Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,264,802 T→C F180L (TTT→CTT)  yeiQ → putative oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,264,8020TC100.0% 653.5 / NA 201F180L (TTT→CTT) yeiQputative oxidoreductase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (104/97);  total (104/97)

Only 100 of 217 total aligned reads displayed.

CACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGTTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAA  >  NC_000913/2264712‑2264891
                                                                                          |                                                                                         
cACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGctt                                                                                         >  2:5461629/1‑93 (MQ=255)
cACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGctt                                                                                         >  1:3060183/1‑93 (MQ=255)
 aCGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTa                                                                                        <  2:3648376/93‑1 (MQ=255)
 aCGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTa                                                                                        >  1:2505205/1‑93 (MQ=255)
   gATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTAcc                                                                                      >  1:5345912/1‑93 (MQ=255)
    aTCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCg                                                                                     >  2:929467/1‑93 (MQ=255)
     tCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTGGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGt                                                                                    >  2:3566282/1‑93 (MQ=255)
      cTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTg                                                                                   <  2:5412259/93‑1 (MQ=255)
        aCAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGct                                                                                 >  1:1887979/1‑93 (MQ=255)
          aaaCCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGctct                                                                               >  2:3441385/1‑93 (MQ=255)
           aaCCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCtctc                                                                              >  1:6494357/1‑93 (MQ=255)
           aaCCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCtctc                                                                              >  2:786840/1‑93 (MQ=255)
            aCCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTcc                                                                             >  1:2037965/1‑93 (MQ=255)
            aCCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTcc                                                                             >  2:5686146/1‑93 (MQ=255)
            aCCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTcc                                                                             >  1:2609179/1‑93 (MQ=255)
             ccccTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCt                                                                            >  1:3374893/1‑93 (MQ=255)
             ccccTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCt                                                                            <  2:2703445/93‑1 (MQ=255)
              cccTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTg                                                                           >  1:3308199/1‑93 (MQ=255)
                cTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCg                                                                         >  1:6010503/1‑93 (MQ=255)
                  gaagaaCCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGAc                                                                       <  1:238731/93‑1 (MQ=255)
                   aagaaCCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACa                                                                      <  1:4043642/93‑1 (MQ=255)
                    agaaCCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACaa                                                                     >  1:1736303/1‑93 (MQ=255)
                    agaaCCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACaa                                                                     <  2:1919855/93‑1 (MQ=255)
                     gaaCCTCCCTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAat                                                                    <  2:503476/93‑1 (MQ=255)
                      acccTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAata                                                                   <  1:424920/91‑1 (MQ=255)
                       aCCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAatat                                                                  >  2:287364/1‑93 (MQ=255)
                       aCCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAatat                                                                  >  1:2047856/1‑93 (MQ=255)
                        ccTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATAtt                                                                 <  2:2353069/93‑1 (MQ=255)
                         cTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTc                                                                >  2:2214057/1‑93 (MQ=255)
                         cTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTc                                                                >  1:4416495/1‑93 (MQ=255)
                           cccTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTccc                                                              <  1:1581111/91‑1 (MQ=255)
                            aCTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCg                                                             >  2:2745371/1‑93 (MQ=255)
                              tCCGCCCCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGAc                                                           <  1:5933212/93‑1 (MQ=255)
                               ccGCACCGGGTATTCTCGTCGAAGCACTGACACGCCGCCGCGAGCGCGGCCTTAGACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACa                                                          >  1:4170940/1‑93 (MQ=255)
                                 gCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAAt                                                        >  1:3114539/1‑93 (MQ=255)
                                 gCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAAt                                                        >  2:5989357/1‑93 (MQ=255)
                                  cACCGGGTATTCTCGTCGAATCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATg                                                       <  2:1879512/93‑1 (MQ=255)
                                  cACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATg                                                       >  2:4451516/1‑93 (MQ=255)
