                               cgcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCaa                                          <  1:6056873/93‑1 (MQ=255)

                                                 caATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAt                                        <  2:141186/93‑1 (MQ=255)

                                                   aTGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAttt                                      >  1:1200735/1‑93 (MQ=255)

                                                   aTGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAttt                                      <  1:3234858/93‑1 (MQ=255)

                                                    tGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTc                                     >  1:2338145/1‑93 (MQ=255)

                                                     gAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCg                                    <  1:2502340/93‑1 (MQ=255)

                                                       aGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGc                                  <  2:2403859/93‑1 (MQ=255)

                                                        gTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCa                                 >  2:3073980/1‑93 (MQ=255)

                                                        gTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCa                                 <  1:5365786/93‑1 (MQ=255)

                                                           cAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCt                              <  1:4407545/93‑1 (MQ=255)

                                                           cAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCt                              >  2:4848975/1‑93 (MQ=255)

                                                             ggCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTgg                            <  2:892164/93‑1 (MQ=255)

                                                             ggCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTgg                            >  2:2291257/1‑93 (MQ=255)

                                                             ggCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTgg                            >  2:2027742/1‑93 (MQ=255)

                                                             ggCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTgg                            >  2:6611419/1‑93 (MQ=255)

                                                              gCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGc                           >  2:4660846/1‑93 (MQ=255)

                                                               cAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCg                          <  1:2682228/93‑1 (MQ=255)

                                                                aaaGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGt                         <  1:5747900/93‑1 (MQ=255)

                                                                aaaGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGt                         <  2:3684302/93‑1 (MQ=255)

                                                                 agggCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGtt                        >  1:3467039/3‑93 (MQ=255)

                                                                 aaGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGtt                        <  2:6252269/93‑1 (MQ=255)

                                                                  aGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTg                       <  1:6629550/93‑1 (MQ=255)

                                                                   ggCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGa                      <  2:5851899/93‑1 (MQ=255)

                                                                     cGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGc                    >  1:4940340/1‑93 (MQ=255)

                                                                      ggTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCa                   >  1:5822181/1‑93 (MQ=255)

                                                                      ggTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCa                   <  1:3374081/93‑1 (MQ=255)

                                                                      ggTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCa                   <  1:2907722/93‑1 (MQ=255)

                                                                      ggTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCa                   >  2:1548633/1‑93 (MQ=255)

                                                                       gTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCATTGAGCAt                  <  1:6536476/93‑1 (MQ=255)

                                                                          cTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCtt               <  2:71002/93‑1 (MQ=255)

                                                                          cTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCtt               >  1:907916/1‑93 (MQ=255)

                                                                          cTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCtt               <  2:1466787/93‑1 (MQ=255)

                                                                          cTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCtt               >  2:5135796/1‑93 (MQ=255)

                                                                           tttACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTg              >  2:3247230/1‑93 (MQ=255)

                                                                           tttACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTg              >  1:4810951/1‑93 (MQ=255)

                                                                           tttACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTg              >  1:4312774/1‑93 (MQ=255)

                                                                            ttACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGa             <  2:407870/93‑1 (MQ=255)

                                                                            ttACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGCGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGa             <  2:6351602/93‑1 (MQ=255)

                                                                              aCCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATa           <  2:3430001/93‑1 (MQ=255)

                                                                               ctcGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATAc          <  2:5928801/91‑1 (MQ=255)

                                                                               cccGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATAc          >  2:2186221/1‑93 (MQ=255)

                                                                               cccGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATAc          <  1:1261865/93‑1 (MQ=255)

                                                                               cccGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATAc          >  1:2177896/1‑93 (MQ=255)

                                                                                  ggAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAt       <  2:4738777/93‑1 (MQ=255)

                                                                                  ggAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAt       >  1:6731043/1‑93 (MQ=255)

                                                                                  ggAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAt       >  2:538586/1‑93 (MQ=255)

