Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,975,051	G→A	A38V (GCC→GTC)	motA ←	MotA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,975,051	0	G	A	99.2%	935.0 / NA	251	A38V (GCC→GTC)	motA	MotA
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (138/111); minor base C (2/0); total (140/111)
Fisher's exact test for biased strand distribution p-value = 5.05e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 257 total aligned reads displayed.

GAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGGCAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACC  >  NC_000913/1974961‑1975140

 aGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACaa                                                                                        >  2:2730384/1‑93 (MQ=255)

 aGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACaa                                                                                        <  1:5391142/93‑1 (MQ=255)

  gCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACaat                                                                                       >  2:5859740/1‑93 (MQ=255)

   cgacgaAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACaata                                                                                      <  1:2032783/93‑1 (MQ=255)

       gaAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCa                                                                                  <  2:1849395/93‑1 (MQ=255)

         aaCAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCAcc                                                                                >  2:859925/1‑93 (MQ=255)

          aCAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCa                                                                               <  1:30503/93‑1 (MQ=255)

          aCAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCa                                                                               >  1:5914587/1‑93 (MQ=255)

           cAGCACCGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAg                                                                              <  1:4414830/93‑1 (MQ=255)

           cAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAg                                                                              <  2:5666864/93‑1 (MQ=255)

           cAGCAACGGCAGCGCCTTCAGCGGGCCTTTAATCGCTTTGCCATTATTGCCGACGATTAACGACACAATCCCTGCACCGACAATAATCACCAg                                                                              >  2:2685066/1‑93 (MQ=255)

            aGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGt                                                                             <  1:107331/93‑1 (MQ=255)

            aGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGt                                                                             <  1:332963/93‑1 (MQ=255)

             gCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGtt                                                                            >  1:6347372/1‑93 (MQ=255)

             gCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGtt                                                                            >  2:2078388/1‑93 (MQ=255)

             gCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGtt                                                                            >  1:3300350/1‑93 (MQ=255)

             gCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATACCTGCACCGACAATAATCACCAGtt                                                                            >  1:1804088/1‑93 (MQ=255)

              cAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTc                                                                           <  1:5582149/93‑1 (MQ=255)

               aaCGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCa                                                                          >  1:6094049/1‑93 (MQ=255)

               aaCGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCa                                                                          >  2:3125384/1‑93 (MQ=255)

               aaCGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCa                                                                          >  1:4468732/1‑93 (MQ=255)

               aaCGGAAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCa                                                                          >  2:4558704/1‑93 (MQ=255)

                aCGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAg                                                                         >  2:3116371/1‑93 (MQ=255)

                 cGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGc                                                                        >  1:4258792/1‑93 (MQ=255)

                  ggCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCg                                                                       >  1:3548191/1‑93 (MQ=255)

                    cAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCggg                                                                     <  1:518098/93‑1 (MQ=255)

                     aGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGt                                                                    >  2:1102659/1‑93 (MQ=255)

                     aGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGt                                                                    <  1:1130026/93‑1 (MQ=255)

                      gcgcCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGtt                                                                   >  2:2153887/1‑93 (MQ=255)

                      gcgcCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGtt                                                                   >  2:6053079/1‑93 (MQ=255)

                       ggcCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTg                                                                  <  2:3822218/92‑1 (MQ=255)

                       cgcCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTg                                                                  <  2:6171314/93‑1 (MQ=255)

                        cccTTCAGCGTGCTTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGa                                                                 <  1:3031608/92‑1 (MQ=255)

                         ccTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAt                                                                <  1:3382282/93‑1 (MQ=255)

                          cTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATa                                                               >  1:2108041/1‑93 (MQ=255)

                          cTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATa                                                               >  1:2696799/1‑93 (MQ=255)

                           ttCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGCCAATAATCACCAGTTCAGCGGGTTGATag                                                              >  2:279591/1‑93 (MQ=255)

                           ttCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATag                                                              >  2:4444760/1‑93 (MQ=255)

                           ttCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATag                                                              >  2:3910804/1‑93 (MQ=255)

                           ttCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATag                                                              <  1:5685884/93‑1 (MQ=255)

