Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,974,585	A→G	R193R (CGT→CGC)	motA ←	MotA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,974,585	0	A	G	100.0%	653.7 / NA	209	R193R (CGT→CGC)	motA	MotA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (110/99); total (110/99)

Only 100 of 218 total aligned reads displayed.

TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT  >  NC_000913/1974495‑1974674

tAATGGGAAAATAAACCCGTAAGCCAATAAAATGCCGAGGAAAGCCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCg                                                                                         <  1:5438605/93‑1 (MQ=255)

  aTGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGTGCGAt                                                                                       <  1:2168922/93‑1 (MQ=255)

  aTGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGAt                                                                                       <  1:5286790/93‑1 (MQ=255)

  aTGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGAt                                                                                       <  1:3166437/93‑1 (MQ=255)

  aTGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGAt                                                                                       >  1:2076276/1‑93 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                      >  1:4288302/1‑93 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                      <  2:4680148/93‑1 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                      <  1:2861746/93‑1 (MQ=255)

    ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCg                                                                                     <  1:2394562/93‑1 (MQ=255)

      ggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGc                                                                                   <  2:5199843/93‑1 (MQ=255)

      ggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGc                                                                                   <  2:568681/93‑1 (MQ=255)

       gAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCt                                                                                  >  1:6421745/1‑93 (MQ=255)

       gAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCt                                                                                  >  2:3659429/1‑93 (MQ=255)

       gAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCt                                                                                  <  1:515287/93‑1 (MQ=255)

        aaataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTg                                                                                 >  2:2564815/1‑93 (MQ=255)

         aataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGa                                                                                >  1:3502065/1‑93 (MQ=255)

           taaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAc                                                                              >  1:127068/1‑93 (MQ=255)

            aaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAcc                                                                             <  1:1526601/93‑1 (MQ=255)

            aaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAcc                                                                             >  2:3995469/1‑93 (MQ=255)

             aatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAcca                                                                            >  1:3065721/1‑92 (MQ=255)

              atCCTTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTa                                                                           <  2:3932520/93‑1 (MQ=255)

              atCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTa                                                                           >  1:3964776/1‑93 (MQ=255)

               tCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTaa                                                                          >  2:2192543/1‑93 (MQ=255)

               tCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTaa                                                                          >  2:862786/1‑93 (MQ=255)

               tCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTaa                                                                          <  1:6271841/93‑1 (MQ=255)

               tCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTaa                                                                          <  1:2328541/93‑1 (MQ=255)

                 cGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcg                                                                        <  2:2046963/93‑1 (MQ=255)

                  gTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcgc                                                                       >  1:2935714/1‑93 (MQ=255)

                  gTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcgc                                                                       >  2:5626665/1‑93 (MQ=255)

                   tAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcgcg                                                                      >  2:1245248/1‑93 (MQ=255)

                    aaGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcgcgg                                                                     >  1:144921/1‑92 (MQ=255)

                      gCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGa                                                                   <  2:5007553/93‑1 (MQ=255)

                      gCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGATGAACCTAACGCGTGa                                                                   >  2:1842574/1‑93 (MQ=255)

                       ccAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGaa                                                                  <  2:5509991/93‑1 (MQ=255)

                       ccAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGaa                                                                  >  1:46720/1‑93 (MQ=255)

                        cAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAc                                                                 >  2:6583409/1‑93 (MQ=255)

                        cAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAc                                                                 <  1:919131/93‑1 (MQ=255)

                         aaTAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACg                                                                >  1:3422495/1‑93 (MQ=255)

                         aaTAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACg                                                                >  1:76020/1‑93 (MQ=255)

                           tAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAAGCGTGAACGAc                                                              >  1:4906923/1‑93 (MQ=255)

                             aaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccc                                                            <  1:4698669/93‑1 (MQ=255)

                              aaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAcccc                                                           >  2:1571478/1‑93 (MQ=255)

                               aTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccccc                                                          <  1:3203035/93‑1 (MQ=255)

                                tGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCa                                                         >  1:4341507/1‑93 (MQ=255)

                                 gCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAt                                                        <  1:1003862/93‑1 (MQ=255)

                                     aGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACa                                                    <  2:4127697/93‑1 (MQ=255)

                                       gAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGc                                                  <  2:4478816/93‑1 (MQ=255)

                                        aaaGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGcc                                                 >  2:5484487/1‑93 (MQ=255)

                                        aaaGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGcc                                                 <  2:3373020/93‑1 (MQ=255)