                                                                                   gAATATGCCCAGACCTTTGCTCGCGGTGGTACGTGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCGTCTTGATACTAtc      >  2:4241748/1‑93 (MQ=255)

                                                                                     atatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcct    >  1:3126589/1‑93 (MQ=255)

                                                                                      tatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATCCTGtcctc   <  1:1296829/93‑1 (MQ=255)

                                                                                      tatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcctc   <  2:750040/93‑1 (MQ=255)

                                                                                      tatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcctc   <  1:5396908/93‑1 (MQ=255)

                                                                                       atGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcctcc  <  2:1133135/93‑1 (MQ=255)

                                                                                       atGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcctcc  <  2:260471/93‑1 (MQ=255)

                                                                                       atGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcctcc  >  1:4948782/1‑93 (MQ=255)

TCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCC  >  NC_000913/1917500‑1917679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC  >  NC_000913/1917497‑1917683

ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGC                                                                                               <  SRR4302536.3985219/94‑1 (MQ=60)

ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGC                                                                                               <  SRR4302536.3706288/94‑1 (MQ=60)

ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGC                                                                                               >  SRR4302536.5602342/1‑94 (MQ=60)

  CTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCC                                                                                             >  SRR4302536.3598816/1‑94 (MQ=60)

   TCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCA                                                                                            <  SRR4302536.6810916/94‑1 (MQ=60)

   TCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCA                                                                                            <  SRR4302536.6312540/94‑1 (MQ=60)

    CGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAG                                                                                           <  SRR4302536.208306/94‑1 (MQ=60)

       TATTGATATCGGGCAAATCCAGACTCTGGATCTGCTTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACC                                                                                        <  SRR4302536.5441223/94‑1 (MQ=60)

       TATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACC                                                                                        >  SRR4302536.5054973/1‑94 (MQ=60)

       TATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACC                                                                                        >  SRR4302536.1832307/1‑94 (MQ=60)

        ATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCT                                                                                       <  SRR4302536.6126550/94‑1 (MQ=60)

        ATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGCACTTTACCCGGAATATGCCCAGACCT                                                                                       >  SRR4302536.3350340/1‑94 (MQ=60)

         TTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTT                                                                                      <  SRR4302536.1907516/94‑1 (MQ=60)

         ATGATATCGGGCAAATCCAGACGCAGGATCTGATTACCGCAAGCAATGAAGTACAGGCAAAGTCGGTACTTTACCCGGAATATGCCCAGACCTT                                                                                      <  SRR4302536.4465098/94‑1 (MQ=60)

          TGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTT                                                                                     >  SRR4302536.5979956/1‑94 (MQ=60)

           GATATCGGGCAACTCCAGACTCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTG                                                                                    <  SRR4302536.754927/94‑1 (MQ=60)

           GATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTG                                                                                    <  SRR4302536.2621315/94‑1 (MQ=60)

           GATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTG                                                                                    <  SRR4302536.3953007/94‑1 (MQ=60)

            ATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGC                                                                                   >  SRR4302536.3558781/1‑94 (MQ=60)

            ATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGC                                                                                   >  SRR4302536.5732717/1‑94 (MQ=60)

            ATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGC                                                                                   >  SRR4302536.3390904/1‑94 (MQ=60)

            ATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGC                                                                                   >  SRR4302536.6850022/1‑94 (MQ=60)

            ATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACACGGAATATGCCCAGAACTTTGC                                                                                   >  SRR4302536.5739948/1‑94 (MQ=60)

             TATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCT                                                                                  <  SRR4302536.5402328/94‑1 (MQ=60)

             TATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCT                                                                                  <  SRR4302536.6891095/94‑1 (MQ=60)

             TATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCT                                                                                  <  SRR4302536.4572241/94‑1 (MQ=60)

             TATCGGGCAAATCCAGACGCTGGATCTGAATACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCT                                                                                  <  SRR4302536.2350732/94‑1 (MQ=60)

              ATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTC                                                                                 >  SRR4302536.6302482/1‑94 (MQ=60)

               TCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTCCCCGGAATATGCCCAGACCTTTGCTCG                                                                                <  SRR4302536.2635715/94‑1 (MQ=60)

                CGGGCAAATCCAGACGCTGGCTCTGATTACCGCACGCAATGAAGTACAGGCTGAGGCGCCACTTTACCCGGAATATGCCCAGACCTTTGGTCGC                                                                               <  SRR4302536.6867204/94‑1 (MQ=60)

                CGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGC                                                                               >  SRR4302536.1824438/1‑94 (MQ=60)

                CGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTAAAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGC                                                                               >  SRR4302536.3043800/1‑94 (MQ=60)

                 GGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCG                                                                              <  SRR4302536.4467420/94‑1 (MQ=60)

                  GGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGG                                                                             <  SRR4302536.889852/94‑1 (MQ=60)

                    CAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTG                                                                           <  SRR4302536.1526901/94‑1 (MQ=60)

                    CAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGCG                                                                           >  SRR4302536.4047636/1‑94 (MQ=60)

                     AAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGG                                                                          <  SRR4302536.6540029/94‑1 (MQ=60)

                      AATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGT                                                                         >  SRR4302536.4795412/1‑94 (MQ=60)

                      AATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGT                                                                         <  SRR4302536.5477130/94‑1 (MQ=60)

                        TCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAG                                                                       >  SRR4302536.122865/1‑94 (MQ=60)

                         CCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACG                                                                      <  SRR4302536.2646516/94‑1 (MQ=60)

                         CCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACG                                                                      >  SRR4302536.5005281/1‑94 (MQ=60)

                           AGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCG                                                                    >  SRR4302536.878811/1‑94 (MQ=60)

                            GACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGC                                                                   >  SRR4302536.4766101/1‑94 (MQ=60)

                             ACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCT                                                                  >  SRR4302536.5215386/1‑94 (MQ=60)

                             ACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCT                                                                  >  SRR4302536.4623745/1‑94 (MQ=60)

                              CGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTT                                                                 >  SRR4302536.4925962/1‑94 (MQ=60)

                              CGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTT                                                                 <  SRR4302536.3324866/94‑1 (MQ=60)

                              CGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTT                                                                 >  SRR4302536.497738/1‑94 (MQ=60)

                               GCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTC                                                                >  SRR4302536.2994040/1‑94 (MQ=60)

                               GCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTC                                                                <  SRR4302536.138441/94‑1 (MQ=60)

                                GTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCT                                                               <  SRR4302536.4383601/94‑1 (MQ=60)

                                CTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCT                                                               >  SRR4302536.3128233/1‑94 (MQ=60)

                                CTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCT                                                               >  SRR4302536.195446/1‑94 (MQ=60)

                                CTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCT                                                               <  SRR4302536.3911865/94‑1 (MQ=60)

                                 TGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTC                                                              <  SRR4302536.4243477/94‑1 (MQ=60)

                                  GGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCA                                                             >  SRR4302536.3801512/1‑94 (MQ=60)

                                      CTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGG                                                         <  SRR4302536.1424036/94‑1 (MQ=60)

                                      CTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGG                                                         >  SRR4302536.2124200/1‑94 (MQ=60)

                                      CTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGG                                                         >  SRR4302536.6221831/1‑94 (MQ=60)

                                      CTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGGACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGG                                                         >  SRR4302536.604950/1‑94 (MQ=60)

                                        GATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTC                                                       >  SRR4302536.2908909/1‑94 (MQ=60)

                                        GATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTC                                                       <  SRR4302536.1093297/94‑1 (MQ=60)

                                        GATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTC                                                       <  SRR4302536.5739647/94‑1 (MQ=60)

                                         ATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCA                                                      <  SRR4302536.6260068/94‑1 (MQ=60)

                                         ATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCA                                                      <  SRR4302536.489634/94‑1 (MQ=60)

                                           TACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACA                                                    >  SRR4302536.4417747/1‑94 (MQ=60)

