Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,919,873	G→A	D24N (GAT→AAT)	b1836 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,919,873	0	G	A	100.0%	846.8 / NA	232	D24N (GAT→AAT)	b1836	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (110/122); total (110/122)

Only 100 of 233 total aligned reads displayed.

AGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTG  >  NC_000913/1919783‑1919962

aGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAt                                                                                         <  1:597896/93‑1 (MQ=255)

 gCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATc                                                                                        <  2:5256380/93‑1 (MQ=255)

    aaaTGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGaa                                                                                     <  2:159159/93‑1 (MQ=255)

    aaaTGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGaa                                                                                     >  1:6591898/1‑93 (MQ=255)

     aaTGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAAc                                                                                    <  1:2707487/93‑1 (MQ=255)

       tGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGt                                                                                  <  2:1735099/93‑1 (MQ=255)

       tGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGt                                                                                  >  2:5417225/1‑93 (MQ=255)

         gagaGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTa                                                                                <  1:1406670/93‑1 (MQ=255)

         gagaGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTa                                                                                >  2:203511/1‑93 (MQ=255)

         gagaGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTa                                                                                >  1:2809172/1‑93 (MQ=255)

           gagCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAc                                                                              >  2:3748067/1‑93 (MQ=255)

            agCACGAATATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAGCGAACGTTAAcc                                                                             <  1:2125575/93‑1 (MQ=255)

            agCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAcc                                                                             <  2:3728586/93‑1 (MQ=255)

            agCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAcc                                                                             <  1:171822/93‑1 (MQ=255)

             gCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCa                                                                            >  1:447972/1‑93 (MQ=255)

              cACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCAt                                                                           >  1:3869563/1‑93 (MQ=255)

               aCGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCAtt                                                                          >  1:3734079/1‑93 (MQ=255)

                  aaGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACATGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCt                                                                       <  2:143979/93‑1 (MQ=255)

                  aaGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCt                                                                       <  1:2984500/93‑1 (MQ=255)

                  aaGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCt                                                                       <  1:1238440/93‑1 (MQ=255)

                   aGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCtt                                                                      >  1:647952/1‑93 (MQ=255)

                    gATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTg                                                                     >  2:4189720/1‑93 (MQ=255)

                    gATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTg                                                                     <  1:1514077/93‑1 (MQ=255)

                      tGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTa                                                                   >  2:625196/1‑93 (MQ=255)

                       gAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaa                                                                  >  1:3180205/1‑93 (MQ=255)

                       gAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaa                                                                  >  1:5721416/1‑93 (MQ=255)

                       gAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaa                                                                  >  2:6373465/1‑93 (MQ=255)

                       gAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaa                                                                  >  1:810291/1‑93 (MQ=255)

                        aaaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaaa                                                                 <  2:1515927/93‑1 (MQ=255)

                        aaaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaaa                                                                 >  1:2327198/1‑93 (MQ=255)

                        aaaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaaa                                                                 <  1:4687814/93‑1 (MQ=255)

                         aaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAAt                                                                >  1:450626/1‑93 (MQ=255)

                          aaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATc                                                               >  1:4196515/1‑93 (MQ=255)

                           aCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCt                                                              <  1:1614439/93‑1 (MQ=255)

                            ccAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTg                                                             <  1:5137478/93‑1 (MQ=255)

                             cAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGa                                                            >  2:4486322/1‑93 (MQ=255)

                             cAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGa                                                            >  2:6109928/1‑93 (MQ=255)

                              aGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAc                                                           <  1:1002173/93‑1 (MQ=255)

                               gtgtCCACATAAGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCCAACGTTAACCATTCCTTGTAAATCTGAcc                                                          <  2:3189113/93‑1 (MQ=255)

                                 gtgCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAcccc                                                        <  1:6390335/93‑1 (MQ=255)

                                    cgcATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGAt                                                     <  1:3980199/93‑1 (MQ=255)

                                     gcATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGAtt                                                    <  2:842342/93‑1 (MQ=255)

                                      cATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGAttt                                                   >  2:1332656/1‑93 (MQ=255)

                                      cATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGAttt                                                   >  1:3586769/1‑93 (MQ=255)

                                       aTAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTta                                                  >  1:1167746/1‑93 (MQ=255)

                                       aTAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTta                                                  <  1:6066735/93‑1 (MQ=255)

                                        tAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtat                                                 <  1:6290317/93‑1 (MQ=255)

                                          ggCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgt                                               <  2:3489945/93‑1 (MQ=255)

                                          ggCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgt                                               <  2:586320/93‑1 (MQ=255)