                              aGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGt                                                           <  2:636641/93‑1 (MQ=255)

                               gCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTg                                                          <  1:3603246/93‑1 (MQ=255)

                               gCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTg                                                          >  1:3836426/1‑93 (MQ=255)

                                cGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGc                                                         >  1:389642/1‑93 (MQ=255)

                                 gTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCt                                                        >  1:2586388/1‑93 (MQ=255)

                                 gTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCt                                                        <  2:4309397/93‑1 (MQ=255)

                                  tGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTc                                                       >  2:4292467/1‑93 (MQ=255)

                                   gCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTcc                                                      >  2:470333/1‑93 (MQ=255)

                                    ccTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCa                                                     <  2:6716862/93‑1 (MQ=255)

                                     cTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCaa                                                    >  1:2338828/1‑93 (MQ=255)

                                      tttAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAg                                                   >  2:1016612/1‑93 (MQ=255)

                                           tCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTc                                              <  2:3022573/93‑1 (MQ=255)

                                            cGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTcc                                             <  1:6275506/93‑1 (MQ=255)

                                              cTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCAc                                           >  1:6047718/1‑93 (MQ=255)

                                               tttGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCAcc                                          >  2:5101327/1‑93 (MQ=255)

                                               tttGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCAcc                                          <  2:4599397/93‑1 (MQ=255)

                                               tttGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCAcc                                          >  2:2488455/1‑93 (MQ=255)

                                                ttGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCg                                         >  2:6125386/1‑93 (MQ=255)

                                                ttGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGCGTTGATAGAGTTCTCCAAGGCTTCCCCCg                                         <  1:2799131/93‑1 (MQ=255)

                                                 tGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCgg                                        <  1:4101652/93‑1 (MQ=255)

                                                   ccATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtc                                      <  2:2983469/93‑1 (MQ=255)

                                                     attattGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtcat                                    >  2:174730/1‑93 (MQ=255)

                                                     attattGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtcat                                    <  2:4786752/93‑1 (MQ=255)

                                                      ttattGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtcatc                                   <  1:4846449/93‑1 (MQ=255)

                                                      ttattGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtcatc                                   <  1:3439262/93‑1 (MQ=255)

                                                        attGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCaa                                 >  2:2323400/1‑93 (MQ=255)

                                                         ttGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCaaa                                >  2:6344697/1‑93 (MQ=255)

                                                             cgacgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAAc                            >  1:1728586/1‑93 (MQ=255)

                                                              gacgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAACTAAca                           >  1:798906/1‑92 (MQ=255)

                                                              gacgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAAcc                           <  2:1506650/93‑1 (MQ=255)

                                                              gacgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGCCATCAAATAAcc                           >  2:6532646/1‑93 (MQ=255)

                                                               acgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAAccg                          >  1:2995238/1‑93 (MQ=255)

                                                                cgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAAccgc                         <  1:6257601/93‑1 (MQ=255)

                                                                cgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAAccgc                         <  2:5591796/93‑1 (MQ=255)

                                                                 gaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAAccgcc                        >  1:2651833/1‑93 (MQ=255)

                                                                 gaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAAccgcc                        <  1:820917/93‑1 (MQ=255)

                                                                  aTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAAccgccg                       <  2:318452/93‑1 (MQ=255)

                                                                   tAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGa                      >  1:1111232/1‑93 (MQ=255)

                                                                     aaCGACCAAACCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGaaa                    <  1:6597976/93‑1 (MQ=255)

                                                                      aCGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGaaaa                   <  1:4569656/93‑1 (MQ=255)

                                                                        gACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACt                 >  1:6696539/1‑93 (MQ=255)

                                                                        gACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACt                 <  1:482782/93‑1 (MQ=255)

                                                                           caaaTCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTa              >  1:5308672/3‑93 (MQ=255)

                                                                            cAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTAc             <  2:1930091/93‑1 (MQ=255)

                                                                            cAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTAc             >  1:453166/1‑93 (MQ=255)

                                                                            cAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTAc             >  2:5332528/1‑93 (MQ=255)

                                                                             aaTCCCTGCCCCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTAcc            <  2:411688/93‑1 (MQ=255)

                                                                             aaTCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTAcc            <  1:21335/93‑1 (MQ=255)

