Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,154,412	G→A	P376P (CCG→CCA)	yegN →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,154,412	0	G	A	100.0%	875.1 / NA	242	P376P (CCG→CCA)	yegN	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (120/122); total (120/122)

Only 100 of 243 total aligned reads displayed.

ATTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCGCTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCGG  >  NC_000913/2154322‑2154501

aTTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACt                                                                                         >  1:3145586/1‑93 (MQ=255)

 ttGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTg                                                                                        >  2:6296710/1‑93 (MQ=255)

 ttGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTg                                                                                        >  2:2488861/1‑93 (MQ=255)

  tgatgaTGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGt                                                                                       >  2:4065424/1‑93 (MQ=255)

  tgatgaTGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGt                                                                                       <  1:4554698/93‑1 (MQ=255)

   gatgatGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTc                                                                                      <  2:1378858/93‑1 (MQ=255)

     tgatgGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGt                                                                                    >  1:2557762/1‑93 (MQ=255)

     tgatgGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGt                                                                                    <  1:6630761/93‑1 (MQ=255)

       atgGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTa                                                                                  <  1:5188359/93‑1 (MQ=255)

       atgGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTa                                                                                  <  1:5767154/93‑1 (MQ=255)

       atgGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTa                                                                                  >  2:5030572/1‑93 (MQ=255)

        tgGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTaa                                                                                 <  2:3449123/93‑1 (MQ=255)

          gCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATc                                                                               <  1:4830449/93‑1 (MQ=255)

          gCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATc                                                                               <  2:3426065/93‑1 (MQ=255)

          gCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATc                                                                               <  1:2805497/93‑1 (MQ=255)

            tATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCgg                                                                             >  1:1357597/1‑93 (MQ=255)

            tATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCgg                                                                             >  1:6128134/1‑93 (MQ=255)

               cgcgCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCAc                                                                          <  2:519021/93‑1 (MQ=255)

               cgcgCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCAc                                                                          <  2:1237211/93‑1 (MQ=255)

                gcgcTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACt                                                                         <  2:3994949/93‑1 (MQ=255)

                 cgcTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACtt                                                                        <  2:5371754/93‑1 (MQ=255)

                  gcTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACttt                                                                       <  2:5431495/93‑1 (MQ=255)

                   cTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGGTCTCCCACTGTCGTTAATCGGCCCTTTc                                                                      <  1:6393630/93‑1 (MQ=255)

                    tGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTcg                                                                     >  2:4847495/1‑93 (MQ=255)

                    tGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTcg                                                                     >  2:4283114/1‑93 (MQ=255)

                    tGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTcg                                                                     >  1:4050539/1‑93 (MQ=255)

                     ggTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTcgc                                                                    >  1:157804/1‑93 (MQ=255)

                     ggTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTcgc                                                                    <  1:2723761/93‑1 (MQ=255)

                     ggTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTcgc                                                                    <  1:4135393/93‑1 (MQ=255)

                      gTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTcgcg                                                                   >  2:215189/1‑93 (MQ=255)

                        aGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGt                                                                 >  1:5806007/1‑93 (MQ=255)

                         gTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGtt                                                                <  1:2014397/93‑1 (MQ=255)

                          tCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTa                                                               <  1:2882897/93‑1 (MQ=255)

                             tGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATgg                                                            >  2:3531638/1‑93 (MQ=255)

                              gATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGgt                                                           <  1:5351360/93‑1 (MQ=255)

                               aTTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGgtg                                                          >  1:1692250/1‑93 (MQ=255)

                                ttATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGgtgt                                                         <  2:3321606/93‑1 (MQ=255)

                                ttATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGgtgt                                                         <  1:4891056/93‑1 (MQ=255)

                                 tATCTTCCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGtt                                                        <  2:5513425/93‑1 (MQ=255)

                                 tATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGtt                                                        >  1:3027528/1‑93 (MQ=255)

                                 tATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGtt                                                        <  2:1758039/93‑1 (MQ=255)

                                  aTCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGttt                                                       >  2:4288343/1‑93 (MQ=255)

                                   tCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTtc                                                      >  1:4234566/1‑93 (MQ=255)

                                   tCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTtc                                                      <  1:6086897/93‑1 (MQ=255)

                                   tCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTtc                                                      <  2:459454/93‑1 (MQ=255)

                                   tCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTtc                                                      <  2:3927265/93‑1 (MQ=255)

                                     tACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTtctc                                                    >  1:1221115/1‑93 (MQ=255)

                                     tACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTtctc                                                    >  2:3265796/1‑93 (MQ=255)