                                          ggCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgt                                               >  2:5669332/1‑93 (MQ=255)

                                          ggCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgt                                               >  2:2811942/1‑93 (MQ=255)

                                          ggCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgt                                               <  1:5643599/93‑1 (MQ=255)

                                           gcgcTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgta                                              >  2:1016304/1‑93 (MQ=255)

                                             gcTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgtatg                                            >  1:5580359/1‑93 (MQ=255)

                                             gcTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgtatg                                            <  1:1863067/93‑1 (MQ=255)

                                               ttttGAAATCGACGACGGCGAATTATACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCa                                          >  1:507292/1‑93 (MQ=255)

                                                 ttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAAc                                        <  1:6660560/93‑1 (MQ=255)

                                                  tGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACt                                       <  2:6023150/93‑1 (MQ=255)

                                                   gAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTg                                      >  2:343755/1‑93 (MQ=255)

                                                    aaaTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCAGATTTATGTATGCAACTgg                                     >  1:5876095/1‑93 (MQ=255)

                                                     aaTCGACGACGGCGAATTACACGGTGAATCTCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGa                                    <  2:3890995/93‑1 (MQ=255)

                                                     aaTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGa                                    <  1:4180304/93‑1 (MQ=255)

                                                     aaTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGa                                    <  2:2754944/93‑1 (MQ=255)

                                                     aaTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGa                                    <  2:4406335/93‑1 (MQ=255)

                                                     aaTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGa                                    <  2:5496747/93‑1 (MQ=255)

                                                      aTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGag                                   >  1:4120340/1‑92 (MQ=255)

                                                      aTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAt                                   >  2:3096991/1‑93 (MQ=255)

                                                      aTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAt                                   >  1:837341/1‑93 (MQ=255)

                                                       tCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATg                                  >  1:2554813/1‑93 (MQ=255)

                                                        cgacgaCGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGc                                 <  1:3903984/93‑1 (MQ=255)

                                                         gacgacGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGcc                                >  1:2943207/1‑93 (MQ=255)

                                                          acgacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCt                               <  2:6611840/93‑1 (MQ=255)

                                                          acgacgGCGAATGACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCt                               <  2:943377/93‑1 (MQ=255)

                                                           cgacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTg                              <  1:6207634/93‑1 (MQ=255)

                                                           cgacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTg                              <  1:2762034/93‑1 (MQ=255)

                                                            gacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTgg                             <  1:5427551/93‑1 (MQ=255)

                                                            gacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTgg                             <  2:6577406/93‑1 (MQ=255)

                                                             acgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTggg                            >  1:4642302/1‑93 (MQ=255)

                                                              cgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGa                           <  1:2245108/93‑1 (MQ=255)

                                                               ggCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAt                          <  2:783537/93‑1 (MQ=255)

                                                               ggCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAt                          <  1:5531509/93‑1 (MQ=255)

                                                                 cGAATTACACGGTGAATCGCCAGGTAATCGAACGTGAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGc                        <  1:1324031/93‑1 (MQ=255)

                                                                  gAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCt                       >  1:6441674/1‑93 (MQ=255)

                                                                    aTTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGa                     >  1:4756433/1‑93 (MQ=255)

                                                                     ttACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGaa                    >  1:5252363/1‑93 (MQ=255)

                                                                         acGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCa                >  2:2970276/1‑93 (MQ=255)

                                                                          cGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAg               >  1:4371862/1‑93 (MQ=255)

                                                                          cGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAg               >  2:6515309/1‑93 (MQ=255)

                                                                           ggTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGt              <  2:3950423/93‑1 (MQ=255)

                                                                            gTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTa             <  2:4745183/93‑1 (MQ=255)

                                                                            gTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTa             <  2:5542233/93‑1 (MQ=255)

                                                                             tGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTAt            >  2:1283876/1‑93 (MQ=255)

                                                                              gAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATc           <  1:3485750/93‑1 (MQ=255)

                                                                                aTCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccc         <  2:3388605/93‑1 (MQ=255)

                                                                                aTCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccc         <  2:3821676/93‑1 (MQ=255)

                                                                                    ccAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgcc     <  2:2535228/93‑1 (MQ=255)

                                                                                     cAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgccc    <  2:2406611/93‑1 (MQ=255)

                                                                                      aGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgccct   >  2:2123945/1‑93 (MQ=255)

                                                                                      aGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgccct   >  2:4151806/1‑93 (MQ=255)

                                                                                      aGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgccct   <  2:3868285/93‑1 (MQ=255)

AGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTG  >  NC_000913/1919783‑1919962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  >  NC_000913/1919781‑1919966

GCAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAA                                                                                              <  SRR4302536.2517157/94‑1 (MQ=60)

 CAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAT                                                                                             <  SRR4302536.3782104/94‑1 (MQ=60)

 CAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAT                                                                                             >  SRR4302536.1442184/1‑94 (MQ=60)

  AGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATC                                                                                            <  SRR4302536.614759/94‑1 (MQ=60)

  AGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATC                                                                                            >  SRR4302536.4823644/1‑94 (MQ=60)

   GCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCG                                                                                           <  SRR4302536.4925427/94‑1 (MQ=60)

     TAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAA                                                                                         >  SRR4302536.6787991/1‑94 (MQ=60)

      AAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAAC                                                                                        <  SRR4302536.21163/94‑1 (MQ=60)

      AAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAAC                                                                                        >  SRR4302536.6922624/1‑94 (MQ=60)

      AAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAAC                                                                                        <  SRR4302536.3537758/94‑1 (MQ=60)

       AATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACG                                                                                       <  SRR4302536.2788264/94‑1 (MQ=60)

       AATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACG                                                                                       >  SRR4302536.6639826/1‑94 (MQ=60)

         TGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTT                                                                                     >  SRR4302536.6322665/1‑94 (MQ=60)

         TGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTT                                                                                     >  SRR4302536.1897328/1‑94 (MQ=60)

          GGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTA                                                                                    >  SRR4302536.2892454/1‑94 (MQ=60)

           GAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAA                                                                                   <  SRR4302536.1448513/94‑1 (MQ=60)

            AGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAC                                                                                  >  SRR4302536.2413063/1‑94 (MQ=60)

             GAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACC                                                                                 <  SRR4302536.4006476/94‑1 (MQ=60)

             GAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACC                                                                                 <  SRR4302536.1194192/94‑1 (MQ=60)

              AGCACGAATATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAGCGAACGTTAACCA                                                                                <  SRR4302536.2189417/94‑1 (MQ=60)

              AGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATTGAACGTTAACCA                                                                                >  SRR4302536.5254559/1‑94 (MQ=60)

              AGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCA                                                                                <  SRR4302536.176312/94‑1 (MQ=60)

              AGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCA                                                                                >  SRR4302536.459745/1‑94 (MQ=60)

               GCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCAT                                                                               >  SRR4302536.3984685/1‑94 (MQ=60)

                CACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATT                                                                              <  SRR4302536.4633004/94‑1 (MQ=60)

                CACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATT                                                                              <  SRR4302536.666740/94‑1 (MQ=60)

                CACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATT                                                                              >  SRR4302536.3845684/1‑94 (MQ=60)

                  CGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCC                                                                            >  SRR4302536.37653/1‑94 (MQ=60)

                  CGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCC                                                                            <  SRR4302536.43054/94‑1 (MQ=60)

                  CGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCC                                                                            <  SRR4302536.2709672/94‑1 (MQ=60)

                  CGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCC                                                                            <  SRR4302536.1739542/94‑1 (MQ=60)

                   GAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCT                                                                           >  SRR4302536.3665238/1‑94 (MQ=60)

                   GAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCT                                                                           <  SRR4302536.420568/94‑1 (MQ=60)

                    AAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTT                                                                          <  SRR4302536.1275632/94‑1 (MQ=60)

                    AAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTT                                                                          >  SRR4302536.667011/1‑94 (MQ=60)

                    AAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTT                                                                          <  SRR4302536.2288921/94‑1 (MQ=60)

                    AAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTT                                                                          <  SRR4302536.3072341/94‑1 (MQ=60)

                    AAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTT                                                                          >  SRR4302536.1321713/1‑94 (MQ=60)

                     AGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTG                                                                         <  SRR4302536.2824387/94‑1 (MQ=60)

                     AGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTG                                                                         >  SRR4302536.3433827/1‑94 (MQ=60)

                      GATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGT                                                                        <  SRR4302536.1558662/94‑1 (MQ=60)

                      GATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGT                                                                        <  SRR4302536.5808310/94‑1 (MQ=60)

                       ATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTA                                                                       <  SRR4302536.1258006/94‑1 (MQ=60)

                        TGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAA                                                                      >  SRR4302536.3273452/1‑94 (MQ=60)

                        TGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAA                                                                      >  SRR4302536.5891556/1‑94 (MQ=60)

                        TGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAA                                                                      >  SRR4302536.834052/1‑94 (MQ=60)

                         GAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAA                                                                     >  SRR4302536.2397830/1‑94 (MQ=60)

