Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,923,118 T→C intergenic (‑125/‑14) b1841 ← / → holE hypothetical protein/DNA polymerase III theta subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,923,1180TC100.0% 802.1 / NA 242intergenic (‑125/‑14)b1841/holEhypothetical protein/DNA polymerase III theta subunit
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (103/139);  total (103/139)

Only 100 of 253 total aligned reads displayed.

GAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGG  >  NC_000913/1923028‑1923207
                                                                                          |                                                                                         
 agCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgag                                                                                        <  1:1084268/93‑1 (MQ=255)
 agCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgag                                                                                        <  1:5237415/93‑1 (MQ=255)
 agCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgag                                                                                        <  1:2410605/93‑1 (MQ=255)
  gCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgagg                                                                                       >  2:3272233/1‑93 (MQ=255)
    aTAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgaggag                                                                                     >  2:537636/1‑93 (MQ=255)
    aTAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgaggag                                                                                     >  1:2793656/1‑93 (MQ=255)
     tAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGgaga                                                                                    >  2:4765867/1‑93 (MQ=255)
      aaCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTATTAACTTTTGCCCGCGAATGACGAGGAGAt                                                                                   <  1:5305573/93‑1 (MQ=255)
      aaCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAt                                                                                   <  1:3919713/93‑1 (MQ=255)
      aaCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAt                                                                                   <  2:3092562/93‑1 (MQ=255)
      aaCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAt                                                                                   <  2:3536695/93‑1 (MQ=255)
       aCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAtt                                                                                  >  2:6500360/1‑93 (MQ=255)
       aCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAtt                                                                                  >  2:1068233/1‑93 (MQ=255)
         cgtGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTaa                                                                                <  1:6032849/91‑1 (MQ=255)
         cTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTaa                                                                                >  1:5887818/1‑93 (MQ=255)
          ttGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAg                                                                               >  2:2100601/1‑93 (MQ=255)
           tGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGa                                                                              >  1:3329437/1‑93 (MQ=255)
           tGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGa                                                                              <  1:786755/93‑1 (MQ=255)
            gTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGaa                                                                             <  2:4025114/93‑1 (MQ=255)
            gTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGaa                                                                             <  2:1759307/93‑1 (MQ=255)
             tCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAt                                                                            <  1:1315302/93‑1 (MQ=255)
             tCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAt                                                                            >  1:3586880/1‑93 (MQ=255)
             tCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAt                                                                            <  1:205115/93‑1 (MQ=255)
             tCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAt                                                                            <  1:1593352/93‑1 (MQ=255)
               tAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGc                                                                          >  1:3077445/1‑93 (MQ=255)
               tAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGc                                                                          >  2:4183281/1‑93 (MQ=255)
               tAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGc                                                                          >  2:818674/1‑93 (MQ=255)
               tAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGc                                                                          <  2:4875836/93‑1 (MQ=255)
                aaTGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCt                                                                         >  1:4439085/1‑93 (MQ=255)
                 aTGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTg                                                                        <  1:5410330/93‑1 (MQ=255)
                 aTGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTg                                                                        >  1:910304/1‑93 (MQ=255)
                    tCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTgaag                                                                     <  1:3972137/93‑1 (MQ=255)
                     cTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTgaaga                                                                    <  2:375022/93‑1 (MQ=255)
                      tGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTgaagaa                                                                   <  2:1460778/93‑1 (MQ=255)
                      tGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTgaagaa                                                                   >  1:2962499/1‑93 (MQ=255)
                      tGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTgaagaa                                                                   >  2:1132677/1‑93 (MQ=255)
                        ggTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATc                                                                 <  2:2039957/92‑1 (MQ=255)
                        aGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATc                                                                 <  2:5171186/93‑1 (MQ=255)
                         gTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGCATGCTGAAGAATCt                                                                >  2:3632847/1‑93 (MQ=255)