                                         aaGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCg                                                >  2:4355866/1‑93 (MQ=255)

                                         aaGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCg                                                >  2:40627/1‑93 (MQ=255)

                                           gTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGca                                              >  2:220965/1‑93 (MQ=255)

                                             ccccACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGcaac                                            <  2:6178046/93‑1 (MQ=255)

                                              cccACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGcaaca                                           >  2:5165546/1‑93 (MQ=255)

                                              cccACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGcaaca                                           >  2:1788855/1‑93 (MQ=255)

                                               ccaccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGcaacaa                                          <  2:6614703/93‑1 (MQ=255)

                                                  ccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATAc                                       <  1:710490/93‑1 (MQ=255)

                                                  ccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATAc                                       <  2:6010737/93‑1 (MQ=255)

                                                    aTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCa                                     <  1:3694779/93‑1 (MQ=255)

                                                    aTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCa                                     <  1:4036502/93‑1 (MQ=255)

                                                       gCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAc                                  >  2:3070809/1‑93 (MQ=255)

                                                         aTGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGc                                >  2:3521408/1‑93 (MQ=255)

                                                         aTGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGc                                >  2:6705256/1‑93 (MQ=255)

                                                         aTGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCAATCAGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGc                                <  1:6730963/93‑1 (MQ=255)

                                                          tgtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGcc                               >  1:1171550/1‑93 (MQ=255)

                                                          tgtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGcc                               >  1:5111383/1‑93 (MQ=255)

                                                          tgtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGcc                               >  2:2241344/1‑93 (MQ=255)

                                                          tgtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGCGAACGACCCCCATTACAGCCGCAACAATACCAAACGcc                               >  1:557676/1‑93 (MQ=255)

                                                            tgCGATAAGCGCGCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGACCGACCCCCATTACAGCCGCAACAATACCAAACGCCgg                             <  1:5990424/93‑1 (MQ=255)

                                                             gCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGa                            <  1:375491/93‑1 (MQ=255)

                                                                aTAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAgg                         >  2:5267507/1‑92 (MQ=255)

                                                                aTAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGt                         <  2:3726610/93‑1 (MQ=255)

                                                                   aGCGCCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAg                      <  1:3341068/93‑1 (MQ=255)

                                                                   aGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAg                      <  2:4544715/93‑1 (MQ=255)

                                                                    gcgcgcCCAGCGCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGt                     <  2:2952721/93‑1 (MQ=255)

                                                                    gcgcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGt                     <  2:3746296/93‑1 (MQ=255)

                                                                     cgcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTc                    <  2:251236/93‑1 (MQ=255)

                                                                     cgcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTc                    <  1:788709/93‑1 (MQ=255)

                                                                      gcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTcc                   >  1:2252194/1‑93 (MQ=255)

                                                                        aCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTcccc                 >  1:2491340/1‑93 (MQ=255)

                                                                        aCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTcccc                 >  2:1067463/1‑93 (MQ=255)

                                                                         cccAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCg                >  1:6127769/1‑93 (MQ=255)

                                                                          ccAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGa               >  2:4188972/1‑93 (MQ=255)

                                                                          ccAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGa               >  1:6644967/1‑93 (MQ=255)

                                                                           cAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAc              >  1:1747252/1‑93 (MQ=255)

                                                                            aGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAcc             <  1:3479312/93‑1 (MQ=255)

                                                                             gCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCa            >  1:4814360/1‑93 (MQ=255)

                                                                                cggcggCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgcg         >  1:1363597/1‑93 (MQ=255)

                                                                                cggcggCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgcg         >  1:5344277/1‑93 (MQ=255)

                                                                                cggcggCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgcg         >  2:3805560/1‑93 (MQ=255)

                                                                                 ggcggcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgcgc        <  2:4398977/93‑1 (MQ=255)

                                                                                 ggcggcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgcgc        >  1:411688/1‑93 (MQ=255)

                                                                                  gcggcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGcc       <  1:2767751/93‑1 (MQ=255)

                                                                                  gcggcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGcc       <  2:591654/93‑1 (MQ=255)

                                                                                   cggcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCa      <  2:2308015/93‑1 (MQ=255)

                                                                                     gcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCCGCGCCAgc    >  2:1373764/1‑92 (MQ=255)

                                                                                      cAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGAc   <  2:5384856/93‑1 (MQ=255)

                                                                                      cAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGAc   >  2:2733341/1‑93 (MQ=255)