                                   aCCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATgg                                                      >  2:1619155/1‑93 (MQ=255)
                                    ccGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATggc                                                     >  1:5690333/1‑92 (MQ=255)
                                    ccGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGt                                                     >  1:4547535/1‑93 (MQ=255)
                                      gggTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCa                                                   >  1:542289/1‑93 (MQ=255)
                                      gggTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCa                                                   <  1:3755427/93‑1 (MQ=255)
                                       ggTATTCTCGTCGAAGCACTGAAGCGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCAt                                                  <  1:5547787/93‑1 (MQ=255)
                                       ggTATTCTCGTCGAAGCACTGAACCGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCAt                                                  <  2:6576236/93‑1 (MQ=255)
                                       ggTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCAt                                                  <  2:5384607/93‑1 (MQ=255)
                                           ttCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACACTGGTCATgtgg                                              >  2:6535030/1‑93 (MQ=255)
                                           ttCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATgtgg                                              >  2:683563/1‑93 (MQ=255)
                                            tctcGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATgtggt                                             <  2:2770535/93‑1 (MQ=255)
                                            tctcGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATgtggt                                             >  1:2735952/1‑93 (MQ=255)
                                            tctcGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATgtggt                                             <  1:3599675/93‑1 (MQ=255)
                                            tctcGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATgtggt                                             <  1:429432/93‑1 (MQ=255)
                                             ctcGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATgtggtg                                            >  2:1093945/1‑93 (MQ=255)
                                              tcgtcgAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGa                                           >  1:1778350/1‑93 (MQ=255)
                                              tcgtcgAAGCACGGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGa                                           <  2:1494383/93‑1 (MQ=255)
                                               cgtcgAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGaa                                          >  2:1813080/1‑93 (MQ=255)
                                                gtcgAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGaaa                                         >  1:3677444/1‑93 (MQ=255)
                                                 tcgAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGaaaa                                        <  2:1010202/93‑1 (MQ=255)
                                                   gAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAAc                                      <  1:5245854/93‑1 (MQ=255)
                                                   gAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAAc                                      >  2:3635613/1‑93 (MQ=255)
                                                    aaGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAAcg                                     <  2:2986978/93‑1 (MQ=255)
                                                     aGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAAcgc                                    >  1:6687792/1‑93 (MQ=255)
                                                        aCTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGt                                 >  1:6195960/1‑93 (MQ=255)
                                                          tGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGc                               >  1:4628672/1‑93 (MQ=255)
                                                             aaCGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTgg                            <  2:6293706/93‑1 (MQ=255)
                                                              aCGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTggg                           >  2:4801716/1‑93 (MQ=255)
                                                              aCGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTggg                           <  1:1128037/93‑1 (MQ=255)
                                                                gccgccGTGAGCGCGGCCTTACACCGCTTGCCGTGCTCTCCTGCGACCATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGaa                         <  1:6263373/93‑1 (MQ=255)
                                                                  cgccgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATg                       >  1:2319346/1‑93 (MQ=255)
                                                                   gccgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATgg                      >  2:2318545/1‑93 (MQ=255)
                                                                    ccgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGc                     >  2:5886415/1‑93 (MQ=255)
                                                                    ccgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGc                     <  1:860391/93‑1 (MQ=255)
                                                                    ccgGGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGc                     <  1:5383737/93‑1 (MQ=255)
                                                                     cgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCa                    <  2:6153578/93‑1 (MQ=255)
                                                                     cgTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCa                    <  1:3936301/93‑1 (MQ=255)
                                                                      gTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGCTGAAAAACGCGGTGCTGGGAATGGCAg                   >  1:5171071/1‑93 (MQ=255)
                                                                       tGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGa                  <  1:1494031/93‑1 (MQ=255)
                                                                       tGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGa                  <  2:3849148/93‑1 (MQ=255)
                                                                        gAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGaa                 <  2:1362372/93‑1 (MQ=255)
                                                                         aGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGaaa                <  1:931735/93‑1 (MQ=255)