                         gTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCt                                                                <  1:2740281/93‑1 (MQ=255)
                           cGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTgg                                                              >  2:5495674/1‑93 (MQ=255)
                           cGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTgg                                                              >  2:4645184/1‑93 (MQ=255)
                            gAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGc                                                             <  1:2566542/93‑1 (MQ=255)
                              ggATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTa                                                           <  2:1261129/93‑1 (MQ=255)
                              ggATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGATa                                                           >  1:4676037/1‑93 (MQ=255)
                                atcatcAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTaaa                                                         >  2:1997978/1‑93 (MQ=255)
                                 tcatcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAc                                                        >  2:1581674/1‑93 (MQ=255)
                                 tcatcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAc                                                        >  2:139253/1‑93 (MQ=255)
                                 tcatcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAc                                                        >  1:5123173/1‑93 (MQ=255)
                                 tcatcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAc                                                        <  2:6160187/93‑1 (MQ=255)
                                 tcatcaATCACGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAc                                                        <  1:4225497/93‑1 (MQ=255)
                                  catcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACt                                                       <  1:1565187/93‑1 (MQ=255)
                                  catcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACt                                                       <  2:722922/93‑1 (MQ=255)
                                     caATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGa                                                    <  2:3682145/93‑1 (MQ=255)
                                       aTTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATc                                                  >  2:233643/1‑93 (MQ=255)
                                       aTTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATc                                                  <  2:4392442/93‑1 (MQ=255)
                                       aTTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATc                                                  >  2:897761/1‑93 (MQ=255)
                                            ggCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACa                                             >  1:2672692/1‑93 (MQ=255)
                                               ttGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGaa                                          >  1:4146139/1‑93 (MQ=255)
                                                 tccATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAAt                                        <  1:5937592/92‑1 (MQ=255)
                                                   cATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATgg                                      >  1:569153/1‑93 (MQ=255)
                                                   cATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATgg                                      >  1:185088/1‑93 (MQ=255)
                                                    aTCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGa                                     <  2:5026962/93‑1 (MQ=255)
                                                     tCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGAt                                    <  1:3711296/93‑1 (MQ=255)
                                                       cTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaa                                  <  1:4088796/93‑1 (MQ=255)
                                                       cTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaa                                  >  2:1703146/1‑93 (MQ=255)
                                                       cTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaa                                  >  1:2141755/1‑93 (MQ=255)
                                                        tGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa                                 >  2:6330701/1‑93 (MQ=255)
                                                          gCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGt                               <  1:1255575/93‑1 (MQ=255)
                                                             cACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGaa                            <  2:4947507/93‑1 (MQ=255)
                                                             cACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGaa                            <  1:1039238/93‑1 (MQ=255)
                                                              aCTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATTTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAt                           <  2:3864614/93‑1 (MQ=255)
                                                              aCTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAt                           <  2:6087562/93‑1 (MQ=255)
                                                              aCTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAt                           <  1:5687310/93‑1 (MQ=255)
                                                                tctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGt                         <  2:1325784/93‑1 (MQ=255)
                                                                tctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGt                         >  2:2169711/1‑93 (MQ=255)
                                                                tctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGt                         <  2:2577352/93‑1 (MQ=255)
                                                                 ctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTc                        >  1:2858761/1‑93 (MQ=255)
                                                                  ttAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCg                       >  2:5782981/1‑93 (MQ=255)
                                                                  ttAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCg                       >  1:5805501/1‑93 (MQ=255)
                                                                   tAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGa                      >  1:5024832/1‑93 (MQ=255)
                                                                    aGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGAt                     <  1:629008/93‑1 (MQ=255)
                                                                     gTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGAtt                    <  2:2635629/93‑1 (MQ=255)
