Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,920,485 T→C E170G (GAA→GGA)  b1838 ← protein phosphatase 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,920,4850TC100.0% 704.0 / NA 219E170G (GAA→GGA) b1838protein phosphatase 1
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (112/107);  total (112/107)

Only 100 of 220 total aligned reads displayed.

TGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGC  >  NC_000913/1920395‑1920573
                                                                                          |                                                                                        
tGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCa                                                                                        <  1:3588153/93‑1 (MQ=255)
  cAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCAcc                                                                                      >  1:29980/1‑93 (MQ=255)
   aGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCt                                                                                     >  1:4528709/1‑93 (MQ=255)
    ggTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTa                                                                                    <  2:2854155/93‑1 (MQ=255)
    ggTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTa                                                                                    >  2:6662013/1‑93 (MQ=255)
     gTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTaa                                                                                   <  1:507777/93‑1 (MQ=255)
      ttGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAAt                                                                                  <  2:3207236/93‑1 (MQ=255)
       tGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATc                                                                                 <  1:4036133/93‑1 (MQ=255)
       tGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATc                                                                                 <  1:2724549/93‑1 (MQ=255)
           aaTATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGa                                                                             >  1:5778938/1‑93 (MQ=255)
            atatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAg                                                                            >  1:1285465/1‑93 (MQ=255)
            atatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAg                                                                            <  2:1207139/93‑1 (MQ=255)
            atatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAg                                                                            <  1:265156/93‑1 (MQ=255)
               tCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCgg                                                                         >  2:2221467/1‑93 (MQ=255)
                ccACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTCATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGc                                                                        >  1:4791399/1‑93 (MQ=255)
                ccACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGc                                                                        >  1:3908745/1‑93 (MQ=255)
                ccACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGc                                                                        <  1:6479384/93‑1 (MQ=255)
                ccACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGc                                                                        <  2:6185634/93‑1 (MQ=255)
                ccACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGc                                                                        <  1:4171592/93‑1 (MQ=255)
                 cACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCt                                                                       <  1:895517/93‑1 (MQ=255)
                  aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc                                                                      >  2:2382054/1‑93 (MQ=255)
                   cgcgATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTcc                                                                     <  1:4603005/93‑1 (MQ=255)
                      gATGTCGCAACGGCGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGCGTCcaca                                                                  >  1:1631554/1‑93 (MQ=255)
                      gATCTCGCAACGGGGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCcaca                                                                  >  1:4706783/1‑93 (MQ=255)
                       aTGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACaa                                                                 <  1:2589707/93‑1 (MQ=255)
                            gCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAccg                                                            >  1:819412/1‑92 (MQ=255)
                             cAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTg                                                           <  2:4458200/93‑1 (MQ=255)
                              aaCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGa                                                          <  1:5446399/93‑1 (MQ=255)
                               aCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAt                                                         >  1:2312709/1‑93 (MQ=255)
                               aCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAAATCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAt                                                         >  1:1953761/1‑93 (MQ=255)
                                cGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATg                                                        <  1:5887008/93‑1 (MQ=255)
                                    gtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCaaa                                                    <  2:5170686/93‑1 (MQ=255)
                                    gtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCaaa                                                    >  1:5421000/1‑93 (MQ=255)
                                    gtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCaaa                                                    <  2:6487159/93‑1 (MQ=255)
                                     tATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAAt                                                   >  2:3046369/1‑93 (MQ=255)
                                      aTGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAAta                                                  >  2:5290526/1‑92 (MQ=255)
                                      aTGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATc                                                  <  2:2824791/93‑1 (MQ=255)
                                      aTGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATc                                                  >  2:5866781/1‑93 (MQ=255)
                                        gACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCaa                                                >  1:3475930/1‑93 (MQ=255)
                                        gACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCaa                                                <  2:4629980/93‑1 (MQ=255)
                                        gACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCaa                                                <  2:784690/93‑1 (MQ=255)
                                        gACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCaa                                                <  2:5403096/93‑1 (MQ=255)
                                        gACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCaa                                                <  1:4001655/93‑1 (MQ=255)
                                        gACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCaa                                                <  1:4638034/93‑1 (MQ=255)
                                         aCCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAc                                               >  1:1372495/1‑93 (MQ=255)
                                          ccAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACg                                              <  2:2048967/93‑1 (MQ=255)
                                           cAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCCAATCAACGt                                             >  1:3243178/1‑93 (MQ=255)
                                            aaaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTc                                            >  1:4908952/1‑93 (MQ=255)
