Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,920,485 |
T→C |
E170G (GAA→GGA) |
b1838 ← |
protein phosphatase 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,920,485 | 0 | T | C | 99.3%
| 437.4
/ ‑5.0
| 138 | E170G (GAA→GGA) | b1838 | protein phosphatase 1 |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (79/58); total (80/58) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 |
Only 100 of 141 total aligned reads displayed.
TGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCA > NC_000913/1920395‑1920574
|
tGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCa < 2:4536459/93‑1 (MQ=255)
gCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCAc > 2:4089292/1‑93 (MQ=255)
aGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCt < 1:661598/93‑1 (MQ=255)
aGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTACCTGCCCTTTTTGGCGTCCACCt > 2:4231744/1‑93 (MQ=255)
ttGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTCAt > 2:1872209/1‑93 (MQ=255)
tGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATc > 1:4601305/1‑93 (MQ=255)
ccAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATcgc > 2:400529/1‑93 (MQ=255)
atatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAg > 1:2821047/1‑93 (MQ=255)
atatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAg > 2:4047255/1‑93 (MQ=255)
tatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGc < 2:1208004/93‑1 (MQ=255)
atCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCg > 2:1855962/1‑93 (MQ=255)
tCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCgg > 2:1781741/1‑93 (MQ=255)
tCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCgg > 2:4086746/1‑93 (MQ=255)
tCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCgg > 1:3434681/1‑93 (MQ=255)
ccACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGc < 1:4421332/93‑1 (MQ=255)
cACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCt > 2:3196681/1‑93 (MQ=255)
cACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCt > 2:455695/1‑93 (MQ=255)
aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc > 2:1665364/1‑93 (MQ=255)
aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc > 1:396555/1‑93 (MQ=255)
aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc > 1:396554/1‑93 (MQ=255)
aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc > 1:866368/1‑93 (MQ=255)
aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc > 1:1681440/1‑93 (MQ=255)
aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTGTTGGCGTCCACCTAATCGCGAGCGGCTc > 1:2668763/1‑93 (MQ=255)
aTGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACaa < 2:2128084/93‑1 (MQ=255)
aTGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACATAATCGCGAGCGGCTCCACaa > 2:2840531/1‑93 (MQ=255)
tCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAc > 2:2381339/1‑93 (MQ=255)
gCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCt < 2:1066506/93‑1 (MQ=255)
gCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCACCACAAGACCt > 2:1979583/1‑93 (MQ=255)
cAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTg < 1:2753390/93‑1 (MQ=255)
cAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGATCCACAAGACCTg > 2:4688419/1‑93 (MQ=255)
aaCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGa < 2:326636/93‑1 (MQ=255)
aCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAt < 1:376569/93‑1 (MQ=255)
cGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATg > 1:4503791/1‑93 (MQ=255)
gtgtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCa > 2:1368364/1‑93 (MQ=255)
tgtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCaa > 2:2786814/1‑93 (MQ=255)
tgtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGACGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCaa > 1:4703730/1‑93 (MQ=255)
gtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCaaa < 2:2794989/93‑1 (MQ=255)
gtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCaaa > 1:158612/1‑93 (MQ=255)
aTGACCAAACCAGAAATCATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATc < 2:3227144/93‑1 (MQ=255)
tGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCa > 1:4430024/1‑93 (MQ=255)
tGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCa > 1:1323377/1‑93 (MQ=255)
aCCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAc < 1:312216/93‑1 (MQ=255)
aCCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAc > 2:1252998/1‑93 (MQ=255)
aCCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAc < 1:2885879/93‑1 (MQ=255)
ccAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACg > 1:1106557/1‑93 (MQ=255)
aaaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTc < 1:1403262/93‑1 (MQ=255)
aaaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTc < 2:2552690/93‑1 (MQ=255)
aCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCt < 2:2330121/93‑1 (MQ=255)
aCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCt > 2:1230246/1‑93 (MQ=255)
aCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCt > 1:1890476/1‑93 (MQ=255)
ccAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtt > 1:3507090/1‑93 (MQ=255)
cAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCttt < 1:1774830/93‑1 (MQ=255)
gAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTg < 1:2683549/93‑1 (MQ=255)
aaTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGcc > 2:2310/1‑93 (MQ=255)
aTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCa > 2:4737299/1‑93 (MQ=255)
tGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAt < 1:869104/93‑1 (MQ=255)
tGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAt < 1:2606765/93‑1 (MQ=255)
gATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAtt < 1:755370/93‑1 (MQ=255)
tCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCa > 1:3556259/1‑93 (MQ=255)
cAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCAt < 2:4568755/93‑1 (MQ=255)
cAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCAt > 2:3329671/1‑93 (MQ=255)
cAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCAt > 2:719779/1‑93 (MQ=255)
aGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATa < 1:2809547/93‑1 (MQ=255)
aGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCATTTTGCCATTCATa > 2:3587824/1‑93 (MQ=255)
gCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGGGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaa > 2:2708860/1‑93 (MQ=255)
gCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaa < 1:3384315/93‑1 (MQ=255)
gCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaa < 1:4509732/93‑1 (MQ=255)
cACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaaa < 2:2177090/93‑1 (MQ=255)
cACCTATAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaaa > 2:174677/1‑93 (MQ=255)
aCCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAc < 2:4343315/93‑1 (MQ=255)
aCCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAc < 2:386410/93‑1 (MQ=255)
ccTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGTCATTCATAAAca > 2:4208147/1‑93 (MQ=255)
ccTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAca < 1:451322/93‑1 (MQ=255)
cTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcat > 1:4024285/1‑93 (MQ=255)
tGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatc > 1:1546087/1‑93 (MQ=255)
gTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatca > 2:2848983/1‑93 (MQ=255)
gTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatca < 1:2070773/93‑1 (MQ=255)
tAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatcat < 1:2360518/93‑1 (MQ=255)
tAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatcat < 1:4356809/93‑1 (MQ=255)
aaTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACatcatc > 2:1161674/1‑93 (MQ=255)
aTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCt > 1:209474/1‑93 (MQ=255)
ttCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTg > 1:4116369/1‑93 (MQ=255)
ttCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTg < 2:2034168/93‑1 (MQ=255)
tCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTgg < 2:4569075/93‑1 (MQ=255)
cccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGa > 1:3142774/1‑93 (MQ=255)
cccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGa < 2:266352/93‑1 (MQ=255)
cccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGa < 1:375676/93‑1 (MQ=255)
gCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAt > 1:1268690/1‑93 (MQ=255)
gCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAt > 2:2846230/1‑93 (MQ=255)
gCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAt > 2:2724355/1‑93 (MQ=255)
cTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCgg > 2:3498653/1‑93 (MQ=255)
cTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCgg < 2:3015646/93‑1 (MQ=255)
tttttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGc > 2:1907650/1‑93 (MQ=255)
ttttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCa < 1:2451026/93‑1 (MQ=255)
ttttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCa < 1:1390534/93‑1 (MQ=255)
ttttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCa < 2:827316/93‑1 (MQ=255)
ttgtGGCGTCCACGTAATTGCGAGCGGCTCCACAAGACCTTATGCACAGCAGAGTCCTTTTGCCAGTCATAAACATCATCTGGATAATCGGCa < 1:731937/90‑1 (MQ=255)
ttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATg < 2:1735993/93‑1 (MQ=255)
tGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGa < 1:2199032/93‑1 (MQ=255)
cGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCa < 2:4467453/93‑1 (MQ=255)
|
TGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCA > NC_000913/1920395‑1920574
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAA > NC_000913/1920398‑1920578
|
AGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTA < SRR4302544.668138/94‑1 (MQ=60)
TTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATC > SRR4302544.4647047/1‑94 (MQ=60)
TTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATC > SRR4302544.4647045/1‑94 (MQ=60)
CCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCG > SRR4302544.3458913/1‑94 (MQ=60)
AATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAG > SRR4302544.2848297/1‑94 (MQ=60)
AATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAG > SRR4302544.1440032/1‑94 (MQ=60)
TATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCG > SRR4302544.4517557/1‑94 (MQ=60)
ATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGG > SRR4302544.3467515/1‑94 (MQ=60)
CCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCT < SRR4302544.4465945/94‑1 (MQ=60)
CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC > SRR4302544.400572/1‑94 (MQ=60)
CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC > SRR4302544.1958477/1‑94 (MQ=60)
CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC > SRR4302544.400570/1‑94 (MQ=60)
CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC > SRR4302544.874939/1‑94 (MQ=60)
CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC > SRR4302544.400571/1‑94 (MQ=60)
CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC > SRR4302544.1698007/1‑94 (MQ=60)
CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTGTTGGCGTCCACCTAATCGCGAGCGGCTC > SRR4302544.2694347/1‑94 (MQ=60)
GCAGCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTG < SRR4302544.3556935/94‑1 (MQ=60)
CAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGA < SRR4302544.2779898/94‑1 (MQ=60)
AACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAT > SRR4302544.2267954/1‑94 (MQ=60)
ACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATG > SRR4302544.4548964/1‑94 (MQ=60)
ACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATG < SRR4302544.380410/94‑1 (MQ=60)
ACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCATGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATG > SRR4302544.405526/1‑94 (MQ=60)
GTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGACGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAA > SRR4302544.4750218/1‑94 (MQ=60)
TGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAA > SRR4302544.160164/1‑94 (MQ=60)
ATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCA > SRR4302544.4474722/1‑94 (MQ=60)
ATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCA > SRR4302544.1336395/1‑94 (MQ=60)
ACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACG < SRR4302544.315461/94‑1 (MQ=60)
ACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACG < SRR4302544.2913710/94‑1 (MQ=60)
ACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACG > SRR4302544.1117585/1‑94 (MQ=60)
AAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCC < SRR4302544.1417237/94‑1 (MQ=60)
AACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCT > SRR4302544.1908739/1‑94 (MQ=60)
ACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTT > SRR4302544.3540542/1‑94 (MQ=60)
CAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTT < SRR4302544.1792199/94‑1 (MQ=60)
GAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGC < SRR4302544.2709264/94‑1 (MQ=60)
GAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGC < SRR4302544.2709263/94‑1 (MQ=60)
ATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAT > SRR4302544.633350/1‑94 (MQ=60)
ATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATCCAAATCAACGTCCTTTTGCCAT > SRR4302544.2925945/1‑94 (MQ=60)
TGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATT < SRR4302544.2631803/94‑1 (MQ=60)
TGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATT < SRR4302544.877714/94‑1 (MQ=60)
GATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTC > SRR4302544.4419424/1‑94 (MQ=60)
GATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTC < SRR4302544.762749/94‑1 (MQ=60)
ATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCA > SRR4302544.3590340/1‑94 (MQ=60)
TCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCAT < SRR4302544.256375/94‑1 (MQ=60)
AGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAA < SRR4302544.2836653/94‑1 (MQ=60)
GCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAA < SRR4302544.4554939/94‑1 (MQ=60)
GCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAA < SRR4302544.3416648/94‑1 (MQ=60)
ACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACA > SRR4302544.13705/1‑94 (MQ=60)
CCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACAT < SRR4302544.455797/94‑1 (MQ=60)
CCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACAT > SRR4302544.4064363/1‑94 (MQ=60)
CTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATC > SRR4302544.1561484/1‑94 (MQ=60)
GTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCAT < SRR4302544.2090665/94‑1 (MQ=60)
TAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATC < SRR4302544.4401039/94‑1 (MQ=60)
TAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATC < SRR4302544.2382867/94‑1 (MQ=60)
AATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCT > SRR4302544.211632/1‑94 (MQ=60)
ATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTG > SRR4302544.4157251/1‑94 (MQ=60)
TCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGA > SRR4302544.3172653/1‑94 (MQ=60)
CCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGAT < SRR4302544.379510/94‑1 (MQ=60)
CCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGAT < SRR4302544.922367/94‑1 (MQ=60)
TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT > SRR4302544.1281167/1‑94 (MQ=60)
TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT < SRR4302544.2846811/94‑1 (MQ=60)
GCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATC < SRR4302544.754824/94‑1 (MQ=60)
TTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCAT < SRR4302544.2474404/94‑1 (MQ=60)
TTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCAT < SRR4302544.1404414/94‑1 (MQ=60)
TTGTGGCGTCCACGTAATTGCGAGCGGCTCCACAAGACCTTATGCACAGCAGAGTCCTTTTGCCAGTCATAAACATCATCTGGATAATCGGCAT < SRR4302544.739098/94‑1 (MQ=46)
TGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAG < SRR4302544.2219761/94‑1 (MQ=60)
TGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAG < SRR4302544.1765168/94‑1 (MQ=60)
CGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAA > SRR4302544.2599317/1‑94 (MQ=60)
GTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCACATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAAT > SRR4302544.3260300/1‑94 (MQ=60)
GTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAAT > SRR4302544.3859912/1‑94 (MQ=60)
TCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA > SRR4302544.320254/1‑94 (MQ=60)
CCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAA > SRR4302544.1882847/1‑94 (MQ=60)
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AGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAA > NC_000913/1920398‑1920578
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