                          AAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAAT                                                                    >  SRR4302536.3867337/1‑94 (MQ=60)

                          AAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAAT                                                                    <  SRR4302536.4828780/94‑1 (MQ=60)

                          AAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAAT                                                                    >  SRR4302536.462464/1‑94 (MQ=60)

                           AAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATC                                                                   >  SRR4302536.4321238/1‑94 (MQ=60)

                           AAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATC                                                                   >  SRR4302536.2640921/1‑94 (MQ=60)

                           AAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTAAACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAAAC                                                                   >  SRR4302536.5292570/1‑94 (MQ=60)

                             ACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTG                                                                 <  SRR4302536.1661497/94‑1 (MQ=60)

                             ACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTG                                                                 >  SRR4302536.6559212/1‑94 (MQ=60)

                              CCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGA                                                                <  SRR4302536.5290850/94‑1 (MQ=60)

                                AGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACC                                                              <  SRR4302536.1031748/94‑1 (MQ=60)

                                  TGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCC                                                            <  SRR4302536.734768/94‑1 (MQ=60)

                                  TGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCC                                                            <  SRR4302536.661726/94‑1 (MQ=60)

                                   GTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCG                                                           >  SRR4302536.419147/1‑94 (MQ=60)

                                   GTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCG                                                           <  SRR4302536.6581007/94‑1 (MQ=60)

                                     GCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGAT                                                         <  SRR4302536.92837/94‑1 (MQ=60)

                                     GCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGAT                                                         <  SRR4302536.2863107/94‑1 (MQ=60)

                                      CGCATAGGCGCTTTTGAAATCGACGATGTCGTATTACACGGCGAATCTCCAGGTAATCGAACTTTAACCATTCCTTGTAAATCTGACCCCGATT                                                        >  SRR4302536.3930588/1‑94 (MQ=60)

                                      CGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATT                                                        <  SRR4302536.4098360/94‑1 (MQ=60)

                                       GCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTT                                                       >  SRR4302536.3694052/1‑94 (MQ=60)

                                       GCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTT                                                       <  SRR4302536.5807612/94‑1 (MQ=60)

                                        CATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTA                                                      >  SRR4302536.1202894/1‑94 (MQ=60)

                                        CATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTA                                                      <  SRR4302536.5470825/94‑1 (MQ=60)

                                         ATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTAT                                                     <  SRR4302536.6247711/94‑1 (MQ=60)

                                          TAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATG                                                    <  SRR4302536.6477753/94‑1 (MQ=60)

                                           AGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGT                                                   <  SRR4302536.5636031/94‑1 (MQ=60)

                                           AGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGT                                                   >  SRR4302536.2947263/1‑94 (MQ=60)

                                            GGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTA                                                  <  SRR4302536.5811274/94‑1 (MQ=60)

                                              CGCTTTTGGAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATG                                                >  SRR4302536.6801794/1‑94 (MQ=60)

                                              CGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATG                                                >  SRR4302536.4501012/1‑94 (MQ=60)

                                              CGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATG                                                >  SRR4302536.5746427/1‑94 (MQ=60)

                                               GCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGC                                               <  SRR4302536.1919172/94‑1 (MQ=60)

                                                CTTTTGAAATCGACGACGGCGAATTATACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCA                                              >  SRR4302536.520311/1‑94 (MQ=60)

                                                   TTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACT                                           <  SRR4302536.6453106/94‑1 (MQ=60)

                                                   TTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACT                                           <  SRR4302536.6858506/94‑1 (MQ=60)

                                                    TGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTG                                          >  SRR4302536.5729143/1‑94 (MQ=60)

                                                     GAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGG                                         <  SRR4302536.3084221/94‑1 (MQ=60)

                                                     GAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCAGATTTATGTATGCAACTGG                                         >  SRR4302536.6051128/1‑94 (MQ=60)

                                                       AATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAT                                       >  SRR4302536.861964/1‑94 (MQ=60)

                                                       AATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAT                                       >  SRR4302536.5969342/1‑94 (MQ=60)

                                                       AATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAT                                       <  SRR4302536.4304472/94‑1 (MQ=60)

                                                       AATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAG                                       >  SRR4302536.4242502/1‑94 (MQ=60)

                                                        ATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATG                                      >  SRR4302536.1645638/1‑94 (MQ=60)

                                                        ATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATG                                      >  SRR4302536.2631720/1‑94 (MQ=60)

                                                         TCGACGACGACGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGC                                     >  SRR4302536.6730006/1‑94 (MQ=60)