                                            aaaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTc                                            >  2:6323717/1‑93 (MQ=255)
                                            aaaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATAAACGTc                                            >  1:3619998/1‑93 (MQ=255)
                                             aaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTcc                                           >  2:1894455/1‑93 (MQ=255)
                                              aCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCt                                          <  1:2110925/93‑1 (MQ=255)
                                               ccAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAAACCTGATGCAAATCAACGTCCtt                                         >  1:5617693/1‑93 (MQ=255)
                                                cAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCttt                                        >  1:2227737/1‑93 (MQ=255)
                                                cAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCttt                                        <  2:5452405/93‑1 (MQ=255)
                                                cAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCttt                                        <  2:3438588/93‑1 (MQ=255)
                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                       <  1:3058486/93‑1 (MQ=255)
                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                       <  2:2553229/93‑1 (MQ=255)
                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                       <  1:5319545/93‑1 (MQ=255)
                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                       <  2:5581014/93‑1 (MQ=255)
                                                  gAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTg                                      >  1:2787261/1‑93 (MQ=255)
                                                   aaaTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGc                                     >  2:5033146/1‑93 (MQ=255)
                                                   aaaTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGc                                     <  2:3332732/93‑1 (MQ=255)
                                                     aTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCa                                   >  2:6071517/1‑93 (MQ=255)
                                                     aTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCa                                   <  2:3883990/93‑1 (MQ=255)
                                                     aTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCa                                   >  1:5070664/1‑93 (MQ=255)
                                                     aTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCa                                   >  1:2612066/1‑93 (MQ=255)
                                                       gATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAtt                                 >  2:5986137/1‑93 (MQ=255)
                                                        aTCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTc                                >  1:1977363/1‑93 (MQ=255)
                                                         tCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCa                               <  2:1786210/93‑1 (MQ=255)
                                                            gCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaa                            >  1:1826321/1‑93 (MQ=255)
                                                             cACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaaa                           <  1:1234889/93‑1 (MQ=255)
                                                             cACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaaa                           <  2:3785970/93‑1 (MQ=255)
                                                               ccTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAca                         <  1:1429925/93‑1 (MQ=255)
                                                               ccTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAca                         >  1:1484972/1‑93 (MQ=255)
                                                               ccTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAca                         <  1:6704275/93‑1 (MQ=255)
                                                               ccTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAca                         >  1:5931520/1‑93 (MQ=255)
                                                                cTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcat                        >  2:598132/1‑93 (MQ=255)
                                                                cTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcat                        >  2:4243236/1‑93 (MQ=255)
                                                                  gTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAGTCATAAAcatca                      <  2:3591942/93‑1 (MQ=255)
                                                                     aTTCCCTGCCCTTTTTGGCGTCCGCCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCt                   <  2:4032917/93‑1 (MQ=255)
                                                                     aTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCt                   >  2:824443/1‑93 (MQ=255)
                                                                     aTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCt                   <  1:3083255/93‑1 (MQ=255)
                                                                      ttCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTg                  <  1:6057157/93‑1 (MQ=255)
                                                                        cccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGa                >  1:2196061/1‑93 (MQ=255)
                                                                         ccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGAt               <  1:1004834/93‑1 (MQ=255)
                                                                          cTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATa              <  1:3217169/93‑1 (MQ=255)
                                                                          cTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATa              <  2:2634630/93‑1 (MQ=255)
                                                                           tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa             <  1:6118679/93‑1 (MQ=255)
                                                                           tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa             <  1:4083271/93‑1 (MQ=255)
                                                                           tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCAATTCATAAACATCATCTGGATaa             >  1:1808787/1‑93 (MQ=255)
                                                                            gCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAt            <  2:4348223/93‑1 (MQ=255)
                                                                              ccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCg          <  1:6386159/93‑1 (MQ=255)
                                                                              ccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCg          >  2:6262139/1‑93 (MQ=255)
                                                                              ccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCg          >  1:2381677/1‑93 (MQ=255)
                                                                              ccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCg          >  1:1143756/1‑93 (MQ=255)
                                                                               cTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCgg         >  1:3652167/1‑93 (MQ=255)
                                                                                tttttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGc        <  2:3099385/93‑1 (MQ=255)
                                                                                     ggCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAg   >  2:2138892/1‑93 (MQ=255)
                                                                                     ggCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAg   >  1:2539727/1‑93 (MQ=255)
                                                                                          |                                                                                        
TGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGC  >  NC_000913/1920395‑1920573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA  >  NC_000913/1920393‑1920577
                                                                                            |                                                                                            
AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCC                                                                                             >  SRR4302536.4972595/1‑94 (MQ=60)
AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCC                                                                                             <  SRR4302536.111377/94‑1 (MQ=60)
AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCC                                                                                             >  SRR4302536.2112492/1‑94 (MQ=60)
 ATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCA                                                                                            <  SRR4302536.3629127/94‑1 (MQ=60)
 ATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCA                                                                                            <  SRR4302536.2238669/94‑1 (MQ=60)
 ATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCA                                                                                            <  SRR4302536.6002299/94‑1 (MQ=60)
  TGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCAC                                                                                           <  SRR4302536.3695483/94‑1 (MQ=60)
   GCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACC                                                                                          >  SRR4302536.30805/1‑94 (MQ=60)
    CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT                                                                                         <  SRR4302536.2616335/94‑1 (MQ=60)
    CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT                                                                                         <  SRR4302536.48273/94‑1 (MQ=60)
    CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT                                                                                         <  SRR4302536.1511765/94‑1 (MQ=60)
    CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT                                                                                         >  SRR4302536.4664481/1‑94 (MQ=60)
    CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT                                                                                         >  SRR4302536.5519398/1‑94 (MQ=60)
    CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT                                                                                         >  SRR4302536.3408996/1‑94 (MQ=60)
     AGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTA                                                                                        <  SRR4302536.5354196/94‑1 (MQ=60)
      GGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAA                                                                                       >  SRR4302536.1270864/1‑94 (MQ=60)
       GTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAAT                                                                                      <  SRR4302536.520807/94‑1 (MQ=60)
        TTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATC                                                                                     <  SRR4302536.5302111/94‑1 (MQ=60)
         TGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCG                                                                                    <  SRR4302536.4155818/94‑1 (MQ=60)
         TGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCG                                                                                    >  SRR4302536.2668522/1‑94 (MQ=60)
         TGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCG                                                                                    <  SRR4302536.2805792/94‑1 (MQ=60)
         TGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCG                                                                                    <  SRR4302536.3167801/94‑1 (MQ=60)
          GCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGC                                                                                   >  SRR4302536.2785307/1‑94 (MQ=60)
            CAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGA                                                                                 >  SRR4302536.4178791/1‑94 (MQ=60)
            CAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGA                                                                                 >  SRR4302536.5950917/1‑94 (MQ=60)
             AATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAG                                                                                >  SRR4302536.5163179/1‑94 (MQ=60)
             AATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAG                                                                                >  SRR4302536.1323928/1‑94 (MQ=60)
              ATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGC                                                                               <  SRR4302536.269027/94‑1 (MQ=60)
              ATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGC                                                                               <  SRR4302536.272237/94‑1 (MQ=60)
              ATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGC                                                                               >  SRR4302536.2557776/1‑94 (MQ=60)
              ATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGC                                                                               >  SRR4302536.6688297/1‑94 (MQ=60)
               TATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGTCGTCCACCTAATCGCGAGCG                                                                              >  SRR4302536.5606685/1‑94 (MQ=60)
                ATCCACGCGATGTCGCAACGCGGGATGACCAAACCAGAAATGATCAGCACCTGTAATGCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGG                                                                             >  SRR4302536.718602/1‑94 (MQ=60)
                 TCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTCATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGC                                                                            >  SRR4302536.4935633/1‑94 (MQ=60)
                 TCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGC                                                                            >  SRR4302536.4024913/1‑94 (MQ=60)
                  CCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCT                                                                           <  SRR4302536.4295523/94‑1 (MQ=60)
                  CCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCT                                                                           >  SRR4302536.3703007/1‑94 (MQ=60)
                  CCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCT                                                                           <  SRR4302536.6672684/94‑1 (MQ=60)
                   CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC                                                                          >  SRR4302536.166925/1‑94 (MQ=60)
                   CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC                                                                          <  SRR4302536.921902/94‑1 (MQ=60)
                    ACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCC                                                                         <  SRR4302536.5777992/94‑1 (MQ=60)
                     CGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCA                                                                        <  SRR4302536.4741244/94‑1 (MQ=60)
                     CGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCA                                                                        >  SRR4302536.1939236/1‑94 (MQ=60)
                       CGATGTCGCAACGGCGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGCGTCCACA                                                                      >  SRR4302536.1679044/1‑94 (MQ=60)
                       CGATCTCGCAACGGGGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACA                                                                      >  SRR4302536.4848337/1‑94 (MQ=60)
                        GATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAA                                                                     >  SRR4302536.1451820/1‑94 (MQ=60)
                        GATGTCGCAACGGGGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCGACCTAATCGCGAGCGGCTGCGCAA                                                                     >  SRR4302536.1755430/1‑94 (MQ=60)
                         ATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAG                                                                    <  SRR4302536.2667482/94‑1 (MQ=60)
                         ATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAG                                                                    >  SRR4302536.2322966/1‑94 (MQ=60)
                         ATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAG                                                                    <  SRR4302536.2255157/94‑1 (MQ=60)
                           GTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAC                                                                  <  SRR4302536.304541/94‑1 (MQ=60)
                           GTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAC                                                                  <  SRR4302536.3205110/94‑1 (MQ=60)
                             CGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCT                                                                <  SRR4302536.6598778/94‑1 (MQ=60)
                             CGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCT                                                                >  SRR4302536.2825747/1‑94 (MQ=60)
                             CGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCT                                                                <  SRR4302536.4737908/94‑1 (MQ=60)
                             CGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCG                                                                >  SRR4302536.843529/1‑94 (MQ=60)
                              GCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTG                                                               >  SRR4302536.419047/1‑94 (MQ=60)
                               CAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGA                                                              <  SRR4302536.1062958/94‑1 (MQ=60)
                               CAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTACACAAGACCTGA                                                              >  SRR4302536.6267714/1‑94 (MQ=60)
                                AACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAT                                                             <  SRR4302536.5609316/94‑1 (MQ=60)
                                AACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAT                                                             >  SRR4302536.2382904/1‑94 (MQ=60)
                                AACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAT                                                             <  SRR4302536.2422634/94‑1 (MQ=60)
                                AACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAAATCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAT                                                             >  SRR4302536.2012512/1‑94 (MQ=60)
                                  CGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGC                                                           <  SRR4302536.6062340/94‑1 (MQ=60)
                                  CGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGC                                                           <  SRR4302536.4741500/94‑1 (MQ=60)
                                     TGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAA                                                        >  SRR4302536.5583047/1‑94 (MQ=60)
                                      GTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAAT                                                       >  SRR4302536.3147842/1‑94 (MQ=60)
                                      GTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAAT                                                       >  SRR4302536.3653294/1‑94 (MQ=60)
                                      GTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAAT                                                       >  SRR4302536.3740865/1‑94 (MQ=60)
                                       TATGACCAAGCCAGAAATGATCAGCACCTGTAATGCCCTGCCCGTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATC                                                      <  SRR4302536.906572/94‑1 (MQ=60)
                                         TGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAA                                                    >  SRR4302536.3579541/1‑94 (MQ=60)
                                          GACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAC                                                   >  SRR4302536.6183656/1‑94 (MQ=60)
                                          GACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAC                                                   <  SRR4302536.4777426/94‑1 (MQ=60)
                                          GACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAC                                                   >  SRR4302536.1413391/1‑94 (MQ=60)
                                          GACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAC                                                   <  SRR4302536.4120392/94‑1 (MQ=60)
                                            CCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCCAATCAACGT                                                 >  SRR4302536.3338236/1‑94 (MQ=60)
                                             CAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTC                                                >  SRR4302536.2345526/1‑94 (MQ=60)
                                             CAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTC                                                >  SRR4302536.5056520/1‑94 (MQ=60)
                                             CAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTC                                                <  SRR4302536.6478136/94‑1 (MQ=60)
                                             CAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATAAACGTC                                                >  SRR4302536.3728228/1‑94 (MQ=60)
                                              AAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCC                                               >  SRR4302536.3711822/1‑94 (MQ=60)
                                                ACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTT                                             <  SRR4302536.2174360/94‑1 (MQ=60)
                                                ACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTT                                             <  SRR4302536.5224515/94‑1 (MQ=60)
                                                ACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAAACCTGATGCAAATCAACGTCCTT                                             >  SRR4302536.5784563/1‑94 (MQ=60)
                                                 CCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTT                                            >  SRR4302536.2295109/1‑94 (MQ=60)
                                                   AGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTG                                          >  SRR4302536.2870027/1‑94 (MQ=60)
                                                   AGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTG                                          <  SRR4302536.5478453/94‑1 (MQ=60)
                                                   AGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTG                                          <  SRR4302536.3148258/94‑1 (MQ=60)
                                                      AATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCA                                       <  SRR4302536.2266822/94‑1 (MQ=60)
                                                      AATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCA                                       >  SRR4302536.5222481/1‑94 (MQ=60)
                                                      AATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCA                                       <  SRR4302536.4226288/94‑1 (MQ=60)
                                                      AATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCA                                       >  SRR4302536.2690443/1‑94 (MQ=60)
                                                       ATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAT                                      >  SRR4302536.4412214/1‑94 (MQ=60)