                                                                              aTCCCTGCACCGACAATAATCACCAGTTCAGCGGGGTGATAGAGTGCTCCAAGGCTTCCACCGGTCAGCAAATAACCGCCGAAAACTGTACCg           >  1:1672168/1‑93 (MQ=255)

                                                                               tCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCga          >  2:3569626/1‑93 (MQ=255)

                                                                               tCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCga          >  1:6135961/1‑93 (MQ=255)

                                                                                 ccTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCgaga        >  2:1992064/1‑93 (MQ=255)

                                                                                   tGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGaac      <  2:5275088/93‑1 (MQ=255)

                                                                                    gCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGaaca     >  1:3314278/1‑93 (MQ=255)

                                                                                     cACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGaacaa    <  1:6490738/93‑1 (MQ=255)

                                                                                     cACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGaacaa    <  1:1314544/93‑1 (MQ=255)

                                                                                      aCCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGaacaac   >  1:4185384/1‑93 (MQ=255)

                                                                                      aCCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGaacaac   <  2:1690701/93‑1 (MQ=255)

                                                                                       ccGACAATAATCACCTGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAATCGCCGAAAACTGTTCCGAGAACAAcc  >  1:6729270/1‑93 (MQ=255)

                                                                                       ccGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAAcc  >  1:5955039/1‑93 (MQ=255)

GAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGGCAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACC  >  NC_000913/1974961‑1975140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGGCAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGG  >  NC_000913/1974959‑1975143

TGGAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGAC                                                                                             >  SRR4302536.5722441/1‑94 (MQ=60)

   AGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAAT                                                                                          >  SRR4302536.2154790/1‑94 (MQ=60)

   AGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAAT                                                                                          <  SRR4302536.5552093/94‑1 (MQ=60)

   AGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAAT                                                                                          >  SRR4302536.6349088/1‑94 (MQ=60)

   AGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAAT                                                                                          <  SRR4302536.6795093/94‑1 (MQ=60)

    GCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATA                                                                                         >  SRR4302536.4974231/1‑94 (MQ=60)

     CGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAA                                                                                        <  SRR4302536.2093995/94‑1 (MQ=60)

         GAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCAC                                                                                    >  SRR4302536.840012/1‑94 (MQ=60)

         GAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCAC                                                                                    >  SRR4302536.481296/1‑94 (MQ=60)

         GAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCAC                                                                                    <  SRR4302536.6663104/94‑1 (MQ=60)

           AACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCA                                                                                  >  SRR4302536.6090758/1‑94 (MQ=60)

            ACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAG                                                                                 <  SRR4302536.31342/94‑1 (MQ=60)

             CAGCACCGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGT                                                                                <  SRR4302536.4546963/94‑1 (MQ=60)

             CAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCCGT                                                                                >  SRR4302536.5288198/1‑94 (MQ=60)

             CAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGT                                                                                <  SRR4302536.2177500/94‑1 (MQ=60)

              AGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTT                                                                               <  SRR4302536.341803/94‑1 (MQ=60)

              AGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTT                                                                               >  SRR4302536.6536454/1‑94 (MQ=60)

              AGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTT                                                                               >  SRR4302536.3397658/1‑94 (MQ=60)

              AGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTT                                                                               <  SRR4302536.110184/94‑1 (MQ=60)

              AGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTT                                                                               <  SRR4302536.570941/94‑1 (MQ=60)

              AGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTT                                                                               >  SRR4302536.701028/1‑94 (MQ=60)

              AGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTT                                                                               >  SRR4302536.1626158/1‑94 (MQ=60)

              AGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATACCTGCACCGACAATAATCACCAGTT                                                                               >  SRR4302536.1858541/1‑94 (MQ=60)

                CAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCA                                                                             <  SRR4302536.5748258/94‑1 (MQ=60)

                CAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCA                                                                             >  SRR4302536.6275767/1‑94 (MQ=60)

                CAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCA                                                                             <  SRR4302536.6031675/94‑1 (MQ=60)

                CAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCA                                                                             >  SRR4302536.4602976/1‑94 (MQ=60)

                 AACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAG                                                                            <  SRR4302536.3426347/94‑1 (MQ=60)

