Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,153,900	+C	coding (616/3123 nt)	yegN →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,153,897	1	.	C	100.0%	621.7 / NA	193	A205P (GCC→CCC)	yegN	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (98/95); total (98/95)

Only 100 of 219 total aligned reads displayed.

AAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCG‑CCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCC  >  NC_000913/2153805‑2153984

   tctcGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGCCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCG‑gcc                                                                                      >  1:320152/1‑93 (MQ=255)

    ctcGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCG‑cccc                                                                                     <  2:5702493/93‑2 (MQ=255)

     tcGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCG‑cccct                                                                                    >  2:6385021/1‑91 (MQ=255)

     tcGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCG‑cccct                                                                                    <  2:299524/93‑3 (MQ=255)

     tcGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCG‑cccct                                                                                    <  1:839459/93‑3 (MQ=255)

      cGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCG‑cccctc                                                                                   <  1:317913/93‑4 (MQ=255)

      cGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCG‑cccctc                                                                                   <  1:3716392/93‑4 (MQ=255)

       gCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCG‑cccctcg                                                                                  >  1:5841081/1‑89 (MQ=255)

         aGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGc                                                                                 >  1:4363965/1‑93 (MQ=255)

          gATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGcc                                                                                <  2:2418182/93‑1 (MQ=255)

          gATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGcc                                                                                >  1:4908547/1‑93 (MQ=255)

           aTTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCt                                                                               <  1:5103561/93‑1 (MQ=255)

            tttCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTg                                                                              <  1:5358232/93‑1 (MQ=255)

             ttCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGa                                                                             >  1:1525794/1‑93 (MQ=255)

              tCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGAc                                                                            <  1:5590409/93‑1 (MQ=255)

               ccGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGAcc                                                                           >  2:5357558/1‑93 (MQ=255)

               ccGGCCTCGGCCTGGTGACGCTCTCCGGCAGTCAGCGTCCGTCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGAcc                                                                           <  2:3271039/93‑1 (MQ=255)

                cGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCa                                                                          >  1:2431471/1‑93 (MQ=255)

                cGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCa                                                                          >  1:1361422/1‑93 (MQ=255)

                 ggCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAg                                                                         >  2:755392/1‑93 (MQ=255)

                  gCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGc                                                                        >  2:6468765/1‑93 (MQ=255)

                    gTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGa                                                                      >  1:5733628/1‑93 (MQ=255)

                       ggCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAAc                                                                   <  1:4621988/93‑1 (MQ=255)

                         ccTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCg                                                                 <  1:1421186/93‑1 (MQ=255)

                         ccTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCg                                                                 >  1:5448800/1‑93 (MQ=255)

                         ccTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCg                                                                 <  1:16129/93‑1 (MQ=255)

                           tGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTg                                                               <  2:5692886/93‑1 (MQ=255)

                            ggTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTgc                                                              >  1:3192727/1‑93 (MQ=255)

                            ggTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCACGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTgc                                                              >  1:5297780/1‑93 (MQ=255)

                             gTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTgcg                                                             >  2:2740533/1‑93 (MQ=255)

                               gACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCa                                                           >  2:1874628/1‑93 (MQ=255)

                                aCGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCAc                                                          <  2:2179983/93‑1 (MQ=255)

                                aCGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCAc                                                          >  2:346580/1‑93 (MQ=255)

                                   cTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGc                                                       <  1:1875482/93‑1 (MQ=255)

                                    tttCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGcc                                                      >  2:6581131/1‑93 (MQ=255)

                                    tttCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGcc                                                      >  1:3103563/1‑93 (MQ=255)

                                    tttCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGcc                                                      <  2:6636955/93‑1 (MQ=255)

                                      tCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCAt                                                    <  2:2488399/93‑1 (MQ=255)

                                      tCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCAt                                                    <  2:4860800/93‑1 (MQ=255)

                                      tCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCAt                                                    <  1:659203/93‑1 (MQ=255)

                                           cggTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCg                                               <  1:5143365/93‑1 (MQ=255)

                                               cAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGgcgc                                           <  1:2760800/93‑1 (MQ=255)

                                               cAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGgcgc                                           >  2:1034425/1‑93 (MQ=255)

                                                 gCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTa                                         >  1:619499/1‑93 (MQ=255)

                                                 gCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTa                                         >  2:5979963/1‑93 (MQ=255)

                                                 gCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGAGTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCAGTACCGGCGCTa                                         >  2:6729734/1‑93 (MQ=255)

                                                   gTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAAc                                       <  2:1122654/93‑1 (MQ=255)