                                                                                       aGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACt  >  2:4776313/1‑93 (MQ=255)

                                                                                       aGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACt  >  1:5793981/1‑93 (MQ=255)

TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT  >  NC_000913/1974495‑1974674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  >  NC_000913/1974492‑1974678

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGG                                                                                               >  SRR4302536.1493556/1‑94 (MQ=60)

 GCTAATGGGGAAATAAAGCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCCCCACCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGC                                                                                              <  SRR4302536.807116/94‑1 (MQ=60)

  CTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCG                                                                                             >  SRR4302536.2945861/1‑94 (MQ=60)

  CTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCG                                                                                             >  SRR4302536.6376489/1‑94 (MQ=60)

  CTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCG                                                                                             >  SRR4302536.532046/1‑94 (MQ=60)

   TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGA                                                                                            >  SRR4302536.170365/1‑94 (MQ=60)

   TAATGGGAAAATAAACCCGTAAGCCAATAAAATGCCGAGGAAAGCCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGA                                                                                            <  SRR4302536.5601253/94‑1 (MQ=60)

    AATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGAT                                                                                           >  SRR4302536.2138808/1‑94 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGTGCGATC                                                                                          <  SRR4302536.2234209/94‑1 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          >  SRR4302536.4416425/1‑94 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          <  SRR4302536.3259205/94‑1 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          <  SRR4302536.5444402/94‑1 (MQ=60)

      TGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCG                                                                                         <  SRR4302536.2946313/94‑1 (MQ=60)

       GGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGG                                                                                        <  SRR4302536.4388773/94‑1 (MQ=60)

       GGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGG                                                                                        <  SRR4302536.2467047/94‑1 (MQ=60)

        GGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGC                                                                                       >  SRR4302536.231471/1‑94 (MQ=60)

        GGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGC                                                                                       >  SRR4302536.3158271/1‑94 (MQ=60)

         GGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCT                                                                                      >  SRR4302536.6613678/1‑94 (MQ=60)

         GGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCT                                                                                      >  SRR4302536.2422997/1‑94 (MQ=60)

         GGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCT                                                                                      >  SRR4302536.3087724/1‑94 (MQ=60)

          GAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTG                                                                                     >  SRR4302536.6606311/1‑94 (MQ=60)

          GAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTG                                                                                     <  SRR4302536.528508/94‑1 (MQ=60)

           AAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGA                                                                                    >  SRR4302536.3606567/1‑94 (MQ=60)

            ANTAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCANCCNNCTCGGCGGCAGGGNNNNNGGCTNAA                                                                                   >  SRR4302536.6844118/1‑94 (MQ=60)

             ATAAATCTGAAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAC                                                                                  <  SRR4302536.6355232/94‑1 (MQ=60)

             ATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAC                                                                                  >  SRR4302536.5548399/1‑94 (MQ=60)

             ATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAC                                                                                  >  SRR4302536.130421/1‑94 (MQ=60)

              AAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACC                                                                                 <  SRR4302536.468148/94‑1 (MQ=60)

               AAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCT                                                                                >  SRR4302536.3341659/1‑94 (MQ=60)

               AAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCT                                                                                <  SRR4302536.1571521/94‑1 (MQ=60)

               AAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCA                                                                                >  SRR4302536.3155606/1‑94 (MQ=60)

                AATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTA                                                                               <  SRR4302536.609629/94‑1 (MQ=60)

                AATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTA                                                                               >  SRR4302536.4082487/1‑94 (MQ=60)

                  TCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAC                                                                             <  SRR4302536.1188697/94‑1 (MQ=60)

                  TCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAC                                                                             <  SRR4302536.2399205/94‑1 (MQ=60)

                  TCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAC                                                                             <  SRR4302536.6458702/94‑1 (MQ=60)

                    CGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGC                                                                           >  SRR4302536.3022325/1‑94 (MQ=60)

                      TAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGG                                                                         >  SRR4302536.148702/1‑94 (MQ=60)

                         GCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAA                                                                      >  SRR4302536.48003/1‑94 (MQ=60)

                         GCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAA                                                                      >  SRR4302536.3744736/1‑94 (MQ=60)

                          CCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAC                                                                     <  SRR4302536.3601047/94‑1 (MQ=60)

                           CAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACG                                                                    >  SRR4302536.78064/1‑94 (MQ=60)

                           CAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACG                                                                    <  SRR4302536.946222/94‑1 (MQ=60)

                           CAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACG                                                                    >  SRR4302536.3524360/1‑94 (MQ=60)