                 AACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAG                                                                            >  SRR4302536.4252960/1‑94 (MQ=60)

                  ACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGC                                                                           >  SRR4302536.4385694/1‑94 (MQ=60)

                  ACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGC                                                                           >  SRR4302536.4460098/1‑94 (MQ=60)

                   CGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCG                                                                          >  SRR4302536.3654277/1‑94 (MQ=60)

                      CAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGT                                                                       <  SRR4302536.531383/94‑1 (MQ=60)

                      CAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGT                                                                       >  SRR4302536.3413593/1‑94 (MQ=60)

                       AGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCTGTTCAGCGGGTT                                                                      >  SRR4302536.4522764/1‑94 (MQ=60)

                       AGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTT                                                                      <  SRR4302536.2483127/94‑1 (MQ=60)

                       AGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTT                                                                      <  SRR4302536.6187374/94‑1 (MQ=60)

                       AGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTT                                                                      <  SRR4302536.1163989/94‑1 (MQ=60)

                       AGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTT                                                                      <  SRR4302536.6693920/94‑1 (MQ=60)

                        GCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTG                                                                     >  SRR4302536.4737550/1‑94 (MQ=60)

                        GCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTG                                                                     <  SRR4302536.2094903/94‑1 (MQ=60)

                         CGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGA                                                                    >  SRR4302536.594241/1‑94 (MQ=60)

                          GCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAT                                                                   <  SRR4302536.3499741/94‑1 (MQ=60)

                          CCCTTCAGCGTGCTTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAT                                                                   <  SRR4302536.3120688/94‑1 (MQ=60)

                          CCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAT                                                                   <  SRR4302536.3662102/94‑1 (MQ=60)

                           CCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATA                                                                  >  SRR4302536.2171380/1‑94 (MQ=60)

                           CCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATA                                                                  <  SRR4302536.3482809/94‑1 (MQ=60)

                           CCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATA                                                                  >  SRR4302536.2777282/1‑94 (MQ=60)

                            CTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAG                                                                 <  SRR4302536.4647047/94‑1 (MQ=60)

                            CTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACACAATCGCTGCACCGACAATAATCACCAGCTCAGCGGGTTGATAG                                                                 >  SRR4302536.5190273/1‑94 (MQ=60)

                             TTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGA                                                                >  SRR4302536.999641/1‑94 (MQ=60)

                             TTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGA                                                                <  SRR4302536.5854951/94‑1 (MQ=60)

                              TCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAG                                                               >  SRR4302536.4021194/1‑94 (MQ=60)

                              TCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAG                                                               <  SRR4302536.1836607/94‑1 (MQ=60)

                              TCAGCGGGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAG                                                               <  SRR4302536.5015477/94‑1 (MQ=60)

                               tctaaggtCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGT                                                              <  SRR4302536.5774751/86‑1 (MQ=60)

                               CAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACTATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGT                                                              <  SRR4302536.3392064/94‑1 (MQ=60)

                               CAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGT                                                              <  SRR4302536.5378706/94‑1 (MQ=60)

                                AGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTG                                                             <  SRR4302536.6093127/94‑1 (MQ=60)

                                AGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTG                                                             <  SRR4302536.6466910/94‑1 (MQ=60)

                                AGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTG                                                             >  SRR4302536.3950669/1‑94 (MQ=60)

                                AGCGTGCCTTTAATCGCTTTGACATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTG                                                             >  SRR4302536.3125554/1‑94 (MQ=60)

                                 GCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGC                                                            <  SRR4302536.3710993/94‑1 (MQ=60)

                                 GCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGC                                                            >  SRR4302536.399925/1‑94 (MQ=60)

                                 GCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATAACCCGTTCAGCGGGTTGATAGAGTGC                                                            >  SRR4302536.544479/1‑94 (MQ=60)

                                  CGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCT                                                           >  SRR4302536.1533615/1‑94 (MQ=60)

                                  CGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCT                                                           >  SRR4302536.2664090/1‑94 (MQ=60)

                                   GTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTC                                                          >  SRR4302536.217597/1‑94 (MQ=60)

                                    TGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCC                                                         >  SRR4302536.3403075/1‑94 (MQ=60)