                                     tACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTtctc                                                    >  1:5995931/1‑93 (MQ=255)

                                       ccTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGa                                                  <  2:3007410/93‑1 (MQ=255)

                                       ccTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGa                                                  >  2:4986671/1‑93 (MQ=255)

                                       ccTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGa                                                  >  2:6536146/1‑93 (MQ=255)

                                       ccTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGGGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGAGTTTCTCGa                                                  >  1:2175225/1‑93 (MQ=255)

                                        cTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGAt                                                 >  1:2401265/1‑93 (MQ=255)

                                         tGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGAtt                                                <  2:5715790/93‑1 (MQ=255)

                                         tGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGAtt                                                >  2:4167621/1‑93 (MQ=255)

                                          gTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGAttt                                               <  2:2889072/93‑1 (MQ=255)

                                            ttttGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGAttttt                                             <  1:3649981/93‑1 (MQ=255)

                                               tGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTtcaa                                          >  2:1392519/1‑93 (MQ=255)

                                                 cgcAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTtcaatc                                        <  2:2699370/93‑1 (MQ=255)

                                                   cAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTtcaatcaa                                      >  1:4348220/1‑93 (MQ=255)

                                                     atatTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATa                                    <  1:6337940/93‑1 (MQ=255)

                                                      tatTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATaa                                   >  2:391047/1‑93 (MQ=255)

                                                        ttCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAAcc                                 <  2:1487443/93‑1 (MQ=255)

                                                        ttCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAAcc                                 <  2:2492683/93‑1 (MQ=255)

                                                         tCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCt                                <  2:3609480/93‑1 (MQ=255)

                                                         tCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCt                                <  1:700232/93‑1 (MQ=255)

                                                          ccGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTg                               <  1:3261554/93‑1 (MQ=255)

                                                           cGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGa                              <  2:584929/93‑1 (MQ=255)

                                                            ggCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGac                             >  1:2224404/1‑93 (MQ=255)

                                                            ggCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGac                             >  2:691670/1‑93 (MQ=255)

                                                             gCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGaca                            >  1:6205676/1‑93 (MQ=255)

                                                             gCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGaca                            >  2:2197014/1‑93 (MQ=255)

                                                              cGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGacac                           >  2:4537870/1‑93 (MQ=255)

                                                               gACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACt                          >  1:5491429/1‑93 (MQ=255)

                                                                 ccATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGa                        >  2:1614752/1‑93 (MQ=255)

                                                                 ccATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGa                        <  2:5930674/93‑1 (MQ=255)

                                                                 ccATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGa                        <  2:2453175/93‑1 (MQ=255)

                                                                  catcatTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGAt                       >  2:1866630/1‑93 (MQ=255)

                                                                   atcatTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATg                      >  1:3437900/1‑93 (MQ=255)

                                                                    tcatTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATgg                     >  2:1708832/1‑93 (MQ=255)

                                                                    tcatTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATgg                     <  1:5330911/93‑1 (MQ=255)

                                                                      atTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCg                   >  1:4596831/1‑93 (MQ=255)

                                                                          ccGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTaa               <  1:3717431/93‑1 (MQ=255)

                                                                          ccGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTaa               <  1:837281/93‑1 (MQ=255)

                                                                          ccGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTACTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTaa               <  1:5437681/93‑1 (MQ=255)

                                                                           cGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAAc              <  1:4464449/93‑1 (MQ=255)

                                                                             gtgtTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTa            <  1:1113759/93‑1 (MQ=255)

                                                                              tgtTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTAt           <  1:560616/93‑1 (MQ=255)

                                                                              tgtTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTAt           <  2:6701905/93‑1 (MQ=255)

                                                                               gtTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATc          >  2:6026469/1‑93 (MQ=255)

                                                                               gtTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATc          >  2:3641490/1‑93 (MQ=255)

                                                                                ttGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCg         >  2:1112411/1‑93 (MQ=255)

                                                                                 tGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGc        >  1:6643045/1‑93 (MQ=255)

                                                                                 tGCTGTACCACTGTCGTTAATCGCCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGc        >  2:1262275/1‑93 (MQ=255)

                                                                                   cTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCa      <  1:6486571/93‑1 (MQ=255)

                                                                                      tACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCg   >  1:3463401/1‑93 (MQ=255)

                                                                                       aCCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCgg  <  1:2357026/93‑1 (MQ=255)

                                                                                       aCCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCgg  >  2:2363954/1‑93 (MQ=255)

                                                                                       aCCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCgg  >  2:909077/1‑93 (MQ=255)

ATTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCGCTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCGG  >  NC_000913/2154322‑2154501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGAATTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCGCTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCGGATTC  >  NC_000913/2154319‑2154505

TGAATTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCA                                                                                               >  SRR4302536.4025878/1‑94 (MQ=60)

TGAATTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCA                                                                                               >  SRR4302536.1855771/1‑94 (MQ=60)

TGAATTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCA                                                                                               <  SRR4302536.2989847/94‑1 (MQ=60)

TGAATTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCA                                                                                               >  SRR4302536.1699362/1‑94 (MQ=60)

 GAATTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCAC                                                                                              <  SRR4302536.6596351/94‑1 (MQ=60)

  AATTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACT                                                                                             <  SRR4302536.4439027/94‑1 (MQ=60)

  AATTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACT                                                                                             >  SRR4302536.3237685/1‑94 (MQ=60)

     TGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTC                                                                                          <  SRR4302536.4691306/94‑1 (MQ=60)

      GATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCG                                                                                         >  SRR4302536.2472333/1‑94 (MQ=60)

       ATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGT                                                                                        >  SRR4302536.2634753/1‑94 (MQ=60)

        TGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTT                                                                                       <  SRR4302536.6827992/94‑1 (MQ=60)

        TGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTT                                                                                       <  SRR4302536.2771073/94‑1 (MQ=60)

        TGATGGCTAACGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGCGTTGCTGTACCACTGTCGTT                                                                                       >  SRR4302536.6721467/1‑94 (MQ=60)

          ATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAA                                                                                     <  SRR4302536.5343102/94‑1 (MQ=60)

          ATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAA                                                                                     <  SRR4302536.5938731/94‑1 (MQ=60)

          ATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAA                                                                                     >  SRR4302536.4626563/1‑94 (MQ=60)

             GCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCG                                                                                  <  SRR4302536.2888696/94‑1 (MQ=60)

             GCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCG                                                                                  >  SRR4302536.2935379/1‑94 (MQ=60)

             GCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCG                                                                                  <  SRR4302536.4148124/94‑1 (MQ=60)

             GCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCG                                                                                  <  SRR4302536.4975805/94‑1 (MQ=60)

              TTATCGCGCTGGTAGTCATGATTATCTACGTGTTTTTGCGCAATATTCCGGAGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGG                                                                                 <  SRR4302536.5397431/94‑1 (MQ=60)

              CTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGG                                                                                 >  SRR4302536.1398053/1‑94 (MQ=60)

              CTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGG                                                                                 >  SRR4302536.6310786/1‑94 (MQ=60)

               TATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGC                                                                                >  SRR4302536.2229648/1‑94 (MQ=60)

               TATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGC                                                                                >  SRR4302536.6602179/1‑94 (MQ=60)

               TATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGC                                                                                <  SRR4302536.6460633/94‑1 (MQ=60)

                  CGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACT                                                                             <  SRR4302536.3766457/94‑1 (MQ=60)

                   GCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTT                                                                            <  SRR4302536.2338999/94‑1 (MQ=60)

                   GCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTT                                                                            <  SRR4302536.350928/94‑1 (MQ=60)

                    CGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTT                                                                           >  SRR4302536.1655870/1‑94 (MQ=60)

                     GCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTC                                                                          <  SRR4302536.3598037/94‑1 (MQ=60)

                      CTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGGTCTCCCACTGTCGTTAATCGGCCCTTTCG                                                                         <  SRR4302536.6584410/94‑1 (MQ=60)

                      CTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCG                                                                         >  SRR4302536.4170611/1‑94 (MQ=60)

                       TGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGGACTTTCGG                                                                        >  SRR4302536.5326698/1‑94 (MQ=60)

                       TGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGC                                                                        >  SRR4302536.161886/1‑94 (MQ=60)

                        GGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCG                                                                       <  SRR4302536.2804983/94‑1 (MQ=60)

                        GGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCG                                                                       >  SRR4302536.5436228/1‑94 (MQ=60)

                        GGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCG                                                                       <  SRR4302536.4257997/94‑1 (MQ=60)

                        GGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCCCG                                                                       <  SRR4302536.3573337/94‑1 (MQ=60)

                          TAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGT                                                                     <  SRR4302536.283866/94‑1 (MQ=60)

                          TAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGT                                                                     >  SRR4302536.5978924/1‑94 (MQ=60)

                          TAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGT                                                                     <  SRR4302536.1532520/94‑1 (MQ=60)

                          TAGTCATGATTATCTACCTGTTTTTGCGCAATATACCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACNTTCGCGGT                                                                     >  SRR4302536.5412990/1‑94 (MQ=60)

                            GTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTA                                                                   <  SRR4302536.6372472/94‑1 (MQ=60)