                                                                     gTAACTGTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGAATCAAACAGAAATGGATAAAGTGAATGTCGAtt                    <  2:3488430/93‑1 (MQ=255)
                                                                      tAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGAttt                   >  2:5707249/1‑93 (MQ=255)
                                                                       aaCTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTg                  >  1:6373630/1‑93 (MQ=255)
                                                                        aCTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTgg                 >  2:1506892/1‑93 (MQ=255)
                                                                        aCTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTgg                 >  1:5780649/1‑93 (MQ=255)
                                                                        aCTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTgg                 >  1:6249750/1‑93 (MQ=255)
                                                                          ttttGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTggcg               >  1:608724/1‑93 (MQ=255)
                                                                                ccGCGAACGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGcc         >  1:728827/1‑93 (MQ=255)
                                                                                  gcgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCgg       >  2:5537654/1‑93 (MQ=255)
                                                                                  gcgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCgg       <  1:3258728/93‑1 (MQ=255)
                                                                                  gcgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCgg       <  2:2796664/93‑1 (MQ=255)
                                                                                   cgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCggg      <  2:1701660/93‑1 (MQ=255)
                                                                                   cgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCggg      <  1:4801576/93‑1 (MQ=255)
                                                                                    gAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCgggg     <  2:1821891/93‑1 (MQ=255)
                                                                                     aaTGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGt    >  1:3016181/1‑93 (MQ=255)
                                                                                     aaTGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGt    <  1:6635392/93‑1 (MQ=255)
                                                                                       tgacgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTgg  <  1:196847/93‑1 (MQ=255)
                                                                                          |                                                                                         
GAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGG  >  NC_000913/1923028‑1923207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGGCATT  >  NC_000913/1923025‑1923211
                                                                                             |                                                                                             
ACAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGAC                                                                                               <  SRR4302536.5508583/94‑1 (MQ=60)
ACAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGAC                                                                                               >  SRR4302536.2348648/1‑94 (MQ=60)
ACAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGAC                                                                                               <  SRR4302536.6598323/94‑1 (MQ=60)
ACAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGAC                                                                                               <  SRR4302536.972396/94‑1 (MQ=60)
ACAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGAC                                                                                               <  SRR4302536.5045200/94‑1 (MQ=60)
ACAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGAC                                                                                               <  SRR4302536.3577255/94‑1 (MQ=60)
 CAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACG                                                                                              >  SRR4302536.617193/1‑94 (MQ=60)
  AGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGA                                                                                             <  SRR4302536.5955915/94‑1 (MQ=60)
   GAGCATAACGTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAG                                                                                            <  SRR4302536.6177203/94‑1 (MQ=60)
   GAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAG                                                                                            >  SRR4302536.5437386/1‑94 (MQ=60)
   GAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAG                                                                                            <  SRR4302536.201987/94‑1 (MQ=60)
    AGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGG                                                                                           <  SRR4302536.2483522/94‑1 (MQ=60)
    AGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGG                                                                                           <  SRR4302536.5393453/94‑1 (MQ=60)
    AGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGG                                                                                           >  SRR4302536.1271291/1‑94 (MQ=60)
    AGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGG                                                                                           <  SRR4302536.1116743/94‑1 (MQ=60)
      CATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAG                                                                                         >  SRR4302536.2876558/1‑94 (MQ=60)
        TAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAT                                                                                       >  SRR4302536.5291779/1‑94 (MQ=60)
         AACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTATTAACTTTTGCCCGCGAATGACGAGGAGATT                                                                                      <  SRR4302536.5463894/94‑1 (MQ=60)
         AACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATT                                                                                      <  SRR4302536.4036225/94‑1 (MQ=60)
         AACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATT                                                                                      <  SRR4302536.340111/94‑1 (MQ=60)
          ACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTA                                                                                     <  SRR4302536.580411/94‑1 (MQ=60)
          ACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTA                                                                                     <  SRR4302536.3619666/94‑1 (MQ=60)
          ACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCACGCGAATGACGAGGAGATTA                                                                                     >  SRR4302536.6472015/1‑94 (MQ=60)
           CCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAA                                                                                    >  SRR4302536.6063174/1‑94 (MQ=60)
           CCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAA                                                                                    >  SRR4302536.281895/1‑94 (MQ=60)
           CCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAA                                                                                    <  SRR4302536.5443038/94‑1 (MQ=60)
            CTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAG                                                                                   <  SRR4302536.6494942/94‑1 (MQ=60)
            CTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAG                                                                                   >  SRR4302536.280572/1‑94 (MQ=60)
            CGTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAG                                                                                   <  SRR4302536.6212742/94‑1 (MQ=60)
             TTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGA                                                                                  >  SRR4302536.3427968/1‑94 (MQ=60)
              TGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAA                                                                                 <  SRR4302536.809792/94‑1 (MQ=60)
               GTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAT                                                                                <  SRR4302536.1120117/94‑1 (MQ=60)
               GTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAT                                                                                >  SRR4302536.3694168/1‑94 (MQ=60)
               GTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAT                                                                                <  SRR4302536.5984816/94‑1 (MQ=60)
                TCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATG                                                                               <  SRR4302536.210517/94‑1 (MQ=60)
                TCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATG                                                                               <  SRR4302536.1354573/94‑1 (MQ=60)
                TCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATG                                                                               <  SRR4302536.1639925/94‑1 (MQ=60)
                 CTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGC                                                                              >  SRR4302536.3167552/1‑94 (MQ=60)
                  TAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCT                                                                             >  SRR4302536.4572326/1‑94 (MQ=60)
                  TAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCT                                                                             <  SRR4302536.1107413/94‑1 (MQ=60)
                  TAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCT                                                                             <  SRR4302536.875280/94‑1 (MQ=60)
                   AATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTG                                                                            >  SRR4302536.937132/1‑94 (MQ=60)
                   AATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTG                                                                            >  SRR4302536.2475509/1‑94 (MQ=60)
                    ATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGA                                                                           <  SRR4302536.5571994/94‑1 (MQ=60)
                    ATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGA                                                                           <  SRR4302536.5187148/94‑1 (MQ=60)
                     TGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAA                                                                          >  SRR4302536.5000024/1‑94 (MQ=60)
                       TCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGA                                                                        <  SRR4302536.4090037/94‑1 (MQ=60)
                        CTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAA                                                                       >  SRR4302536.3049762/1‑94 (MQ=60)
                        CTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAA                                                                       >  SRR4302536.2032822/1‑94 (MQ=60)
                           AGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCT                                                                    <  SRR4302536.454530/94‑1 (MQ=60)
                            GTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTG                                                                   <  SRR4302536.2821922/94‑1 (MQ=60)
                              CGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGC                                                                 <  SRR4302536.1732217/94‑1 (MQ=60)
                               GAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGACTCTGGCT                                                                >  SRR4302536.5621011/1‑94 (MQ=60)
                               GAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCT                                                                <  SRR4302536.2643750/94‑1 (MQ=60)
                               GAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCT                                                                >  SRR4302536.872880/1‑94 (MQ=60)
                                AGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTA                                                               <  SRR4302536.4077997/94‑1 (MQ=60)
                                AGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTA                                                               <  SRR4302536.1613345/94‑1 (MQ=60)
                                AGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGATA                                                               >  SRR4302536.4816660/1‑94 (MQ=60)
                                 GGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAA                                                              <  SRR4302536.2086827/94‑1 (MQ=60)
                                  GATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAA                                                             >  SRR4302536.6571169/1‑94 (MQ=60)
                                   ATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAC                                                            <  SRR4302536.13613/94‑1 (MQ=60)
                                   ATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAC                                                            >  SRR4302536.5276244/1‑94 (MQ=60)
