Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1357 179.3 9500450 96.1% 9129932 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,919,873 G→A D24N (GAT→AAT)  b1836 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,919,8730GA98.3% 616.6 / ‑2.2 179D24N (GAT→AAT) b1836hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (2/1);  new base A (86/90);  total (88/91)
Fisher's exact test for biased strand distribution p-value = 6.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.15e-01

Only 100 of 180 total aligned reads displayed.

AGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTG  >  NC_000913/1919783‑1919962
                                                                                          |                                                                                         
aGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAt                                                                                         >  2:2132006/1‑93 (MQ=255)
aGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAt                                                                                         <  1:4295685/93‑1 (MQ=255)
aGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAt                                                                                         <  2:3063498/93‑1 (MQ=255)
 gCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATc                                                                                        <  1:3319973/93‑1 (MQ=255)
 gCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATc                                                                                        >  1:2091258/1‑93 (MQ=255)
  cTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCg                                                                                       <  1:4391128/93‑1 (MQ=255)
   tAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGa                                                                                      >  2:3820058/1‑93 (MQ=255)
   tAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGCGAATCGCCAGGTAATCGa                                                                                      >  2:2934373/1‑93 (MQ=255)
    aaaTGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGaa                                                                                     <  1:3087097/93‑1 (MQ=255)
    aaaTGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCCaa                                                                                     >  2:1888497/1‑93 (MQ=255)
     aaTGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAAc                                                                                    >  2:4483082/1‑93 (MQ=255)
      aTGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACg                                                                                   <  1:837207/93‑1 (MQ=255)
      aTGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACg                                                                                   >  1:2933003/1‑93 (MQ=255)
       tGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAActt                                                                                  <  2:2056643/93‑3 (MQ=255)
       tGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGt                                                                                  <  1:2266649/93‑1 (MQ=255)
        ggAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGtt                                                                                 <  2:1216984/93‑1 (MQ=255)
        ggAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGtt                                                                                 <  1:3269659/93‑1 (MQ=255)
          ggaacACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTaa                                                                               <  1:1044296/89‑1 (MQ=255)
           gagCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAc                                                                              >  1:2604249/1‑93 (MQ=255)
             gCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCa                                                                            >  1:3980575/1‑93 (MQ=255)
             gCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCa                                                                            >  2:2243256/1‑93 (MQ=255)
              gaCGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCAt                                                                           <  1:4250354/92‑1 (MQ=255)
               aCGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCAtt                                                                          >  2:4604544/1‑93 (MQ=255)
                cGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTc                                                                         <  2:2517584/93‑1 (MQ=255)
                 gAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTcc                                                                        <  1:371418/93‑1 (MQ=255)
                 gAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTcc                                                                        <  1:864321/93‑1 (MQ=255)
                  aaGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCt                                                                       >  2:1178708/1‑93 (MQ=255)
                   aGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCtt                                                                      >  1:2873990/1‑93 (MQ=255)
                   aGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCtt                                                                      <  2:3589185/93‑1 (MQ=255)
                    gATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTg                                                                     >  2:4078273/1‑93 (MQ=255)
                    gATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTg                                                                     >  2:4078272/1‑93 (MQ=255)
                     aTGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCtttt                                                                    >  2:864546/1‑91 (MQ=255)
                     aTGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGt                                                                    >  2:4663502/1‑93 (MQ=255)
                      tGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTa                                                                   >  1:4631875/1‑93 (MQ=255)
                       gAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaa                                                                  <  1:1029160/93‑1 (MQ=255)
                        aaaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaaa                                                                 <  1:2068657/93‑1 (MQ=255)
                        aaaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaaa                                                                 >  2:3150696/1‑93 (MQ=255)
                        aaaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaaa                                                                 <  2:3605456/93‑1 (MQ=255)
                         aaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTTTAAAt                                                                >  2:3494001/1‑93 (MQ=255)
                         aaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAAt                                                                >  2:4202688/1‑93 (MQ=255)
                         aaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAAt                                                                >  1:4670206/1‑93 (MQ=255)
                          aaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATc                                                               <  1:4049994/93‑1 (MQ=255)
                            ccAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTg                                                             >  1:2236266/1‑93 (MQ=255)
                            ccAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTg                                                             >  2:1721627/1‑93 (MQ=255)
                              aGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAc                                                           >  2:4428457/1‑93 (MQ=255)
                               gtgtGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAcc                                                          <  1:999587/93‑1 (MQ=255)
                                 gtgCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAcccc                                                        <  2:897708/93‑1 (MQ=255)
                                 gtgCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAcccc                                                        >  2:1624610/1‑93 (MQ=255)
                                      cATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGAttt                                                   <  2:3917891/93‑1 (MQ=255)