                                                                         aGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGaaa                <  2:3274710/93‑1 (MQ=255)
                                                                         aGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGaaa                >  1:3719476/1‑93 (MQ=255)
                                                                          gcgcGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGaaaa               <  1:4313919/93‑1 (MQ=255)
                                                                          gcgcGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGaaaa               <  2:5603052/93‑1 (MQ=255)
                                                                            gcgGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAAc             <  2:6638038/93‑1 (MQ=255)
                                                                              ggCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGt           >  2:2053044/1‑93 (MQ=255)
                                                                              ggCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGt           <  2:5780458/93‑1 (MQ=255)
                                                                              ggCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGt           <  1:450411/93‑1 (MQ=255)
                                                                              ggCCTTACACCGCTTACCGTGCTCTCCTGCGAAAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGt           <  2:4144718/93‑1 (MQ=255)
                                                                               gCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGtt          <  2:4741507/93‑1 (MQ=255)
                                                                               gCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGtt          >  1:6398459/1‑93 (MQ=255)
                                                                                ccTTACACCGCTTGCCGTGCTCTACTGCGACAATATTCCCGACAATAGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTc         <  1:5299217/93‑1 (MQ=255)
                                                                                ccTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTc         <  1:2975787/93‑1 (MQ=255)
                                                                                ccTGACACCGCTTACCGTGCGCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTc         <  2:6115424/93‑1 (MQ=255)
                                                                                  ttACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGc       >  2:5152722/1‑93 (MQ=255)
                                                                                  ttACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGc       >  1:4954541/1‑93 (MQ=255)
                                                                                    acacCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCa     >  2:459451/1‑93 (MQ=255)
                                                                                    acacCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCa     <  2:3181083/93‑1 (MQ=255)
                                                                                    acacCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCa     <  2:3308199/93‑1 (MQ=255)
                                                                                      acCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGa   >  1:2156765/1‑93 (MQ=255)
                                                                                          |                                                                                         
CACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGTTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAA  >  NC_000913/2264712‑2264891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATTCACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGTTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAACTC  >  NC_000913/2264709‑2264894
                                                                                             |                                                                                            
ATTCACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGC                                                                                              >  SRR4302536.5084545/1‑94 (MQ=60)
  TCACGATCTACAACCCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTT                                                                                            <  SRR4302536.1564688/94‑1 (MQ=60)
  TCACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTT                                                                                            >  SRR4302536.3149978/1‑94 (MQ=60)
   CACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTA                                                                                           <  SRR4302536.2001217/94‑1 (MQ=60)
   CACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTA                                                                                           >  SRR4302536.2580748/1‑94 (MQ=60)
    ACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTAC                                                                                          <  SRR4302536.4438306/94‑1 (MQ=60)
    ACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTAC                                                                                          <  SRR4302536.2190993/94‑1 (MQ=60)
     CGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACC                                                                                         >  SRR4302536.5505557/1‑94 (MQ=60)
       ATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGCAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGT                                                                                       >  SRR4302536.6431184/1‑94 (MQ=60)
          TACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCT                                                                                    >  SRR4302536.1944769/1‑94 (MQ=60)
            CAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCT                                                                                  <  SRR4302536.1445312/94‑1 (MQ=60)
            CAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCT                                                                                  >  SRR4302536.2693681/1‑94 (MQ=60)
             AAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTC                                                                                 >  SRR4302536.6687981/1‑94 (MQ=60)
              AACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCC                                                                                >  SRR4302536.2687478/1‑94 (MQ=60)
              AACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCC                                                                                >  SRR4302536.2099346/1‑94 (MQ=60)
               ACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCT                                                                               >  SRR4302536.3870096/1‑94 (MQ=60)
               ACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCT                                                                               >  SRR4302536.3475158/1‑94 (MQ=60)
               ACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCT                                                                               >  SRR4302536.4418363/1‑94 (MQ=60)
               ACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCT                                                                               <  SRR4302536.6834036/94‑1 (MQ=60)
                CCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTG                                                                              >  SRR4302536.3405884/1‑94 (MQ=60)
                CCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTG                                                                              <  SRR4302536.3165505/94‑1 (MQ=60)
                CCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTG                                                                              <  SRR4302536.1974809/94‑1 (MQ=60)
                 CCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGC                                                                             >  SRR4302536.3752134/1‑94 (MQ=60)
                 CCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCATTACACCGCTTACCGTGCTCTCCTGC                                                                             >  SRR4302536.5548491/1‑94 (MQ=60)
                  CCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCG                                                                            >  SRR4302536.6189698/1‑94 (MQ=60)
                  CCTGAAGAACCTCACTCCGCACCGGGCATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCG                                                                            >  SRR4302536.4657364/1‑94 (MQ=60)
                   CTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGA                                                                           >  SRR4302536.4261728/1‑94 (MQ=60)
                    TGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGAC                                                                          >  SRR4302536.2646273/1‑94 (MQ=60)
                     GAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACA                                                                         <  SRR4302536.245074/94‑1 (MQ=60)
                      AAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAA                                                                        >  SRR4302536.4088635/1‑94 (MQ=60)
                      AAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAA                                                                        <  SRR4302536.4163513/94‑1 (MQ=60)
                      AAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAA                                                                        >  SRR4302536.1786377/1‑94 (MQ=60)
                      AAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAA                                                                        >  SRR4302536.6008235/1‑94 (MQ=60)
                         ACCCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATAT                                                                     <  SRR4302536.436110/94‑1 (MQ=60)
                         AACCTCACTCCGCATCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATAT                                                                     <  SRR4302536.5532999/94‑1 (MQ=60)
                         AACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATAT                                                                     >  SRR4302536.2109526/1‑94 (MQ=60)
                           CCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTC                                                                   >  SRR4302536.4548689/1‑94 (MQ=60)
                           CCTCACTCCGCACCGGGAATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGCGCTCTCCTGCGACAATATTC                                                                   >  SRR4302536.1920058/1‑94 (MQ=60)
                              CCCTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCG                                                                <  SRR4302536.1627418/94‑1 (MQ=60)
                              CACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCG                                                                <  SRR4302536.5489236/94‑1 (MQ=60)
                              CACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCG                                                                >  SRR4302536.6626537/1‑94 (MQ=60)
                                CTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGAC                                                              >  SRR4302536.6690348/1‑94 (MQ=60)
                                CTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGAC                                                              >  SRR4302536.1733918/1‑94 (MQ=60)
                                 TCCGCCCCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACA                                                             <  SRR4302536.6109933/94‑1 (MQ=60)
                                 TCCGCACCGGGTATTCTCGTCGAAGCACTGACACGCCGCCGCGAGCGCGGCCTTAGACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACA                                                             >  SRR4302536.4294853/1‑94 (MQ=60)
                                   CGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAAT                                                           >  SRR4302536.3205504/1‑94 (MQ=60)
                                   CGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAAT                                                           <  SRR4302536.6184658/94‑1 (MQ=60)
                                      ACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGT                                                        >  SRR4302536.4683915/1‑94 (MQ=60)
                                      ACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGC                                                        >  SRR4302536.5859528/1‑94 (MQ=60)
                                       CCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTC                                                       >  SRR4302536.5945969/1‑94 (MQ=60)
                                       CCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTC                                                       <  SRR4302536.4295983/94‑1 (MQ=60)
                                        CGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCA                                                      <  SRR4302536.2295572/94‑1 (MQ=60)
                                        CGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCA                                                      >  SRR4302536.4080810/1‑94 (MQ=60)
                                        CGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCA                                                      >  SRR4302536.556119/1‑94 (MQ=60)
                                        CGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCA                                                      >  SRR4302536.2108640/1‑94 (MQ=60)
                                         GGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCAT                                                     <  SRR4302536.5195276/94‑1 (MQ=60)
                                         GGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCAT                                                     <  SRR4302536.3867616/94‑1 (MQ=60)