                            AATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGA                                                                   >  SRR4302536.4837532/1‑94 (MQ=60)

                             ATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAAGCGTGAACGAC                                                                  >  SRR4302536.5054438/1‑94 (MQ=60)

                              TAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACC                                                                 <  SRR4302536.1217103/94‑1 (MQ=60)

                               AAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGACCCTAACGCGTGAACGACCC                                                                <  SRR4302536.5695094/94‑1 (MQ=60)

                               AAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCC                                                                >  SRR4302536.6933326/1‑94 (MQ=60)

                               AAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCC                                                                <  SRR4302536.2269569/94‑1 (MQ=60)

                               AAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGCGAACGACCC                                                                >  SRR4302536.1542607/1‑94 (MQ=60)

                                AAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCA                                                               <  SRR4302536.4839953/94‑1 (MQ=60)

                                  ATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCA                                                             <  SRR4302536.3296963/94‑1 (MQ=60)

                                  ATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCA                                                             >  SRR4302536.4471507/1‑94 (MQ=60)

                                  ATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCA                                                             <  SRR4302536.936961/94‑1 (MQ=60)

                                   TGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAT                                                            <  SRR4302536.4905362/94‑1 (MQ=60)

                                    GCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATT                                                           <  SRR4302536.1033485/94‑1 (MQ=60)

                                     CCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTA                                                          <  SRR4302536.1601735/94‑1 (MQ=60)

                                       ccggaacgtaCCCACCATCACATGTGCGACAAGCGCACCCAGCTCGGCGGCAGGGCGATCAGCTGGACCTAACCCGTGAACGACCCCCATTACA                                                        >  SRR4302536.1459507/11‑94 (MQ=60)

                                        AGGAAACTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGCCCCCCATTACAG                                                       <  SRR4302536.5859663/94‑1 (MQ=60)

                                           acccccccccctccacgtggacaaaaagcCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCG                                                    <  SRR4302536.2983245/65‑1 (MQ=60)

                                               TCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAAC                                                <  SRR4302536.6876927/94‑1 (MQ=60)

                                                CCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACA                                               >  SRR4302536.3579915/1‑94 (MQ=60)

                                                 CCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAA                                              >  SRR4302536.3518872/1‑94 (MQ=60)

                                                 CCCACCATCGCACGTGCGATAAGCGCACACAGCTCGGCGGCACGGGGATCGGCTGAACCTAACGCCTGAACAACCCCCATTACCGCCGCAACAA                                              >  SRR4302536.2620881/1‑94 (MQ=60)

                                                   CACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATA                                            >  SRR4302536.2992419/1‑94 (MQ=60)

                                                     CCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACC                                          >  SRR4302536.3240438/1‑94 (MQ=60)

                                                     CCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACC                                          <  SRR4302536.731258/94‑1 (MQ=60)

                                                      CATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCA                                         <  SRR4302536.764366/94‑1 (MQ=60)

                                                      CATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCA                                         <  SRR4302536.3708567/94‑1 (MQ=60)

                                                      CATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATAACA                                         >  SRR4302536.5951733/1‑94 (MQ=60)

                                                       ATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAA                                        <  SRR4302536.4156196/94‑1 (MQ=60)

                                                       ATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAA                                        <  SRR4302536.3805274/94‑1 (MQ=60)

                                                        TCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAA                                       >  SRR4302536.5235088/1‑94 (MQ=60)

                                                         agaATGTGCGATAAGCGAACCCAGCTCGGCGGCAGGGCGGTCGGCTGAAACTAACGCGTGAACGACCCCCATTACAGCTGAAAAAATACCAAAA                                      >  SRR4302536.1266535/4‑94 (MQ=60)

                                                         CGGATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCACAC                                      <  SRR4302536.4328364/94‑1 (MQ=60)

                                                          GCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACG                                     <  SRR4302536.3277092/94‑1 (MQ=60)

                                                           CATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGC                                    >  SRR4302536.5487231/1‑94 (MQ=60)

                                                           CATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGC                                    >  SRR4302536.5053489/1‑94 (MQ=60)

                                                            ATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCC                                   >  SRR4302536.2484935/1‑94 (MQ=60)

                                                            ATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCC                                   >  SRR4302536.1206811/1‑94 (MQ=60)

                                                            ATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCC                                   >  SRR4302536.5264127/1‑94 (MQ=60)

                                                            ATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGCGAACGACCCCCATTACAGCCGCAACAATACCAAACGCC                                   >  SRR4302536.571876/1‑94 (MQ=60)