                                       aTAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTta                                                  >  1:4537304/1‑93 (MQ=255)
                                       aTAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTta                                                  >  1:1912019/1‑93 (MQ=255)
                                        tAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtat                                                 <  2:2824237/93‑1 (MQ=255)
                                        tAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtat                                                 >  2:3394411/1‑93 (MQ=255)
                                         aGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatg                                                <  1:4604544/93‑1 (MQ=255)
                                          ggCGCTTTTGAAATCGGCGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgt                                               <  1:4586164/93‑1 (MQ=255)
                                            cgcTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgtat                                             <  2:2091258/93‑1 (MQ=255)
                                              cTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGc                                           >  1:4557240/1‑93 (MQ=255)
                                              cTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGc                                           >  2:4311358/1‑93 (MQ=255)
                                              cTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGc                                           >  2:1949441/1‑93 (MQ=255)
                                              cTTTTGAAATCGACGACGGCGAATTACACGGTCAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGc                                           <  2:542995/93‑1 (MQ=255)
                                               ttttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCa                                          <  1:3152049/93‑1 (MQ=255)
                                                tttGAAATCGACGACGGCGAATTACACGGTGAATCGCCCGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCac                                         >  1:2005289/1‑92 (MQ=255)
                                                tttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCaa                                         <  1:650762/93‑1 (MQ=255)
                                                tttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCaa                                         >  2:1702619/1‑93 (MQ=255)
                                                   gAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTg                                      <  2:2283662/93‑1 (MQ=255)
                                                    aaaTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTgg                                     <  1:3631447/93‑1 (MQ=255)
                                                     aaTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGa                                    >  2:2843623/1‑93 (MQ=255)
                                                      aTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAt                                   <  1:4410345/93‑1 (MQ=255)
                                                       tCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATg                                  <  1:1203175/93‑1 (MQ=255)
                                                       tCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATg                                  >  2:3216142/1‑93 (MQ=255)
                                                       tCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCACGATTTATGTATGCAACTGGATg                                  >  2:3216143/1‑93 (MQ=255)
                                                        cgacgaCGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGc                                 >  2:3402114/1‑93 (MQ=255)
                                                        cgacgaCGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTGATGTATGCAACTGGATGc                                 <  2:4558734/93‑1 (MQ=255)
                                                         gacgacGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGcc                                <  1:146178/93‑1 (MQ=255)
                                                         gacgacGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGcc                                <  2:1419786/93‑1 (MQ=255)
                                                          acgacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGTCCCCGATTTATGTATGCAACTGGATGCCt                               >  2:2708372/1‑93 (MQ=255)
                                                           cgacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTg                              <  2:3947744/93‑1 (MQ=255)
                                                           cgacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTg                              <  1:1107622/93‑1 (MQ=255)
                                                           cgacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTg                              <  2:2157642/93‑1 (MQ=255)
                                                            gacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTgg                             >  2:1033811/1‑93 (MQ=255)
                                                            gacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTgg                             <  1:2176980/93‑1 (MQ=255)
                                                              cgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGa                           <  1:4497525/93‑1 (MQ=255)
                                                               ggCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAt                          >  1:4553914/1‑93 (MQ=255)
                                                               ggCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAt                          <  1:1228756/93‑1 (MQ=255)
                                                               ggCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAt                          <  2:2063230/93‑1 (MQ=255)
                                                                 cGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGc                        >  1:3000930/1‑93 (MQ=255)
                                                                    aTTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGa                     >  2:688461/1‑93 (MQ=255)
                                                                     ttACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGaa                    >  1:4686873/1‑93 (MQ=255)
                                                                      tACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGaaa                   >  1:67311/1‑93 (MQ=255)
                                                                         acGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCa                >  1:3579055/1‑93 (MQ=255)
                                                                         acGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCa                >  2:713256/1‑93 (MQ=255)
                                                                         acGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGCATGCTGAAACCa                <  1:903886/93‑1 (MQ=255)
                                                                           ggTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGt              <  1:2809299/93‑1 (MQ=255)
                                                                            gTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTa             <  1:2055363/93‑1 (MQ=255)
                                                                              gAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATc           >  1:1872603/1‑93 (MQ=255)
                                                                                aTCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccc         <  2:288790/93‑1 (MQ=255)
                                                                                aTCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccc         >  1:1434919/1‑93 (MQ=255)
                                                                                    ccAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgcc     <  2:804450/93‑1 (MQ=255)
                                                                                    ccAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgcc     >  1:2378857/1‑93 (MQ=255)
                                                                                       ggTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgccctg  >  1:2645569/1‑93 (MQ=255)
                                                                                          |                                                                                         
AGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTG  >  NC_000913/1919783‑1919962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  >  NC_000913/1919782‑1919966