                            GTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTA                                                                   <  SRR4302536.2075014/94‑1 (MQ=60)

                             TCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTAT                                                                  <  SRR4302536.2967971/94‑1 (MQ=60)

                               ATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGG                                                                >  SRR4302536.4171975/1‑94 (MQ=60)

                               ATGATTATCTACCTGTTATTGCGCAATCTTCCGGCGCCCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGG                                                                <  SRR4302536.1116868/94‑1 (MQ=60)

                                TGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGT                                                               >  SRR4302536.6740753/1‑94 (MQ=60)

                                 TATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTG                                                              <  SRR4302536.4851802/94‑1 (MQ=60)

                                 GATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCTGCACTTTCGCGGTTATGGTG                                                              >  SRR4302536.445575/1‑94 (MQ=60)

                                 GATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTG                                                              <  SRR4302536.784656/94‑1 (MQ=60)

                                 GATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTG                                                              <  SRR4302536.5511096/94‑1 (MQ=60)

                                 GATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTG                                                              >  SRR4302536.1741247/1‑94 (MQ=60)

                                   TTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTT                                                            <  SRR4302536.5038187/94‑1 (MQ=60)

                                   TTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTT                                                            >  SRR4302536.3116489/1‑94 (MQ=60)

                                     ATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTC                                                          >  SRR4302536.4360600/1‑94 (MQ=60)

                                     ATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTC                                                          <  SRR4302536.468000/94‑1 (MQ=60)

                                     ATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTC                                                          >  SRR4302536.2259043/1‑94 (MQ=60)

                                     ATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTC                                                          >  SRR4302536.3549441/1‑94 (MQ=60)

                                      TCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCT                                                         <  SRR4302536.6268453/94‑1 (MQ=60)

                                      TCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCT                                                         <  SRR4302536.1490025/94‑1 (MQ=60)

                                      TCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCT                                                         <  SRR4302536.3340400/94‑1 (MQ=60)

                                       CTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTC                                                        >  SRR4302536.6174669/1‑94 (MQ=60)

                                       CTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTC                                                        >  SRR4302536.1257792/1‑94 (MQ=60)

                                         ACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGA                                                      >  SRR4302536.4547048/1‑94 (MQ=60)

                                         ACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGGGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGAGTTTCTCGA                                                      >  SRR4302536.2240751/1‑94 (MQ=60)

                                          CCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGAT                                                     >  SRR4302536.2473936/1‑94 (MQ=60)

                                          CCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGAT                                                     <  SRR4302536.4643175/94‑1 (MQ=60)

                                            TGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTT                                                   <  SRR4302536.5521029/94‑1 (MQ=60)

                                            TGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTT                                                   <  SRR4302536.6924150/94‑1 (MQ=60)

                                            TGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGCGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTT                                                   <  SRR4302536.2540510/94‑1 (MQ=60)

                                             GTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTT                                                  <  SRR4302536.6272767/94‑1 (MQ=60)

                                               TTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTC                                                >  SRR4302536.5968405/1‑94 (MQ=60)

                                               TTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTC                                                <  SRR4302536.3759110/94‑1 (MQ=60)

                                                  TGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAAT                                             >  SRR4302536.3094554/1‑94 (MQ=60)

                                                  TGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAAT                                             <  SRR4302536.2264160/94‑1 (MQ=60)

                                                     GCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAA                                          >  SRR4302536.4478354/1‑94 (MQ=60)

                                                      CAATATTCCGGCGCCCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAAT                                         <  SRR4302536.4996704/94‑1 (MQ=60)

                                                      CAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGGTATGGTGTTTCTCGATTTTTCAATCAAT                                         >  SRR4302536.525685/1‑94 (MQ=60)

                                                      CAATATTCCGGCGAACATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAAT                                         >  SRR4302536.5662423/1‑94 (MQ=60)

                                                       AATATGCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATA                                        <  SRR4302536.1236835/94‑1 (MQ=60)

                                                        ATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAA                                       <  SRR4302536.6526706/94‑1 (MQ=60)

                                                        ATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAA                                       >  SRR4302536.4831797/1‑94 (MQ=60)

                                                         TATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAAC                                      <  SRR4302536.654208/94‑1 (MQ=60)

                                                         TATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAAC                                      >  SRR4302536.3194021/1‑94 (MQ=60)

                                                          ATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACC                                     >  SRR4302536.1783706/1‑94 (MQ=60)

                                                          ATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACC                                     >  SRR4302536.5509020/1‑94 (MQ=60)

                                                           TTCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGGTTCTCGATTTTTCAATCAATAACCT                                    >  SRR4302536.562291/1‑94 (MQ=60)