                                     GCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCA                                                        >  SRR4302536.1155254/1‑94 (MQ=60)

                                      CCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAA                                                       >  SRR4302536.2409780/1‑94 (MQ=60)

                                      CCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCAAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAA                                                       >  SRR4302536.2086424/1‑94 (MQ=60)

                                       CTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAG                                                      >  SRR4302536.2911305/1‑94 (MQ=60)

                                         TTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGC                                                    >  SRR4302536.2445571/1‑94 (MQ=60)

                                          TAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCT                                                   >  SRR4302536.4547069/1‑94 (MQ=60)

                                          TAATCGCTTGGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCT                                                   <  SRR4302536.3119116/94‑1 (MQ=60)

                                           AATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTT                                                  <  SRR4302536.5404890/94‑1 (MQ=60)

                                             TCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCC                                                >  SRR4302536.771839/1‑94 (MQ=60)

                                              CGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCA                                               <  SRR4302536.4380178/94‑1 (MQ=60)

                                              CGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCA                                               <  SRR4302536.6462482/94‑1 (MQ=60)

                                              CGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCA                                               <  SRR4302536.4623731/94‑1 (MQ=60)

                                               GCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCAC                                              >  SRR4302536.6228102/1‑94 (MQ=60)

                                                CTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACC                                             >  SRR4302536.3751236/1‑94 (MQ=60)

                                                CTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACC                                             >  SRR4302536.6156801/1‑94 (MQ=60)

                                                 TTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCG                                            >  SRR4302536.3439173/1‑94 (MQ=60)

                                                  TTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGCGTTGATAGAGTTCTCCAAGGCTTCCCCCGG                                           <  SRR4302536.2882150/94‑1 (MQ=60)

                                                   TGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGT                                          <  SRR4302536.4223336/94‑1 (MQ=60)

                                                   TGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTCGATAGAGTGCTCCAAGGCTTCCACCGGC                                          >  SRR4302536.2763392/1‑94 (MQ=60)

                                                      CATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCAT                                       >  SRR4302536.3347542/1‑94 (MQ=60)

                                                       ATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATC                                      >  SRR4302536.4317901/1‑94 (MQ=60)

                                                       ATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATC                                      >  SRR4302536.6315481/1‑94 (MQ=60)

                                                        TTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCA                                     <  SRR4302536.4992287/94‑1 (MQ=60)

                                                        TTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCA                                     <  SRR4302536.3541685/94‑1 (MQ=60)

                                                        TTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCA                                     <  SRR4302536.998197/94‑1 (MQ=60)

                                                         TATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAA                                    <  SRR4302536.1797791/94‑1 (MQ=60)

                                                           TTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAAT                                  <  SRR4302536.3997247/94‑1 (MQ=60)

                                                             GCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAA                                <  SRR4302536.6239888/94‑1 (MQ=60)

                                                              CCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAAC                               >  SRR4302536.1778497/1‑94 (MQ=60)

                                                               CGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAACTAACA                              >  SRR4302536.822331/1‑94 (MQ=60)

                                                                GACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCG                             <  SRR4302536.3546086/94‑1 (MQ=60)

                                                                GACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCG                             >  SRR4302536.3083335/1‑94 (MQ=60)

                                                                GACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTCATAGAGGGCTCCAAGGCTTCCACCGGTCATCAAATAACCG                             >  SRR4302536.2745952/1‑94 (MQ=60)

                                                                  CGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCC                           <  SRR4302536.1138276/94‑1 (MQ=60)

                                                                  CGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCC                           <  SRR4302536.6444027/94‑1 (MQ=60)

                                                                  CGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCC                           >  SRR4302536.6496806/1‑94 (MQ=60)

                                                                  CGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCC                           >  SRR4302536.2731245/1‑94 (MQ=60)

                                                                  CGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCC                           <  SRR4302536.285693/94‑1 (MQ=60)

                                                                   GATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCG                          <  SRR4302536.845070/94‑1 (MQ=60)

                                                                   GATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCG                          >  SRR4302536.4195975/1‑94 (MQ=60)

                                                                    ATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGA                         >  SRR4302536.1144581/1‑94 (MQ=60)

                                                                       AACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAA                      >  SRR4302536.1149308/1‑94 (MQ=60)