                                                                                           |                                                                                             
GAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAT                                                                                             <  SRR4302544.3166808/94‑1 (MQ=60)
CAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAT                                                                                             <  SRR4302544.4183998/94‑1 (MQ=60)
 AGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATC                                                                                            <  SRR4302544.4339532/94‑1 (MQ=60)
 AGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATC                                                                                            >  SRR4302544.2111381/1‑94 (MQ=60)
  GCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCG                                                                                           <  SRR4302544.3351604/94‑1 (MQ=60)
   CTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGA                                                                                          <  SRR4302544.4435557/94‑1 (MQ=60)
     AAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAAC                                                                                        <  SRR4302544.3116511/94‑1 (MQ=60)
      AATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACG                                                                                       >  SRR4302544.2961186/1‑94 (MQ=60)
       ATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGT                                                                                      <  SRR4302544.845460/94‑1 (MQ=60)
       ATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGT                                                                                      <  SRR4302544.891705/94‑1 (MQ=60)
        TGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTT                                                                                     <  SRR4302544.2287976/94‑1 (MQ=60)
        TGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTT                                                                                     <  SRR4302544.2287975/94‑1 (MQ=60)
         GGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTA                                                                                    <  SRR4302544.3300849/94‑1 (MQ=60)
           ggaaCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAC                                                                                  <  SRR4302544.1054655/90‑1 (MQ=60)
           AGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAC                                                                                  >  SRR4302544.2629269/1‑94 (MQ=60)
            GAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACC                                                                                 <  SRR4302544.4706435/94‑1 (MQ=60)
             AGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCA                                                                                >  SRR4302544.4020190/1‑94 (MQ=60)
              GCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCAT                                                                               <  SRR4302544.4528028/94‑1 (MQ=60)
               GACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATT                                                                              <  SRR4302544.4293685/94‑1 (MQ=60)
               CACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATT                                                                              <  SRR4302544.2836706/94‑1 (MQ=60)
                ACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATAGAAGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACAATTC                                                                             >  SRR4302544.4720535/1‑94 (MQ=60)
                  GAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCT                                                                           <  SRR4302544.872872/94‑1 (MQ=60)
                  GAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCT                                                                           <  SRR4302544.375211/94‑1 (MQ=60)
                   AAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTT                                                                          >  SRR4302544.4552302/1‑94 (MQ=60)
                   AAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTT                                                                          >  SRR4302544.2901730/1‑94 (MQ=60)
                     GATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGT                                                                        <  SRR4302544.2101200/94‑1 (MQ=60)
                     GATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGT                                                                        <  SRR4302544.2739383/94‑1 (MQ=60)
                      ATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTA                                                                       >  SRR4302544.4677785/1‑94 (MQ=60)
                        GAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAA                                                                     <  SRR4302544.1039418/94‑1 (MQ=60)
                         AAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTACAT                                                                    >  SRR4302544.3130033/1‑94 (MQ=60)
                         AAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAAT                                                                    >  SRR4302544.4716369/1‑94 (MQ=60)
                         AAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAAT                                                                    <  SRR4302544.2088518/94‑1 (MQ=60)
                           AACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCT                                                                  <  SRR4302544.4090332/94‑1 (MQ=60)
                            ACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTG                                                                 >  SRR4302544.2257298/1‑94 (MQ=60)
                            ACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTG                                                                 >  SRR4302544.2656727/1‑94 (MQ=60)
                              CAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAC                                                               >  SRR4302544.1920920/1‑94 (MQ=60)
                               AGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACC                                                              >  SRR4302544.862596/1‑94 (MQ=60)
                               AGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACC                                                              >  SRR4302544.3052384/1‑94 (MQ=60)
                                GTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCC                                                             <  SRR4302544.1009482/94‑1 (MQ=60)
                                 TGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCC                                                            <  SRR4302544.2189110/94‑1 (MQ=60)
                                    GCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGAT                                                         <  SRR4302544.4302059/94‑1 (MQ=60)
                                     CGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATT                                                        >  SRR4302544.2012640/1‑94 (MQ=60)
                                       CATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTA                                                      >  SRR4302544.4582668/1‑94 (MQ=60)
                                       CATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTA                                                      >  SRR4302544.1930496/1‑94 (MQ=60)
                                         TAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATG                                                    <  SRR4302544.4425549/94‑1 (MQ=60)
                                          AGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGT                                                   <  SRR4302544.4650302/94‑1 (MQ=60)
                                          AGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGT                                                   >  SRR4302544.4665655/1‑94 (MQ=60)
                                           GGCGCTTTTGAAATCGGCGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTA                                                  <  SRR4302544.4631822/94‑1 (MQ=60)
                                            GCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGCAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTAT                                                 >  SRR4302544.4624198/1‑94 (MQ=60)