                                                       ATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAT                                      <  SRR4302536.2015728/94‑1 (MQ=60)
                                                       ATAATCAGCTCCTTTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGTCTCCACAAGCCCTGATGCAAATCAACGTCCTTTTGCAAT                                      <  SRR4302536.4186971/94‑1 (MQ=60)
                                                         GATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTC                                    >  SRR4302536.2036820/1‑94 (MQ=60)
                                                         GATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTC                                    <  SRR4302536.332490/94‑1 (MQ=60)
                                                          ATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCA                                   >  SRR4302536.4834550/1‑94 (MQ=60)
                                                           TCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCAT                                  >  SRR4302536.2107746/1‑94 (MQ=60)
                                                             AGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAA                                <  SRR4302536.5988041/94‑1 (MQ=60)
                                                             AGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAA                                >  SRR4302536.1881398/1‑94 (MQ=60)
                                                               CACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAC                              <  SRR4302536.1271963/94‑1 (MQ=60)
                                                                ACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACA                             >  SRR4302536.2722743/1‑94 (MQ=60)
                                                                ACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACA                             >  SRR4302536.1528842/1‑94 (MQ=60)
                                                                ACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACA                             >  SRR4302536.6108204/1‑94 (MQ=60)
                                                                 CCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACAT                            <  SRR4302536.4929365/94‑1 (MQ=60)
                                                                 CCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACAT                            <  SRR4302536.1472392/94‑1 (MQ=60)
                                                                 CCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACAT                            <  SRR4302536.6903373/94‑1 (MQ=60)
                                                                 CCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACAT                            >  SRR4302536.1303818/1‑94 (MQ=60)
                                                                 CCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACAT                            >  SRR4302536.4135198/1‑94 (MQ=60)
                                                                    GTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCAT                         <  SRR4302536.1359922/94‑1 (MQ=60)
                                                                      AATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCT                       <  SRR4302536.6052681/94‑1 (MQ=60)
                                                                       ATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTG                      <  SRR4302536.3173454/94‑1 (MQ=60)
                                                                        TTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGG                     <  SRR4302536.6237855/94‑1 (MQ=60)
                                                                        TTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGG                     >  SRR4302536.6082845/1‑94 (MQ=60)
                                                                         TCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGA                    >  SRR4302536.2262348/1‑94 (MQ=60)
                                                                           CCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTTGATA                  >  SRR4302536.5912853/1‑94 (MQ=60)
                                                                           CCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATA                  <  SRR4302536.1034487/94‑1 (MQ=60)
                                                                            CTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAA                 <  SRR4302536.3311522/94‑1 (MQ=60)
                                                                            CTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCAATTCATAAACATCATCTGGATAA                 >  SRR4302536.1863363/1‑94 (MQ=60)
                                                                             TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT                <  SRR4302536.6301048/94‑1 (MQ=60)
                                                                             TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT                <  SRR4302536.3151515/94‑1 (MQ=60)
                                                                             TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT                <  SRR4302536.4204323/94‑1 (MQ=60)
                                                                               CCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCG              >  SRR4302536.1442581/1‑94 (MQ=60)
                                                                               CCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCG              >  SRR4302536.1178155/1‑94 (MQ=60)
                                                                               CCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCG              >  SRR4302536.4070622/1‑94 (MQ=60)
                                                                               CCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCG              >  SRR4302536.2453822/1‑94 (MQ=60)
                                                                                CCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGG             <  SRR4302536.186100/94‑1 (MQ=60)
                                                                                CCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGG             >  SRR4302536.3761356/1‑94 (MQ=60)
                                                                                CCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGG             <  SRR4302536.6650709/94‑1 (MQ=60)
                                                                                CCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGG             <  SRR4302536.6576680/94‑1 (MQ=60)
                                                                                CCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGG             >  SRR4302536.192091/1‑94 (MQ=60)
                                                                                 CTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGC            >  SRR4302536.3883513/1‑94 (MQ=60)
                                                                                      TGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAG       >  SRR4302536.2616244/1‑94 (MQ=60)
                                                                                       GGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGC      >  SRR4302536.5050036/1‑94 (MQ=60)
                                                                                         CGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATacctta    >  SRR4302536.3435130/1‑88 (MQ=60)
                                                                                          GTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAAT   >  SRR4302536.3532917/1‑94 (MQ=60)
                                                                                           TCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA  <  SRR4302536.4171482/94‑1 (MQ=60)
                                                                                           TCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA  >  SRR4302536.6212612/1‑94 (MQ=60)
                                                                                           TCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA  >  SRR4302536.968443/1‑94 (MQ=60)
                                                                                            |                                                                                            
AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA  >  NC_000913/1920393‑1920577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