                                                    tCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACg                                      >  1:397596/1‑93 (MQ=255)

                                                    tCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACg                                      >  1:5119905/1‑93 (MQ=255)

                                                     ccGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGt                                     <  1:599977/93‑1 (MQ=255)

                                                      cGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGtt                                    <  2:3143074/93‑1 (MQ=255)

                                                       ggCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTa                                   >  2:5433321/1‑93 (MQ=255)

                                                        gCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTaa                                  <  2:397447/93‑1 (MQ=255)

                                                        gCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTaa                                  >  2:4461597/1‑93 (MQ=255)

                                                        gCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTaa                                  <  1:4247306/93‑1 (MQ=255)

                                                         cTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAAc                                 <  1:2254776/93‑1 (MQ=255)

                                                         cTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAAc                                 >  1:1994241/1‑93 (MQ=255)

                                                         cTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAAc                                 >  2:3912816/1‑93 (MQ=255)

                                                         cTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAAc                                 <  2:3293825/93‑1 (MQ=255)

                                                          tGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACt                                >  1:877800/1‑93 (MQ=255)

                                                          tGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACt                                <  2:5627602/93‑1 (MQ=255)

                                                           gTTCGCGTCAATCTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAGCCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTc                               <  1:806231/93‑1 (MQ=255)

                                                           gTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTc                               >  1:5863438/1‑93 (MQ=255)

                                                            ttCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCg                              >  2:6094671/1‑93 (MQ=255)

                                                              cgcgTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGc                            <  1:5335326/93‑1 (MQ=255)

                                                              cgcgTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGc                            >  2:2595848/1‑93 (MQ=255)

                                                               gcgTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCa                           >  2:3661051/1‑93 (MQ=255)

                                                                 gTCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCaaa                         >  2:2835328/1‑93 (MQ=255)

                                                                  tCAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCaaaa                        >  2:2006169/1‑93 (MQ=255)

                                                                   cAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAg                       <  1:5022323/93‑1 (MQ=255)

                                                                   cAAACTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAg                       >  1:5224260/1‑93 (MQ=255)

                                                                     aaCTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAACCCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGt                     <  1:2793091/93‑1 (MQ=255)

                                                                     aaCTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAgga                     >  2:79326/1‑92 (MQ=255)

                                                                     aaCTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAgga                     >  2:4322599/1‑92 (MQ=255)

                                                                     aaCTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGt                     <  1:3490372/93‑1 (MQ=255)

                                                                     aaCTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGt                     <  1:5629551/93‑1 (MQ=255)

                                                                      aCTTAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTa                    <  1:129452/93‑1 (MQ=255)

                                                                        ttAACGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGc                  >  2:4576730/1‑93 (MQ=255)

                                                                          aaCGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCt                <  1:4700056/93‑1 (MQ=255)

                                                                          aaCGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCt                >  2:5821043/1‑93 (MQ=255)

                                                                           aCGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTc               <  2:47417/93‑1 (MQ=255)

                                                                           aCGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTc               >  2:2885291/1‑93 (MQ=255)

                                                                           aCGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTc               <  1:268848/93‑1 (MQ=255)

                                                                           aCGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTc               <  1:6328335/93‑1 (MQ=255)

                                                                            cGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCg              >  2:5269135/1‑93 (MQ=255)

                                                                            cGCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCg              <  2:2709211/93‑1 (MQ=255)

                                                                             gCTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGa             <  2:3689291/93‑1 (MQ=255)

                                                                              cTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGAc            <  2:4372085/93‑1 (MQ=255)

                                                                              cTCAGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGAc            <  2:2297459/93‑1 (MQ=255)

                                                                                 aGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGc         >  2:5096453/1‑93 (MQ=255)

                                                                                 aGGCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGc         >  1:2648757/1‑93 (MQ=255)

                                                                                  ggCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGcc        <  1:1112968/93‑1 (MQ=255)

                                                                                   gCGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGccc       >  1:6375314/1‑93 (MQ=255)

                                                                                    cGATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCt      <  1:2028281/93‑1 (MQ=255)

                                                                                     gATTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCtt     >  2:5077179/1‑93 (MQ=255)

                                                                                      aTTGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTc    <  1:3790518/93‑1 (MQ=255)

                                                                                       ttGCCGCCCCTCGGCCTGACCAGCGAACCCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTcc   <  2:3136737/93‑1 (MQ=255)

                                                                                       ttGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTcc   >  2:5917203/1‑93 (MQ=255)

