Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1475 |
266.7 |
13469680 |
98.2% |
13227225 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,972,288 |
G→A |
T354M (ACG→ATG) |
cheA ← |
CheA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,972,288 | 0 | G | A | 100.0%
| 846.8
/ NA
| 227 | T354M (ACG→ATG) | cheA | CheA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (120/107); total (120/107) |
Only 100 of 230 total aligned reads displayed.
TGATCGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCGTCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATGCGA > NC_000913/1972198‑1972377
|
tGATCGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATc < 2:5410569/93‑1 (MQ=255)
aTCGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAg > 2:2349933/1‑93 (MQ=255)
cGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGtt > 2:2051867/1‑93 (MQ=255)
cGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGtt > 2:5970387/1‑93 (MQ=255)
gAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTc > 1:4996874/1‑93 (MQ=255)
gAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTc < 2:2718079/93‑1 (MQ=255)
gAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTc < 1:783172/93‑1 (MQ=255)
gAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTc > 1:2564943/1‑93 (MQ=255)
gAGGATATGGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAGCTGCCCACCAGCATCAGTTc < 1:3954963/93‑1 (MQ=255)
ggCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTa > 1:304110/1‑93 (MQ=255)
cTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTAcc < 1:1328272/93‑1 (MQ=255)
tATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCt > 2:1810687/1‑93 (MQ=255)
tATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCt > 2:1440296/1‑93 (MQ=255)
ttGCGTACTAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTTAGTAGAACTGCCCACCAGCATCAGTTCTACCTGc < 2:2085139/93‑1 (MQ=255)
ttGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGc < 2:5880418/93‑1 (MQ=255)
ttGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGc < 1:577519/93‑1 (MQ=255)
tACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGcc > 2:1958945/1‑93 (MQ=255)
aCCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCg < 1:2459284/93‑1 (MQ=255)
ccAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGa > 2:3555628/1‑93 (MQ=255)
aGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGt > 2:1658847/1‑93 (MQ=255)
ggTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGtt < 1:3171439/93‑1 (MQ=255)
ggTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGtt > 2:4357963/1‑93 (MQ=255)
gTGGGTCAGCGGGGCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGttt > 1:5887798/1‑93 (MQ=255)
tGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGtttt > 2:404034/1‑93 (MQ=255)
ggTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTcc < 2:2414838/93‑1 (MQ=255)
ggTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTcc < 2:3458021/93‑1 (MQ=255)
ggTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTcc < 1:4674255/93‑1 (MQ=255)
gTCAGCGGGTCGATAATGCTTTCTAACAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTccc < 1:5750006/93‑1 (MQ=255)
gCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCa < 1:3769817/93‑1 (MQ=255)
gggTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGa < 1:807322/93‑1 (MQ=255)
ggTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGAt > 2:6555283/1‑93 (MQ=255)
ggTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGAt < 1:3622158/93‑1 (MQ=255)
gTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATc > 1:1368737/1‑93 (MQ=255)
gTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATc > 1:5305486/1‑93 (MQ=255)
gTCCATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATc < 1:1725026/93‑1 (MQ=255)
tCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCa < 1:5479924/93‑1 (MQ=255)
tCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCa > 2:6226996/1‑93 (MQ=255)
gcGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCa < 2:1547555/92‑1 (MQ=255)
cGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCAc > 2:325989/1‑93 (MQ=255)
cGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCAc < 2:1784471/93‑1 (MQ=255)
cGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCAc > 1:1001263/1‑93 (MQ=255)
tAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCa > 2:5555484/1‑93 (MQ=255)
aTGCGTTCTATCAGTCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCAcc < 1:1134597/93‑1 (MQ=255)
aTGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCAcc > 1:3654846/1‑93 (MQ=255)
aTGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCAcc < 1:4830827/93‑1 (MQ=255)
tGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCa > 1:6625385/1‑93 (MQ=255)
gCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAg > 1:5670924/1‑93 (MQ=255)
ttCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCg > 1:5998038/1‑93 (MQ=255)
ttCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCg > 1:3563530/1‑93 (MQ=255)
ttCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCg > 1:4899876/1‑93 (MQ=255)
cTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCggg < 2:2188106/93‑1 (MQ=255)
aTCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGa < 1:2406275/93‑1 (MQ=255)
aTCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGa < 1:5253545/93‑1 (MQ=255)
tCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGAt > 2:3678442/1‑93 (MQ=255)
tCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGAt < 1:1791739/93‑1 (MQ=255)
cAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATa > 2:5318304/1‑93 (MQ=255)
aGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAg < 2:4993567/93‑1 (MQ=255)
aGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAg < 2:3726190/93‑1 (MQ=255)
ggCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGc < 2:1328488/93‑1 (MQ=255)
cTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGa < 2:1065318/93‑1 (MQ=255)
ttGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTa > 2:6122634/1‑93 (MQ=255)
ttGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTa < 2:4558666/93‑1 (MQ=255)
tGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTaa > 1:6181640/1‑93 (MQ=255)
tGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTaa < 2:766360/93‑1 (MQ=255)
tGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTaa < 2:3177563/93‑1 (MQ=255)
aGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACa < 2:3053553/93‑1 (MQ=255)
aGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACa < 2:508274/93‑1 (MQ=255)
aGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACa > 2:628777/1‑93 (MQ=255)
gTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACat > 1:4084024/1‑93 (MQ=255)
gTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACat > 1:2928555/1‑93 (MQ=255)
gTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACat < 1:333162/93‑1 (MQ=255)
gTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACat > 1:1605116/1‑93 (MQ=255)
gTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACat < 1:4199302/93‑1 (MQ=255)
ttCAGTAGAACTGCCCACCAGCATCAGTTCTCCCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACata < 2:73107/93‑1 (MQ=255)
tCAGTAGAACTTCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACatat < 1:5067997/93‑1 (MQ=255)
tCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGTGATAGCGACTAAAAACatat > 2:493477/1‑93 (MQ=255)
cAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATAtt > 1:248643/1‑93 (MQ=255)
cAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATAtt < 2:3142351/93‑1 (MQ=255)
cAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATAtt > 1:6156378/1‑93 (MQ=255)
aGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTc > 1:2173753/1‑93 (MQ=255)
aGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTc > 2:3828255/1‑93 (MQ=255)
gTAGAACTGCCCACCAGCATCTGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTcc > 1:2111684/1‑93 (MQ=255)
gTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTcc < 2:4842261/93‑1 (MQ=255)
gAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATc > 2:2470871/1‑93 (MQ=255)
gAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATc < 2:4234882/93‑1 (MQ=255)
gAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATc < 2:3204650/93‑1 (MQ=255)
aaCTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCg < 2:3296252/93‑1 (MQ=255)
aCTGCCCGCCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCgg < 2:637649/93‑1 (MQ=255)
aCTGCCCGCCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCgg < 1:4529481/93‑1 (MQ=255)
tGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGca < 2:940514/93‑1 (MQ=255)
gCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGcat > 1:4391009/1‑93 (MQ=255)
cccACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGcatc < 2:5789628/93‑1 (MQ=255)
cccACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGcatc > 1:5601374/1‑93 (MQ=255)
cccACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGcatc > 2:6587713/1‑93 (MQ=255)
ccaccaGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGcatca > 1:1981493/1‑93 (MQ=255)
caccaGCATCATTCCTACCCGCGCGCCGAGGTTCCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGcatcat < 2:5227019/93‑1 (MQ=255)
caccaGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAACCATATTCCATCGGcatcat > 1:4655520/1‑93 (MQ=255)
caccaGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGcatcat > 1:3429696/1‑93 (MQ=255)
caccaGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGcatcat < 1:4739298/93‑1 (MQ=255)
aGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATGCGa > 2:4483706/1‑93 (MQ=255)
|
TGATCGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCGTCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATGCGA > NC_000913/1972198‑1972377
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGATCGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCGTCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATGCGAATCG > NC_000913/1972198‑1972381
|
TGATCGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCA > SRR4302536.4363420/1‑94 (MQ=60)
GATCGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAG > SRR4302536.4579684/1‑94 (MQ=60)
CGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTC > SRR4302536.1174522/1‑94 (MQ=60)
CGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTC > SRR4302536.2642111/1‑94 (MQ=60)
CGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTC > SRR4302536.5146834/1‑94 (MQ=60)
GAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCT < SRR4302536.2964772/94‑1 (MQ=60)
GAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCT > SRR4302536.1618456/1‑94 (MQ=60)
GAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCT > SRR4302536.6517713/1‑94 (MQ=60)
GAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCT < SRR4302536.4857446/94‑1 (MQ=60)
GAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCT < SRR4302536.806104/94‑1 (MQ=60)
GAGGATATGGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAGCTGCCCACCAGCATCAGTTCT < SRR4302536.4072403/94‑1 (MQ=60)
AGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTA > SRR4302536.312190/1‑94 (MQ=60)
AGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTA > SRR4302536.2630238/1‑94 (MQ=60)
GGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTAC > SRR4302536.3565289/1‑94 (MQ=60)
CTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCT < SRR4302536.3697452/94‑1 (MQ=60)
CTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCT < SRR4302536.1367915/94‑1 (MQ=60)
CTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCT > SRR4302536.5265011/1‑94 (MQ=60)
TATTGCGGACCAGGTGGGTCAGCGGGTCGATAATGCGGTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCACCATCAGTTCTACGTG > SRR4302536.2803625/1‑94 (MQ=60)
TTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCT < SRR4302536.592181/94‑1 (MQ=60)
TGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTT < SRR4302536.1377535/94‑1 (MQ=60)
GCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTG < SRR4302536.6284509/94‑1 (MQ=60)
GCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTG < SRR4302536.2517291/94‑1 (MQ=60)
ACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGA < SRR4302536.2533539/94‑1 (MQ=60)
CCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAG < SRR4302536.4848668/94‑1 (MQ=60)
CAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGT > SRR4302536.5105216/1‑94 (MQ=60)
AGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTT > SRR4302536.3084015/1‑94 (MQ=60)
AGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGGT > SRR4302536.778657/1‑94 (MQ=60)
GGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTT < SRR4302536.3264357/94‑1 (MQ=60)
GGTGGGTCAGCGGGGCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTT > SRR4302536.6063154/1‑94 (MQ=60)
GTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTT < SRR4302536.814872/94‑1 (MQ=60)
GGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCC < SRR4302536.4687074/94‑1 (MQ=60)
GGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCC < SRR4302536.4091264/94‑1 (MQ=60)
GGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCC < SRR4302536.4814817/94‑1 (MQ=60)
GTCAGCGGGTCGATAATGCTTTCTAACAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCG < SRR4302536.5921040/94‑1 (MQ=60)
TCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGC > SRR4302536.5486675/1‑94 (MQ=60)
GCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAG < SRR4302536.3882363/94‑1 (MQ=60)
GGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGAT < SRR4302536.830994/94‑1 (MQ=60)
GGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATC > SRR4302536.1409532/1‑94 (MQ=60)
GGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATC < SRR4302536.3730462/94‑1 (MQ=60)
GGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATC > SRR4302536.5463803/1‑94 (MQ=60)
GGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATC > SRR4302536.5770293/1‑94 (MQ=60)
GTCCATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCA < SRR4302536.1774847/94‑1 (MQ=60)
TCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCAC > SRR4302536.1030803/1‑94 (MQ=60)
TCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCAC < SRR4302536.5643560/94‑1 (MQ=60)
TCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCAC < SRR4302536.6160971/94‑1 (MQ=60)
TCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCAC < SRR4302536.2535137/94‑1 (MQ=60)
ATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCA > SRR4302536.3688724/1‑94 (MQ=60)
TAATGCGTTCTCTCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCCC > SRR4302536.5164856/1‑94 (MQ=60)
AATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACC > SRR4302536.3764108/1‑94 (MQ=60)
ATGCGTTCTATCAGTCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCA < SRR4302536.1168707/94‑1 (MQ=60)
ATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCA < SRR4302536.6182197/94‑1 (MQ=60)
ATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCA < SRR4302536.4976196/94‑1 (MQ=60)
ATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCA > SRR4302536.6822448/1‑94 (MQ=60)
TGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAG > SRR4302536.5839493/1‑94 (MQ=60)
GCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGC > SRR4302536.6034764/1‑94 (MQ=60)
CGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCC > SRR4302536.3776183/1‑94 (MQ=60)
CGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCC > SRR4302536.202244/1‑94 (MQ=60)
GTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCG > SRR4302536.3670078/1‑94 (MQ=60)
GTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCG < SRR4302536.5521548/94‑1 (MQ=60)
GTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCG > SRR4302536.5047225/1‑94 (MQ=60)
GTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCG > SRR4302536.4978140/1‑94 (MQ=60)
GTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCG > SRR4302536.6176841/1‑94 (MQ=60)
ATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGAT < SRR4302536.2479070/94‑1 (MQ=60)
ATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGAT < SRR4302536.5410080/94‑1 (MQ=60)
ATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGAT < SRR4302536.568383/94‑1 (MQ=60)
ATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGAT > SRR4302536.3166772/1‑94 (MQ=60)
TCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATA < SRR4302536.1845853/94‑1 (MQ=60)
CAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAG > SRR4302536.2262286/1‑94 (MQ=60)
CAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAG > SRR4302536.2066846/1‑94 (MQ=60)
AGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGC < SRR4302536.3974681/94‑1 (MQ=60)
GGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCG < SRR4302536.3491921/94‑1 (MQ=60)
GCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGCTTTCCCGCCAGATCAACAACCAGCCGGGGCAAGCGA > SRR4302536.5194294/1‑94 (MQ=60)
CTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGAC > SRR4302536.6848020/1‑94 (MQ=60)
TTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACT < SRR4302536.5876688/94‑1 (MQ=60)
TTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACT < SRR4302536.6341581/94‑1 (MQ=60)
TTTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGACGCGGATAGCGACT > SRR4302536.4926127/1‑94 (MQ=60)
TTTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTA < SRR4302536.1166245/94‑1 (MQ=60)
TTGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAA > SRR4302536.6365748/1‑94 (MQ=60)
TGTCGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAA < SRR4302536.4798733/94‑1 (MQ=60)
CGAGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAAC < SRR4302536.2203089/94‑1 (MQ=60)
AGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACAT > SRR4302536.4205094/1‑94 (MQ=60)
AGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACAT > SRR4302536.3014977/1‑94 (MQ=60)
AGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACAT > SRR4302536.1651954/1‑94 (MQ=60)
AGTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACAT < SRR4302536.1452209/94‑1 (MQ=60)
GTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATA < SRR4302536.4324127/94‑1 (MQ=60)
GTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATA < SRR4302536.1716656/94‑1 (MQ=60)
GTTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATA < SRR4302536.342006/94‑1 (MQ=60)
TTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATAT < SRR4302536.1883767/94‑1 (MQ=60)
TTCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATAT < SRR4302536.4293412/94‑1 (MQ=60)
TCAGTAGAACTTCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATT < SRR4302536.5219750/94‑1 (MQ=60)
TCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATT > SRR4302536.255283/1‑94 (MQ=60)
TCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATT > SRR4302536.6339783/1‑94 (MQ=60)
TCAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATT > SRR4302536.5923451/1‑94 (MQ=60)
TAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTC < SRR4302536.980240/94‑1 (MQ=60)
CAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTC > SRR4302536.2239220/1‑94 (MQ=60)
CAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTC > SRR4302536.5845228/1‑94 (MQ=60)
CAGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTC < SRR4302536.4623567/94‑1 (MQ=60)
AGTAGAACTGCCCACCAGCATCTGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCC > SRR4302536.2175147/1‑94 (MQ=60)
AGTAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCC > SRR4302536.3751137/1‑94 (MQ=60)
TAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCAT < SRR4302536.1789012/94‑1 (MQ=60)
TAGAACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCAT < SRR4302536.4143453/94‑1 (MQ=60)
AACTGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGG > SRR4302536.329381/1‑94 (MQ=60)
ACTGCCCGCCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGC < SRR4302536.4665272/94‑1 (MQ=60)
TGCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCAT > SRR4302536.4522169/1‑94 (MQ=60)
GCCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATC > SRR4302536.5767854/1‑94 (MQ=60)
CCCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCA > SRR4302536.2041077/1‑94 (MQ=60)
CCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAACCATATTCCATCGGCATCAT > SRR4302536.4795499/1‑94 (MQ=60)
CCACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCAT > SRR4302536.3531782/1‑94 (MQ=60)
CACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATG > SRR4302536.3382929/1‑94 (MQ=60)
CACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATG < SRR4302536.4881901/94‑1 (MQ=60)
CACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATG > SRR4302536.2458487/1‑94 (MQ=60)
ACCAGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATGC > SRR4302536.5425561/1‑94 (MQ=60)
AGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATGCGAA > SRR4302536.5458808/1‑94 (MQ=60)
AGCATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTACATCGGCATCATGCGAT > SRR4302536.5556979/1‑94 (MQ=60)
CATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATGCGAATC < SRR4302536.2578857/94‑1 (MQ=60)
ATCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATGCGAATCG > SRR4302536.6044990/1‑94 (MQ=60)
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TGATCGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCGTCAGTTCTACCTGCTTGCCGAGTTTTCCCGCCAGATCACGCACCAGCCGGGGATAGCGACTAAAAACATATTCCATCGGCATCATGCGAATCG > NC_000913/1972198‑1972381
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