                                             CCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGTCCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACGCC                                                  <  SRR4302536.2334085/94‑1 (MQ=60)

                                             CCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACC                                                  <  SRR4302536.4770015/94‑1 (MQ=60)

                                              CGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCG                                                 >  SRR4302536.3070413/1‑94 (MQ=60)

                                              CGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCG                                                 <  SRR4302536.2873519/94‑1 (MQ=60)

                                              CGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCG                                                 >  SRR4302536.4590543/1‑94 (MQ=60)

                                              CGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCG                                                 >  SRR4302536.2664032/1‑94 (MQ=60)

                                              CGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCC                                                 <  SRR4302536.3958606/94‑1 (MQ=60)

                                                CACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCATACCGCA                                               >  SRR4302536.1935631/1‑94 (MQ=60)

                                                CACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCA                                               <  SRR4302536.6821797/94‑1 (MQ=60)

                                                CACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCA                                               >  SRR4302536.1354158/1‑94 (MQ=60)

                                                CACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCA                                               <  SRR4302536.1498701/94‑1 (MQ=60)

                                                  CGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAA                                             <  SRR4302536.6237563/94‑1 (MQ=60)

                                                    CAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATT                                           >  SRR4302536.747399/1‑94 (MQ=60)

                                                    CAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATT                                           >  SRR4302536.2995986/1‑94 (MQ=60)

                                                    CAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATT                                           <  SRR4302536.6023576/94‑1 (MQ=60)

                                                    CAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATT                                           >  SRR4302536.696859/1‑94 (MQ=60)

                                                     AATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTT                                          >  SRR4302536.6468217/1‑94 (MQ=60)

                                                     AATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTT                                          >  SRR4302536.1236820/1‑94 (MQ=60)

                                                     AATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTT                                          >  SRR4302536.6842438/1‑94 (MQ=60)

                                                      ATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTC                                         >  SRR4302536.2409082/1‑94 (MQ=60)

                                                      ATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTC                                         <  SRR4302536.3329684/94‑1 (MQ=60)

                                                      ATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTC                                         <  SRR4302536.4545364/94‑1 (MQ=60)

                                                      ATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTC                                         >  SRR4302536.4497473/1‑94 (MQ=60)

                                                       TGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCG                                        <  SRR4302536.2570774/94‑1 (MQ=60)

                                                       TGAAGTACAGCCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCG                                        <  SRR4302536.2672608/94‑1 (MQ=60)

                                                        GAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGG                                       <  SRR4302536.2577786/94‑1 (MQ=60)

                                                         AAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGC                                      >  SRR4302536.1260231/1‑94 (MQ=60)

                                                           GTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAG                                    <  SRR4302536.5525831/94‑1 (MQ=60)

                                                            TACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGC                                   >  SRR4302536.3213918/1‑94 (MQ=60)

                                                             ACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACGCCGCAAATTTCGGCAGCT                                  >  SRR4302536.2637644/1‑94 (MQ=60)

                                                              CAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTG                                 <  SRR4302536.4539381/94‑1 (MQ=60)

                                                              CAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTG                                 >  SRR4302536.570615/1‑94 (MQ=60)

                                                                  CAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGT                             <  SRR4302536.2762369/94‑1 (MQ=60)

                                                                  CAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGT                             >  SRR4302536.3132365/1‑94 (MQ=60)

                                                                   AAGGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTT                            >  SRR4302536.3570366/1‑94 (MQ=60)

                                                                   AAAGGCGGTACTTTACCCGGAATATTCCAAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTT                            <  SRR4302536.5036176/94‑1 (MQ=60)

                                                                   AAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTT                            <  SRR4302536.6836034/94‑1 (MQ=60)

                                                                   AAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTT                            <  SRR4302536.279557/94‑1 (MQ=60)

                                                                   AAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTT                            <  SRR4302536.5366311/94‑1 (MQ=60)

                                                                   AAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTT                            <  SRR4302536.5918888/94‑1 (MQ=60)