                                   ATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAC                                                            >  SRR4302536.4147784/1‑94 (MQ=60)
                                    TCATCAATCACGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACT                                                           <  SRR4302536.4351227/94‑1 (MQ=60)
                                     CATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTG                                                          <  SRR4302536.1611131/94‑1 (MQ=60)
                                      ATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGG                                                         <  SRR4302536.789876/94‑1 (MQ=60)
                                      ATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGG                                                         >  SRR4302536.6286121/1‑94 (MQ=60)
                                       TCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGA                                                        <  SRR4302536.726507/94‑1 (MQ=60)
                                        CAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGAT                                                       <  SRR4302536.1361312/94‑1 (MQ=60)
                                        CAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGAT                                                       <  SRR4302536.4339335/94‑1 (MQ=60)
                                        CAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGAT                                                       <  SRR4302536.4019498/94‑1 (MQ=60)
                                         AATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTCGCTAAACTGGATC                                                      >  SRR4302536.3089125/1‑94 (MQ=60)
                                          ATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCA                                                     <  SRR4302536.4603352/94‑1 (MQ=60)
                                           TTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGCGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAA                                                    >  SRR4302536.6002332/1‑94 (MQ=60)
                                              CGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACA                                                 <  SRR4302536.2827879/94‑1 (MQ=60)
                                              CGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACA                                                 >  SRR4302536.2752597/1‑94 (MQ=60)
                                                 CTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAA                                              >  SRR4302536.4269145/1‑94 (MQ=60)
                                                   TGCCATTCTTGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAAT                                            <  SRR4302536.2141530/94‑1 (MQ=60)
                                                   TACCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAAT                                            >  SRR4302536.3094632/1‑94 (MQ=60)
                                                    TCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATG                                           <  SRR4302536.6114467/94‑1 (MQ=60)
                                                    GCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATG                                           <  SRR4302536.5898963/94‑1 (MQ=60)
                                                     CCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGG                                          >  SRR4302536.4974494/1‑94 (MQ=60)
                                                     CCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGG                                          >  SRR4302536.583638/1‑94 (MQ=60)
                                                     CCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGG                                          <  SRR4302536.6295656/94‑1 (MQ=60)
                                                     CCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGG                                          >  SRR4302536.189971/1‑94 (MQ=60)
                                                     CCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGG                                          <  SRR4302536.4764735/94‑1 (MQ=60)
                                                       CTCCTGGCTCACGCTTAGTAACTTGTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGAT                                        <  SRR4302536.3198679/94‑1 (MQ=60)
                                                       ATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACTGAAATGGAT                                        >  SRR4302536.5510778/1‑94 (MQ=60)
                                                       ATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGAT                                        >  SRR4302536.2886478/1‑94 (MQ=60)
                                                        TCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATA                                       <  SRR4302536.4160181/94‑1 (MQ=60)
                                                        TCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATA                                       <  SRR4302536.3822249/94‑1 (MQ=60)
                                                         CCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAA                                      >  SRR4302536.2206044/1‑94 (MQ=60)
                                                          CTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAA                                     <  SRR4302536.6106262/94‑1 (MQ=60)
                                                          CTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAA                                     <  SRR4302536.4210014/94‑1 (MQ=60)
                                                           TGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAG                                    <  SRR4302536.4287908/94‑1 (MQ=60)
                                                             GCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTG                                  <  SRR4302536.1293257/94‑1 (MQ=60)
                                                               TCACTCTTAGTAACGTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAGTGGATCAAACAGAAATGGATAAAGTGAA                                <  SRR4302536.3127111/94‑1 (MQ=60)
                                                                CACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAT                               <  SRR4302536.1070093/94‑1 (MQ=60)
                                                                CACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAT                               <  SRR4302536.738106/94‑1 (MQ=60)
                                                                 ACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATG                              <  SRR4302536.5856428/94‑1 (MQ=60)
                                                                  CTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGCTTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGT                             >  SRR4302536.3453234/1‑94 (MQ=60)