                                                                       AACGACCAAATCCCTGCACCCACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAA                      >  SRR4302536.6722252/1‑94 (MQ=60)

                                                                       AACGACCAAACCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAA                      <  SRR4302536.6794230/94‑1 (MQ=60)

                                                                        ACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAAC                     <  SRR4302536.4706785/94‑1 (MQ=60)

                                                                         CGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACT                    >  SRR4302536.6895429/1‑94 (MQ=60)

                                                                         CGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACT                    >  SRR4302536.6895430/1‑94 (MQ=60)

                                                                         CGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACT                    >  SRR4302536.2928422/1‑94 (MQ=60)

                                                                          ccCCCAATCCCTGCACCCACAATAATCACCAGTGCAGCGGGTTGATAGAGTCCCCCACGGCTTCCGCGGGTCATCAAATAACCGCCGAAAACTG                   <  SRR4302536.190049/92‑1 (MQ=60)

                                                                          GACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTG                   >  SRR4302536.6806933/1‑94 (MQ=60)

                                                                          GACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTG                   <  SRR4302536.495328/94‑1 (MQ=60)

                                                                          GACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTG                   >  SRR4302536.3810025/1‑94 (MQ=60)

                                                                            CCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTA                 <  SRR4302536.4682000/94‑1 (MQ=60)

                                                                            CCAAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTA                 >  SRR4302536.5467107/1‑94 (MQ=60)

                                                                             CCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTAC                <  SRR4302536.6263964/94‑1 (MQ=60)

                                                                             CCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTAC                >  SRR4302536.465062/1‑94 (MQ=60)

                                                                               AATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCG              <  SRR4302536.21937/94‑1 (MQ=60)

                                                                               AATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCG              <  SRR4302536.21935/94‑1 (MQ=60)

                                                                               AATCCCTGCACCGACAATAATCACCAGTTCAGCGGGGTGATAGAGTGCTCCAAGGCTTCCACCGGTCAGCAAATAACCGCCGAAAACTGTACCG              >  SRR4302536.1720663/1‑94 (MQ=60)

                                                                                ATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGA             >  SRR4302536.6318820/1‑94 (MQ=60)

                                                                                ATACCTGCACCGACAATAATCACCAGTTCAGCGGGTGGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGA             <  SRR4302536.3118152/94‑1 (MQ=60)

                                                                                 TCCCTGCGCCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAG            <  SRR4302536.6460439/94‑1 (MQ=60)

                                                                                 TCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAG            <  SRR4302536.275433/94‑1 (MQ=60)

                                                                                     TGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACA        >  SRR4302536.1757103/1‑94 (MQ=60)

                                                                                     TGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACA        >  SRR4302536.3412228/1‑94 (MQ=60)

                                                                                     TGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACA        >  SRR4302536.34980/1‑94 (MQ=60)

                                                                                      GCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAA       <  SRR4302536.1198358/94‑1 (MQ=60)

                                                                                      GCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAA       >  SRR4302536.5579913/1‑94 (MQ=60)

                                                                                       CACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAAC      <  SRR4302536.6684270/94‑1 (MQ=60)

                                                                                       CACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAAC      >  SRR4302536.2673982/1‑94 (MQ=60)

                                                                                       CACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAAC      <  SRR4302536.1353790/94‑1 (MQ=60)

                                                                                       CACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAAC      >  SRR4302536.4309743/1‑94 (MQ=60)

                                                                                        ACCGACAATAATCACCTGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAATCGCCGAAAACTGTTCCGAGAACAACC     >  SRR4302536.6929254/1‑94 (MQ=60)

                                                                                        ACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACC     >  SRR4302536.6132473/1‑94 (MQ=60)

                                                                                           GACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGG  >  SRR4302536.5410212/1‑94 (MQ=60)

                                                                                           GACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGG  <  SRR4302536.4986289/94‑1 (MQ=60)

                                                                                           GACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACAGAGAACAACCAGG  >  SRR4302536.2292301/1‑94 (MQ=60)

                                                                                           GACAATAATCACCAATTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGG  >  SRR4302536.6795342/1‑94 (MQ=60)

TGGAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGGCAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGG  >  NC_000913/1974959‑1975143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`