                                             GGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATG                                                <  SRR4302544.3019006/94‑1 (MQ=60)
                                              GCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGC                                               >  SRR4302544.4602710/1‑94 (MQ=60)
                                                TTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCCGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAC                                             >  SRR4302544.2024771/1‑94 (MQ=60)
                                                TTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAA                                             <  SRR4302544.3182026/94‑1 (MQ=60)
                                                 TTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAAC                                            <  SRR4302544.657203/94‑1 (MQ=60)
                                                  TTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACT                                           <  SRR4302544.4600732/94‑1 (MQ=60)
                                                  TTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACT                                           <  SRR4302544.2248786/94‑1 (MQ=60)
                                                  TTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAAAT                                           <  SRR4302544.4584793/94‑1 (MQ=60)
                                                    GAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGG                                         <  SRR4302544.1008333/94‑1 (MQ=60)
                                                     AAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGA                                        >  SRR4302544.4149448/1‑94 (MQ=60)
                                                     AAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGA                                        <  SRR4302544.3667631/94‑1 (MQ=60)
                                                       ATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATG                                      <  SRR4302544.4454876/94‑1 (MQ=60)
                                                        TCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGC                                     <  SRR4302544.1215096/94‑1 (MQ=60)
                                                          GACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCT                                   >  SRR4302544.3988873/1‑94 (MQ=60)
                                                          GACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCT                                   <  SRR4302544.147577/94‑1 (MQ=60)
                                                            CGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGG                                 <  SRR4302544.1118666/94‑1 (MQ=60)
                                                             GACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGG                                <  SRR4302544.2197602/94‑1 (MQ=60)
                                                             GACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGG                                >  SRR4302544.530406/1‑94 (MQ=60)
                                                               CGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAT                              <  SRR4302544.4542662/94‑1 (MQ=60)
                                                               CGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAT                              >  SRR4302544.4599365/1‑94 (MQ=60)
                                                                GGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATG                             <  SRR4302544.1240913/94‑1 (MQ=60)
                                                                 GCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGC                            >  SRR4302544.3029697/1‑94 (MQ=60)
                                                                  CGAATTACACTGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCT                           <  SRR4302544.1137834/94‑1 (MQ=60)
                                                                  CGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCT                           <  SRR4302544.1766504/94‑1 (MQ=60)
                                                                   GAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTG                          >  SRR4302544.3528098/1‑94 (MQ=60)
                                                                     ATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAA                        >  SRR4302544.4733197/1‑94 (MQ=60)
                                                                     ATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAA                        >  SRR4302544.3733940/1‑94 (MQ=60)
                                                                      TTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAA                       >  SRR4302544.67983/1‑94 (MQ=60)
                                                                        ACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACC                     <  SRR4302544.12503/94‑1 (MQ=60)
                                                                         CACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCA                    >  SRR4302544.3613385/1‑94 (MQ=60)
                                                                          ACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAG                   <  SRR4302544.2065077/94‑1 (MQ=60)
                                                                          ACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGCATGCTGAAACCAG                   <  SRR4302544.912835/94‑1 (MQ=60)
                                                                            GGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTA                 <  SRR4302544.2836403/94‑1 (MQ=60)
                                                                             GTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTAT                <  SRR4302544.2075140/94‑1 (MQ=60)
                                                                             GTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTAT                <  SRR4302544.1229078/94‑1 (MQ=60)
                                                                              TGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATC               >  SRR4302544.1890702/1‑94 (MQ=60)
                                                                               GAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGTTGCCTGGGATGCTGAAACCAGTATCC              >  SRR4302544.3644483/1‑94 (MQ=60)
                                                                                AATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCC             >  SRR4302544.1449199/1‑94 (MQ=60)
                                                                                 ATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCT            <  SRR4302544.788774/94‑1 (MQ=60)
                                                                                   CGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGC          <  SRR4302544.3265952/94‑1 (MQ=60)
                                                                                    GCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCC         >  SRR4302544.1077253/1‑94 (MQ=60)
                                                                                    GCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCC         >  SRR4302544.2401381/1‑94 (MQ=60)
                                                                                       AGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTG      <  SRR4302544.2622406/94‑1 (MQ=60)
                                                                                       AGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTG      >  SRR4302544.2670939/1‑94 (MQ=60)
                                                                                         GTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCT    <  SRR4302544.3324378/94‑1 (MQ=60)
                                                                                         GTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCT    >  SRR4302544.1306665/1‑94 (MQ=60)
                                                                                          TAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTA   >  SRR4302544.1607983/1‑94 (MQ=60)
                                                                                           AATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  >  SRR4302544.4375497/1‑94 (MQ=60)
                                                                                           |                                                                                             
CAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  >  NC_000913/1919782‑1919966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