                                                                   TCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTC                            >  SRR4302536.2943264/1‑94 (MQ=60)
                                                                   TCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTC                            <  SRR4302536.5363863/94‑1 (MQ=60)
                                                                    CTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCG                           >  SRR4302536.5978402/1‑94 (MQ=60)
                                                                    CTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCG                           >  SRR4302536.64789/1‑94 (MQ=60)
                                                                    CTAAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCG                           <  SRR4302536.4830646/94‑1 (MQ=60)
                                                                     TTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGA                          >  SRR4302536.5175454/1‑94 (MQ=60)
                                                                       AGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATT                        <  SRR4302536.5857098/94‑1 (MQ=60)
                                                                       AGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATT                        <  SRR4302536.1844207/94‑1 (MQ=60)
                                                                       AGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATT                        <  SRR4302536.647648/94‑1 (MQ=60)
                                                                       AGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATT                        <  SRR4302536.1319309/94‑1 (MQ=60)
                                                                        GTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTT                       <  SRR4302536.3827276/94‑1 (MQ=60)
                                                                         TAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTG                      >  SRR4302536.6563575/1‑94 (MQ=60)
                                                                         TAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTG                      <  SRR4302536.982434/94‑1 (MQ=60)
                                                                         TAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTG                      <  SRR4302536.2626979/94‑1 (MQ=60)
                                                                          AACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGG                     <  SRR4302536.6231136/94‑1 (MQ=60)
                                                                          AACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGG                     >  SRR4302536.6435937/1‑94 (MQ=60)
                                                                          AACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGG                     <  SRR4302536.2994511/94‑1 (MQ=60)
                                                                          AACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGG                     >  SRR4302536.3049701/1‑94 (MQ=60)
                                                                          AACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGG                     >  SRR4302536.5952691/1‑94 (MQ=60)
                                                                            CTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCG                   >  SRR4302536.626911/1‑94 (MQ=60)
                                                                              TTTGCCTGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGC                 <  SRR4302536.2714295/94‑1 (MQ=60)
                                                                               TTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCG                <  SRR4302536.6168352/94‑1 (MQ=60)
                                                                               TTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCG                <  SRR4302536.3271351/94‑1 (MQ=60)
                                                                                  CCCGCGAACGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCC             >  SRR4302536.750179/1‑94 (MQ=60)
                                                                                     GCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGG          <  SRR4302536.2259390/94‑1 (MQ=60)
                                                                                     GCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGG          <  SRR4302536.3354256/94‑1 (MQ=60)
                                                                                     GCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGG          <  SRR4302536.2649431/94‑1 (MQ=60)
                                                                                      CGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGG         <  SRR4302536.4946088/94‑1 (MQ=60)
                                                                                       GAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGT        >  SRR4302536.3104829/1‑94 (MQ=60)
                                                                                       GAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGG        >  SRR4302536.5878868/1‑94 (MQ=60)
                                                                                        AATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCTATTTGGCGGCGGCCGGGGTG       <  SRR4302536.5957883/94‑1 (MQ=60)
                                                                                        AATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTG       >  SRR4302536.998470/1‑94 (MQ=60)
                                                                                        AATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTG       <  SRR4302536.6832735/94‑1 (MQ=60)
                                                                                        AATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTG       >  SRR4302536.3695509/1‑94 (MQ=60)
                                                                                         ATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGG      <  SRR4302536.4250562/94‑1 (MQ=60)
                                                                                          TGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGGC     <  SRR4302536.202021/94‑1 (MQ=60)
                                                                                            ACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGGGAT   >  SRR4302536.5577762/1‑94 (MQ=60)
                                                                                            ACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGGCAT   <  SRR4302536.5617344/94‑1 (MQ=60)
                                                                                             CGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGGCATT  <  SRR4302536.5507020/94‑1 (MQ=60)
                                                                                             |                                                                                             
ACAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGGCATT  >  NC_000913/1923025‑1923211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