                                                                                       ttGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTcc   <  2:6227725/93‑1 (MQ=255)

                                                                                        tGCCGCCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTccc  >  1:6548938/1‑93 (MQ=255)

AAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCG‑CCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCC  >  NC_000913/2153805‑2153984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCG‑CC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTC  >  NC_000913/2153807‑2153992

ATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGCCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCG‑GC‑C                                                                                              >  SRR4302536.328639/1‑94 (MQ=60)

  CTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCG‑CC‑Cct                                                                                            <  SRR4302536.3861652/94‑3 (MQ=60)

   TCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCG‑CC‑Cctc                                                                                           <  SRR4302536.1421743/94‑4 (MQ=60)

   TCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCG‑CC‑Cctc                                                                                           <  SRR4302536.864144/94‑4 (MQ=60)

    CGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCG                                                                                           <  SRR4302536.326343/94‑1 (MQ=60)

    CGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCG                                                                                           >  SRR4302536.3249208/1‑94 (MQ=60)

    CGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCG                                                                                           >  SRR4302536.6015124/1‑94 (MQ=60)

    CGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCG                                                                                           <  SRR4302536.3827496/94‑1 (MQ=60)

    CGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCG                                                                                           >  SRR4302536.552485/1‑94 (MQ=60)

      CAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCACACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGC                                                                                         >  SRR4302536.3278690/1‑94 (MQ=60)

      CAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGC                                                                                         >  SRR4302536.4494375/1‑94 (MQ=60)

       AGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCC                                                                                        >  SRR4302536.5056100/1‑94 (MQ=60)

       AGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCC                                                                                        >  SRR4302536.6564034/1‑94 (MQ=60)

         ATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTG                                                                                      <  SRR4302536.5256132/94‑1 (MQ=60)

         ATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTG                                                                                      <  SRR4302536.5452058/94‑1 (MQ=60)

          TTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGA                                                                                     >  SRR4302536.5897890/1‑94 (MQ=60)

          TTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGA                                                                                     <  SRR4302536.5518109/94‑1 (MQ=60)

          TTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGA                                                                                     >  SRR4302536.1570697/1‑94 (MQ=60)

            TCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACC                                                                                   <  SRR4302536.5756664/94‑1 (MQ=60)

            TCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACC                                                                                   >  SRR4302536.5086531/1‑94 (MQ=60)

             CCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCA                                                                                  >  SRR4302536.2504999/1‑94 (MQ=60)

             CCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCA                                                                                  <  SRR4302536.6314392/94‑1 (MQ=60)

             CCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCA                                                                                  >  SRR4302536.1402004/1‑94 (MQ=60)

             CCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCA                                                                                  >  SRR4302536.2445650/1‑94 (MQ=60)

               GGCGTCGGCCTGTTGACGCTTTCCGGCGGTCAGCGTCCGGCTGATCGCGTCAAACTTAACGCTCAGGCGATTT‑CCG‑CCACTCGGCCTGACCACC                                                                                >  SRR4302536.1945669/1‑94 (MQ=60)

                 CGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGA                                                                              >  SRR4302536.5904170/1‑94 (MQ=60)

                 CGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGA                                                                              >  SRR4302536.1865408/1‑94 (MQ=60)

                  GTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTTGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAA                                                                             >  SRR4302536.5494121/1‑94 (MQ=60)

                     GGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACC                                                                          <  SRR4302536.890757/94‑1 (MQ=60)

                     GGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACC                                                                          <  SRR4302536.4760867/94‑1 (MQ=60)

                      GCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCG                                                                         >  SRR4302536.5611803/1‑94 (MQ=60)

                      GCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAAACG                                                                         >  SRR4302536.6326055/1‑94 (MQ=60)

                       CCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGT                                                                        <  SRR4302536.1463428/94‑1 (MQ=60)

                       CCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGT                                                                        <  SRR4302536.533710/94‑1 (MQ=60)

                       CCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGT                                                                        <  SRR4302536.16585/94‑1 (MQ=60)

                        CTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTG                                                                       >  SRR4302536.3068179/1‑94 (MQ=60)

                         TGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGC                                                                      >  SRR4302536.3286331/1‑94 (MQ=60)

                         TGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCACGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGC                                                                      >  SRR4302536.5455764/1‑94 (MQ=60)

                             GACACTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCAC                                                                  >  SRR4302536.6391011/1‑94 (MQ=60)

                              ACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACC                                                                 >  SRR4302536.3292968/1‑94 (MQ=60)

                                 CTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCC                                                              <  SRR4302536.1931931/94‑1 (MQ=60)