                                                          CGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCC                                    >  SRR4302536.3029978/1‑94 (MQ=60)

                                                          CGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCC                                    <  SRR4302536.4020024/94‑1 (MQ=60)

                                                          CGACGACGGCGAATTACACGGTGAATCGCCAGGGAATTGAAGGTTGACCATTCCTTGTATATCTGtgcccgattgttttttgcgagtggatgct                                    >  SRR4302536.6515976/1‑65 (MQ=34)

                                                           GACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCT                                   >  SRR4302536.4444805/1‑94 (MQ=60)

                                                             CGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGG                                 <  SRR4302536.6392583/94‑1 (MQ=60)

                                                             CGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGG                                 <  SRR4302536.2844201/94‑1 (MQ=60)

                                                              GACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGG                                >  SRR4302536.4781841/1‑94 (MQ=60)

                                                              GACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGG                                >  SRR4302536.2277012/1‑94 (MQ=60)

                                                              GACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGG                                <  SRR4302536.5589823/94‑1 (MQ=60)

                                                               ACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGA                               <  SRR4302536.540646/94‑1 (MQ=60)

                                                                CGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAT                              <  SRR4302536.5847519/94‑1 (MQ=60)

                                                                CGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAT                              <  SRR4302536.2313065/94‑1 (MQ=60)

                                                                 GGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATG                             <  SRR4302536.4854359/94‑1 (MQ=60)

                                                                 GGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATG                             <  SRR4302536.5696409/94‑1 (MQ=60)

                                                                  GCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGC                            >  SRR4302536.144541/1‑94 (MQ=60)

                                                                   CGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCT                           >  SRR4302536.6634145/1‑94 (MQ=60)

                                                                   CGAATTACACGGTGAATCGCCAGGTAATCGAACGTGAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCT                           <  SRR4302536.1363560/94‑1 (MQ=60)

                                                                    GAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTG                          >  SRR4302536.4082979/1‑94 (MQ=60)

                                                                    GAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTG                          <  SRR4302536.4779691/94‑1 (MQ=60)

                                                                     AATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGA                         >  SRR4302536.4899641/1‑94 (MQ=60)

                                                                      ATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAA                        >  SRR4302536.1377852/1‑94 (MQ=60)

                                                                      ATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAA                        >  SRR4302536.604340/1‑94 (MQ=60)

                                                                      ATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAA                        >  SRR4302536.5408865/1‑94 (MQ=60)

                                                                       TTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAA                       <  SRR4302536.3060568/94‑1 (MQ=60)

                                                                       TTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAA                       <  SRR4302536.238228/94‑1 (MQ=60)

                                                                        TACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAAC                      >  SRR4302536.1757549/1‑94 (MQ=60)

                                                                          CACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCA                    <  SRR4302536.2895828/94‑1 (MQ=60)

                                                                          CACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCA                    >  SRR4302536.6234110/1‑94 (MQ=60)

                                                                           ACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAG                   >  SRR4302536.4502455/1‑94 (MQ=60)

                                                                            CGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGT                  >  SRR4302536.6084329/1‑94 (MQ=60)

                                                                              GTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTAT                <  SRR4302536.643743/94‑1 (MQ=60)

                                                                                GAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCC              <  SRR4302536.3589707/94‑1 (MQ=60)

                                                                                 AATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCC             <  SRR4302536.428128/94‑1 (MQ=60)

                                                                                    CGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGC          >  SRR4302536.4525599/1‑94 (MQ=60)

                                                                                      CCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCC        <  SRR4302536.4681283/94‑1 (MQ=60)

                                                                                      CCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCC        <  SRR4302536.385516/94‑1 (MQ=60)

                                                                                       CAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCT       <  SRR4302536.845938/94‑1 (MQ=60)

                                                                                        AGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTG      >  SRR4302536.5142028/1‑94 (MQ=60)

                                                                                          GTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCT    <  SRR4302536.5514368/94‑1 (MQ=60)

                                                                                          GTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCT    <  SRR4302536.3705555/94‑1 (MQ=60)

                                                                                           TAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTA   <  SRR4302536.4116467/94‑1 (MQ=60)

                                                                                           TAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTA   >  SRR4302536.1802566/1‑94 (MQ=60)

                                                                                           TAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTA   >  SRR4302536.3883158/1‑94 (MQ=60)

                                                                                            AATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  >  SRR4302536.5807967/1‑94 (MQ=60)

                                                                                            AATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  >  SRR4302536.3776807/1‑94 (MQ=60)

                                                                                            AATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  <  SRR4302536.5608837/94‑1 (MQ=60)

GCAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  >  NC_000913/1919781‑1919966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`