                                                                     AGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGA                          <  SRR4302536.6826740/94‑1 (MQ=60)

                                                                      GGCGGGACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAG                         <  SRR4302536.798474/94‑1 (MQ=60)

                                                                       GCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGC                        >  SRR4302536.5088809/1‑94 (MQ=60)

                                                                        CGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCA                       >  SRR4302536.5995634/1‑94 (MQ=60)

                                                                         GGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCAT                      <  SRR4302536.3474318/94‑1 (MQ=60)

                                                                         GGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCAT                      <  SRR4302536.2993548/94‑1 (MQ=60)

                                                                          GTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCATTGAGCATC                     <  SRR4302536.6731168/94‑1 (MQ=60)

                                                                          GTACTTTACACGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATC                     >  SRR4302536.6758163/1‑94 (MQ=60)

                                                                            ACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTT                   >  SRR4302536.934661/1‑94 (MQ=60)

                                                                             CTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTG                  >  SRR4302536.4441853/1‑94 (MQ=60)

                                                                             CTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTG                  >  SRR4302536.4955730/1‑94 (MQ=60)

                                                                             CTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGAGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTG                  >  SRR4302536.6207598/1‑94 (MQ=60)

                                                                              TTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGA                 <  SRR4302536.1300645/94‑1 (MQ=60)

                                                                              TTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGA                 >  SRR4302536.5090631/1‑94 (MQ=60)

                                                                               TTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGAT                <  SRR4302536.2950148/94‑1 (MQ=60)

                                                                               TTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGAT                <  SRR4302536.6673620/94‑1 (MQ=60)

                                                                                TACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATA               <  SRR4302536.2496731/94‑1 (MQ=60)

                                                                                 ACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATAC              >  SRR4302536.2243531/1‑94 (MQ=60)

                                                                                  CCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACT             <  SRR4302536.1299702/94‑1 (MQ=60)

                                                                                    CGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAT           >  SRR4302536.6931137/1‑94 (MQ=60)

                                                                                     GGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATC          >  SRR4302536.779801/1‑94 (MQ=60)

                                                                                      GAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCC         <  SRR4302536.5953296/94‑1 (MQ=60)

                                                                                       AATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGCTACTATCCT        <  SRR4302536.6758924/94‑1 (MQ=60)

                                                                                       AATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCT        <  SRR4302536.1271744/94‑1 (MQ=60)

                                                                                       AATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCT        >  SRR4302536.3217965/1‑94 (MQ=60)

                                                                                        ATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTC       >  SRR4302536.552733/1‑94 (MQ=60)

                                                                                         TATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATCCTGTCCTCC      <  SRR4302536.1335588/94‑1 (MQ=60)

                                                                                         TATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCC      >  SRR4302536.5097462/1‑94 (MQ=60)

                                                                                         TATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCC      <  SRR4302536.5558072/94‑1 (MQ=60)

                                                                                          ATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCA     <  SRR4302536.5169921/94‑1 (MQ=60)

                                                                                          ATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCA     <  SRR4302536.516907/94‑1 (MQ=60)

                                                                                          ATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCA     >  SRR4302536.804330/1‑94 (MQ=60)

                                                                                           TGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAG    <  SRR4302536.2522860/94‑1 (MQ=60)

                                                                                           TGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAG    >  SRR4302536.3942365/1‑94 (MQ=60)

                                                                                           TGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAG    <  SRR4302536.2949394/94‑1 (MQ=60)

                                                                                            GCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGC   <  SRR4302536.2912987/94‑1 (MQ=60)

                                                                                             CCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC  <  SRR4302536.6662720/94‑1 (MQ=60)

                                                                                             CCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC  >  SRR4302536.1603996/1‑94 (MQ=60)

                                                                                             CCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC  >  SRR4302536.2004688/1‑94 (MQ=60)

                                                                                             CCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC  >  SRR4302536.4383365/1‑94 (MQ=60)

ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC  >  NC_000913/1917497‑1917683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`