                                                            ATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCAATCAGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCC                                   <  SRR4302536.6931050/94‑1 (MQ=60)

                                                             TGTGCGATAAGCCCTCCCAGCTTGGCGCAAGGACGCTCGTCTGAACTTAACGCCTAAACGACCCCCATTACAGCCGCACCAATCCCAAACGCCG                                  <  SRR4302536.3223770/94‑1 (MQ=23)

                                                               TGCGATAAGCGCGCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGACCGACCCCCATTACAGCCGCAACAATACCAAACGCCGGA                                <  SRR4302536.6169022/94‑1 (MQ=60)

                                                               TGCGATAAGCGCCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGA                                <  SRR4302536.5282633/94‑1 (MQ=60)

                                                                GCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAA                               <  SRR4302536.385382/94‑1 (MQ=60)

                                                                  GATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGT                             <  SRR4302536.2780546/94‑1 (MQ=60)

                                                                     AAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAG                          <  SRR4302536.6838091/94‑1 (MQ=60)

                                                                     AAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAG                          <  SRR4302536.6617081/94‑1 (MQ=60)

                                                                     AAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAG                          <  SRR4302536.1480692/94‑1 (MQ=60)

                                                                     AAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAG                          <  SRR4302536.6296601/94‑1 (MQ=60)

                                                                      AGCGCCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGT                         <  SRR4302536.3440054/94‑1 (MQ=60)

                                                                        CGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCC                       <  SRR4302536.811801/94‑1 (MQ=60)

                                                                        CGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCC                       >  SRR4302536.2320387/1‑94 (MQ=60)

                                                                         GCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCC                      <  SRR4302536.861091/94‑1 (MQ=60)

                                                                          CACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCC                     >  SRR4302536.2566488/1‑94 (MQ=60)

                                                                           CCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCG                    <  SRR4302536.508680/94‑1 (MQ=60)

                                                                           ACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCG                    >  SRR4302536.6310408/1‑94 (MQ=60)

                                                                           ACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCG                    >  SRR4302536.4207197/1‑94 (MQ=60)

                                                                            CCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGA                   <  SRR4302536.2218879/94‑1 (MQ=60)

                                                                            CCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGA                   >  SRR4302536.6842533/1‑94 (MQ=60)

                                                                             CCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAC                  >  SRR4302536.2074590/1‑94 (MQ=60)

                                                                             CCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAC                  >  SRR4302536.1798143/1‑94 (MQ=60)

                                                                              CAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACC                 >  SRR4302536.401982/1‑94 (MQ=60)

                                                                               AGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCA                >  SRR4302536.4959209/1‑94 (MQ=60)

                                                                               AGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCA                <  SRR4302536.3583031/94‑1 (MQ=60)

                                                                                GCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAG               <  SRR4302536.1344954/94‑1 (MQ=60)

                                                                                 CTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGC              >  SRR4302536.2561487/1‑94 (MQ=60)

                                                                                  TCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCG             >  SRR4302536.5503881/1‑94 (MQ=60)

                                                                                  TCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCG             >  SRR4302536.1404234/1‑94 (MQ=60)

                                                                                   CGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGC            >  SRR4302536.422551/1‑94 (MQ=60)

                                                                                    GGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCC           <  SRR4302536.4469581/94‑1 (MQ=60)

                                                                                     GCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCA          <  SRR4302536.2850050/94‑1 (MQ=60)

                                                                                     GCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCA          <  SRR4302536.804936/94‑1 (MQ=60)

                                                                                      CGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAG         <  SRR4302536.5678048/94‑1 (MQ=60)

                                                                                       GGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGA        >  SRR4302536.4102525/1‑94 (MQ=60)

                                                                                         CAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT      >  SRR4302536.5966467/1‑94 (MQ=60)

                                                                                         CAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT      <  SRR4302536.4308507/94‑1 (MQ=60)

                                                                                         CAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT      >  SRR4302536.3854947/1‑94 (MQ=60)

                                                                                          AGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGCGCAGAGCCAGACTG     >  SRR4302536.2917933/1‑94 (MQ=60)

                                                                                          AGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTG     >  SRR4302536.4900871/1‑94 (MQ=60)

                                                                                          AGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTG     >  SRR4302536.1399938/1‑94 (MQ=60)

                                                                                            GGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTT   <  SRR4302536.962318/94‑1 (MQ=60)

                                                                                             GCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  <  SRR4302536.4971011/94‑1 (MQ=60)

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  >  NC_000913/1974492‑1974678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`