                                 CTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCC                                                              >  SRR4302536.3194135/1‑94 (MQ=60)

                                 CTTTCCGGCGGTCAGCGTCCGGCTGGTCGCGTCAAACTTAAAGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGggatcagcgcc                                                              >  SRR4302536.3117496/1‑83 (MQ=60)

                                  TTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCA                                                             <  SRR4302536.3575675/94‑1 (MQ=60)

                                  TTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCA                                                             <  SRR4302536.907172/94‑1 (MQ=60)

                                   TTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCAT                                                            <  SRR4302536.2054891/94‑1 (MQ=60)

                                   TTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCAT                                                            >  SRR4302536.4270923/1‑94 (MQ=60)

                                    TCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATT                                                           <  SRR4302536.678527/94‑1 (MQ=60)

                                     CCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTA                                                          <  SRR4302536.6877853/94‑1 (MQ=60)

                                       GGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACC                                                        <  SRR4302536.1339510/94‑1 (MQ=60)

                                         CGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGG                                                      <  SRR4302536.6826203/94‑1 (MQ=60)

                                         CGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGG                                                      <  SRR4302536.5296878/94‑1 (MQ=60)

                                          GGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGC                                                     <  SRR4302536.3685635/94‑1 (MQ=60)

                                             CAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCT                                                  <  SRR4302536.5776629/94‑1 (MQ=60)

                                             CAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCT                                                  <  SRR4302536.2842936/94‑1 (MQ=60)

                                              AGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTA                                                 >  SRR4302536.637910/1‑94 (MQ=60)

                                                CGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAAC                                               <  SRR4302536.2795288/94‑1 (MQ=60)

                                                 GTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACG                                              >  SRR4302536.5272888/1‑94 (MQ=60)

                                                 GTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACG                                              <  SRR4302536.5672028/94‑1 (MQ=60)

                                                 GTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACG                                              >  SRR4302536.408121/1‑94 (MQ=60)

                                                 GTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACC‑GCCAAACCGGGCGGACCGCCCTTACCGGCGCCAACGT                                             >  SRR4302536.4589630/1‑94 (MQ=60)

                                                   CCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTT                                            <  SRR4302536.617250/94‑1 (MQ=60)

                                                   CCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTT                                            <  SRR4302536.3919835/94‑1 (MQ=60)

                                                    CGGCTGTTCGCGTCAAACTTCACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTA                                           >  SRR4302536.6739430/1‑94 (MQ=60)

                                                     GGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAA                                          >  SRR4302536.5272445/1‑94 (MQ=60)

                                                      GCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAAC                                         <  SRR4302536.4373820/94‑1 (MQ=60)

                                                      GCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAAC                                         >  SRR4302536.2054238/1‑94 (MQ=60)

                                                       CTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACT                                        >  SRR4302536.903656/1‑94 (MQ=60)

                                                       CTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACT                                        <  SRR4302536.2323045/94‑1 (MQ=60)

                                                       CTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACT                                        <  SRR4302536.604117/94‑1 (MQ=60)

                                                        TGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTC                                       >  SRR4302536.6038115/1‑94 (MQ=60)

                                                         GTTCGCGTCAATCTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAGCCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCG                                      <  SRR4302536.829874/94‑1 (MQ=60)

                                                         GTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCG                                      <  SRR4302536.5934570/94‑1 (MQ=60)

                                                          TTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGG                                     >  SRR4302536.600596/1‑94 (MQ=60)

                                                           TCGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGC                                    <  SRR4302536.5242552/94‑1 (MQ=60)

                                                            CGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCA                                   <  SRR4302536.5494753/94‑1 (MQ=60)

                                                            CGCGTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCA                                   <  SRR4302536.1579929/94‑1 (MQ=60)

                                                               GTCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAA                                >  SRR4302536.2211545/1‑94 (MQ=60)

                                                                TCAAGCTTGACGCTCAGGCGATCC‑CCGCCC‑CTCGGCTTGCCCAGCGAAACCGTGCGCACCTCCTTTACCGGCGCTAACGTTATCTCGGCAAAAG                               <  SRR4302536.3273729/94‑1 (MQ=38)

                                                                TCAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAG                               >  SRR4302536.5379931/1‑94 (MQ=60)

                                                                 CAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGG                              <  SRR4302536.5172858/94‑1 (MQ=60)

                                                                 CAAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGG                              <  SRR4302536.5693411/94‑1 (MQ=60)

                                                                  AAACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGT                             >  SRR4302536.4874890/1‑94 (MQ=60)

                                                                   AACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAACCCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTA                            <  SRR4302536.2875984/94‑1 (MQ=60)