                                                            TCCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTG                                   <  SRR4302536.720680/94‑1 (MQ=60)

                                                             CCGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGA                                  <  SRR4302536.3357210/94‑1 (MQ=60)

                                                             CCGGCGACCATCATACCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGA                                  <  SRR4302536.6024145/94‑1 (MQ=60)

                                                              CGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGAC                                 >  SRR4302536.2291691/1‑94 (MQ=60)

                                                              CGGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGAC                                 <  SRR4302536.5735620/94‑1 (MQ=60)

                                                               GGCGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACA                                >  SRR4302536.6390563/1‑94 (MQ=60)

                                                                 CGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACT                              >  SRR4302536.5655329/1‑94 (MQ=60)

                                                                 CGACCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACT                              >  SRR4302536.351816/1‑94 (MQ=60)

                                                                    CCATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGAT                           <  SRR4302536.552467/94‑1 (MQ=60)

                                                                    CCATCATTCCCGGTGTTGCTGTAACACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGAT                           >  SRR4302536.4393001/1‑94 (MQ=60)

                                                                     CATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAATCTGACACTGATG                          >  SRR4302536.279685/1‑94 (MQ=60)

                                                                     CATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATG                          >  SRR4302536.3540268/1‑94 (MQ=60)

                                                                      ATCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGG                         >  SRR4302536.3066135/1‑94 (MQ=60)

                                                                       TCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGC                        >  SRR4302536.4354189/1‑94 (MQ=60)

                                                                       TCATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGC                        <  SRR4302536.5490183/94‑1 (MQ=60)

                                                                        CATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACTTGACACTGATGGCG                       <  SRR4302536.6929243/94‑1 (MQ=60)

                                                                        CATTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCG                       >  SRR4302536.4734843/1‑94 (MQ=60)

                                                                          TTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTT                     <  SRR4302536.5776992/94‑1 (MQ=60)

                                                                          TTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTT                     <  SRR4302536.1840176/94‑1 (MQ=60)

                                                                          TTCCCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTT                     <  SRR4302536.6829519/94‑1 (MQ=60)

                                                                             CCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAAC                  <  SRR4302536.861903/94‑1 (MQ=60)

                                                                             CCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAAC                  <  SRR4302536.3828562/94‑1 (MQ=60)

                                                                             CCGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTACTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAAC                  <  SRR4302536.5600295/94‑1 (MQ=60)

                                                                              CGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACT                 >  SRR4302536.6076072/1‑94 (MQ=60)

                                                                              CGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACT                 <  SRR4302536.4598581/94‑1 (MQ=60)

                                                                              CGGTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACT                 <  SRR4302536.2574863/94‑1 (MQ=60)

                                                                                GTGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTAT               <  SRR4302536.1147187/94‑1 (MQ=60)

                                                                                 TGTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATC              <  SRR4302536.574901/94‑1 (MQ=60)

                                                                                  GTTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCG             <  SRR4302536.6302892/94‑1 (MQ=60)

                                                                                   TTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGC            >  SRR4302536.3853750/1‑94 (MQ=60)

                                                                                   TTGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGC            >  SRR4302536.6840569/1‑94 (MQ=60)

                                                                                    TGCTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCC           >  SRR4302536.6404884/1‑94 (MQ=60)

                                                                                      CTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCAC         <  SRR4302536.6680016/94‑1 (MQ=60)

                                                                                      CTGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCAC         >  SRR4302536.887216/1‑94 (MQ=60)

                                                                                       TGTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACC        >  SRR4302536.1309934/1‑94 (MQ=60)

                                                                                        GTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCG       <  SRR4302536.6221010/94‑1 (MQ=60)

                                                                                        GTACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCG       >  SRR4302536.3566608/1‑94 (MQ=60)

                                                                                          ACCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCGGA     <  SRR4302536.2428466/94‑1 (MQ=60)

                                                                                           CCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCGGAT    <  SRR4302536.2843945/94‑1 (MQ=60)

                                                                                           CCACTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCGGAT    >  SRR4302536.1684849/1‑94 (MQ=60)

                                                                                             ACTGTCGTTAATCAGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCGGATTC  >  SRR4302536.3103678/1‑94 (MQ=60)

TGAATTGATGATGGCTATCGCGCTGGTAGTCATGATTATCTACCTGTTTTTGCGCAATATTCCGGCGACCATCATTCCCGGTGTTGCTGTACCGCTGTCGTTAATCGGCACTTTCGCGGTTATGGTGTTTCTCGATTTTTCAATCAATAACCTGACACTGATGGCGTTAACTATCGCCACCGGATTC  >  NC_000913/2154319‑2154505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`