                                                                   AACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTA                            <  SRR4302536.1938225/94‑1 (MQ=60)

                                                                   AACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTA                            <  SRR4302536.4377790/94‑1 (MQ=60)

                                                                   AACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTA                            <  SRR4302536.3594479/94‑1 (MQ=60)

                                                                   AACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTA                            <  SRR4302536.5796793/94‑1 (MQ=60)

                                                                   AACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTA                            >  SRR4302536.4787187/1‑94 (MQ=60)

                                                                    ACTTAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAG                           <  SRR4302536.132864/94‑1 (MQ=60)

                                                                     attaacccaaAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGC                          <  SRR4302536.1526443/84‑1 (MQ=60)

                                                                       TAACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCT                        <  SRR4302536.1560360/94‑1 (MQ=60)

                                                                        AACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTC                       >  SRR4302536.1695013/1‑94 (MQ=60)

                                                                        AACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTC                       <  SRR4302536.4841381/94‑1 (MQ=60)

                                                                         ACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCG                      <  SRR4302536.276013/94‑1 (MQ=60)

                                                                         ACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCG                      <  SRR4302536.6516808/94‑1 (MQ=60)

                                                                         ACGCTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCG                      <  SRR4302536.5377002/94‑1 (MQ=60)

                                                                            CTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACG                   >  SRR4302536.2669674/1‑94 (MQ=60)

                                                                            CTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACG                   >  SRR4302536.5000068/1‑94 (MQ=60)

                                                                            CTCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACG                   >  SRR4302536.5508002/1‑94 (MQ=60)

                                                                             ctccgggaattgccgcCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACG                   <  SRR4302536.3540172/78‑1 (MQ=60)

                                                                             TCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGG                  <  SRR4302536.5294188/94‑1 (MQ=60)

                                                                             TCAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGG                  <  SRR4302536.6784509/94‑1 (MQ=60)

                                                                              CAGGCGATTGCCCC‑CC‑CTCGGCCTGACCAGCGAAACCGAGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCGAAAGGagggctggaaagc                 >  SRR4302536.2181144/1‑81 (MQ=60)

                                                                              CAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGC                 >  SRR4302536.2728103/1‑94 (MQ=60)

                                                                              CAGGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGC                 >  SRR4302536.1297598/1‑94 (MQ=60)

                                                                                GGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCC               <  SRR4302536.1146370/94‑1 (MQ=60)

                                                                                GGCGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCC               >  SRR4302536.6565316/1‑94 (MQ=60)

                                                                                  CGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTT             <  SRR4302536.2089346/94‑1 (MQ=60)

                                                                                  CGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTT             <  SRR4302536.3247296/94‑1 (MQ=60)

                                                                                  CGATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTT             <  SRR4302536.2512172/94‑1 (MQ=60)

                                                                                   GATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTC            <  SRR4302536.2848714/94‑1 (MQ=60)

                                                                                    ATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCC           <  SRR4302536.3903604/94‑1 (MQ=60)

                                                                                    ATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCC           >  SRR4302536.836917/1‑94 (MQ=60)

                                                                                    ATTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCC           <  SRR4302536.272054/94‑1 (MQ=60)

                                                                                    ATTG‑CCGCCC‑CTCGGCCTGACCACCGAAAACGCTCGCACCGCCATTACCGGCGCTAAAGTTAACTCGGCGAAAGGGATCCTCGACGGGCCTTCC           >  SRR4302536.499294/1‑94 (MQ=36)

                                                                                     TTG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCC          >  SRR4302536.6743951/1‑94 (MQ=60)

                                                                                      TG‑CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGACCTTCCCG         >  SRR4302536.6672845/1‑94 (MQ=60)

                                                                                       tgccacCC‑CTCGGCGTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGTCCCTTCCCG         <  SRR4302536.911005/88‑1 (MQ=60)

                                                                                         CCGCCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTG       >  SRR4302536.218013/1‑94 (MQ=60)

                                                                                           gcCC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCG     >  SRR4302536.1063406/3‑94 (MQ=60)

                                                                                           C‑CC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGG    >  SRR4302536.3877197/1‑94 (MQ=60)

                                                                                           C‑CC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGG    <  SRR4302536.5108059/94‑1 (MQ=60)

                                                                                           C‑CC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGG    >  SRR4302536.6155266/1‑94 (MQ=60)

                                                                                              C‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTC  <  SRR4302536.2118819/94‑1 (MQ=60)

ATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTG‑CCG‑CC‑CTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTC  >  NC_000913/2153807‑2153992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`