                                          GGTATTCTCGTCGAAGCACTGAAGCGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATG                                                    <  SRR4302536.5713077/94‑1 (MQ=60)
                                             ATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGG                                                 <  SRR4302536.534580/94‑1 (MQ=60)
                                              TTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGT                                                >  SRR4302536.2817486/1‑94 (MQ=60)
                                               TCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTG                                               <  SRR4302536.3707312/94‑1 (MQ=60)
                                               TCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTG                                               <  SRR4302536.440732/94‑1 (MQ=60)
                                                CTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGA                                              >  SRR4302536.4519876/1‑94 (MQ=60)
                                                CTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGA                                              >  SRR4302536.1832131/1‑94 (MQ=60)
                                                CTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGA                                              <  SRR4302536.864404/94‑1 (MQ=60)
                                                CTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGA                                              >  SRR4302536.4755613/1‑94 (MQ=60)
                                                  CGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAA                                            >  SRR4302536.3787381/1‑94 (MQ=60)
                                                     CGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAAC                                         <  SRR4302536.3846360/94‑1 (MQ=60)
                                                      GAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTTCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACG                                        <  SRR4302536.5784822/94‑1 (MQ=60)
                                                      GAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACG                                        <  SRR4302536.5402178/94‑1 (MQ=60)
                                                       AAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGC                                       >  SRR4302536.6886415/1‑94 (MQ=60)
                                                         GCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGG                                     >  SRR4302536.3069311/1‑94 (MQ=60)
                                                         GCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGG                                     >  SRR4302536.6547845/1‑94 (MQ=60)
                                                          GACTGAAACGCCGCCGTGAGCGCGGGCTTACACCGCTTACCGGGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGG                                    >  SRR4302536.3544679/1‑94 (MQ=60)
                                                          CACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGT                                    >  SRR4302536.6380512/1‑94 (MQ=60)
                                                            CTGAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGC                                  >  SRR4302536.4767754/1‑94 (MQ=60)
                                                              GAAACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTG                                >  SRR4302536.1600573/1‑94 (MQ=60)
                                                                 ACGCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGA                             <  SRR4302536.1161947/94‑1 (MQ=60)
                                                                  CGCGGCCGTGAGCGCGGCCCTACGCCGCTTGCCGTGCTCTCCTGTCGCAATATTCCCGACAATGGTCATGTGGTGAAGAACGCGGTGCcgttaa                            <  SRR4302536.3609595/94‑7 (MQ=44)
                                                                   gccgccggggggcCGGCCTTACGCCGCTTACCGTGCTCTCCTTCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAAT                           <  SRR4302536.2534583/81‑1 (MQ=60)
                                                                   GCCGCCGTGAGCGCGGCCTTACACCGCTTGCCGTGCTCTCCTGCGACCATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAAT                           <  SRR4302536.6449968/94‑1 (MQ=60)
                                                                   GCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAAT                           <  SRR4302536.1029039/94‑1 (MQ=60)
                                                                   GCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAAT                           <  SRR4302536.5436227/94‑1 (MQ=60)
                                                                   GCCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAAT                           >  SRR4302536.3692867/1‑94 (MQ=60)
                                                                    CCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATG                          >  SRR4302536.2389731/1‑94 (MQ=60)
                                                                    CCGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATG                          <  SRR4302536.3409662/94‑1 (MQ=60)
                                                                     CGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGG                         >  SRR4302536.2428091/1‑94 (MQ=60)
                                                                     CGCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGG                         >  SRR4302536.3815878/1‑94 (MQ=60)
                                                                      GCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGC                        <  SRR4302536.4612018/94‑1 (MQ=60)
                                                                      GCCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGGGCTGGGAATGGC                        >  SRR4302536.6286254/1‑94 (MQ=60)
                                                                       CCGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCA                       <  SRR4302536.885685/94‑1 (MQ=60)
                                                                       CCGGGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCA                       <  SRR4302536.5544419/94‑1 (MQ=60)
                                                                        CGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTGCCGACAATGGTGATGTGGTGAAAAACGCGGTGCTGGGAGTGGCAG                      >  SRR4302536.5887653/1‑94 (MQ=60)
                                                                        CGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAG                      <  SRR4302536.3220736/94‑1 (MQ=60)
                                                                        CGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAG                      <  SRR4302536.4053249/94‑1 (MQ=60)
                                                                        CGTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGCTGAAAAACGCGGTGCTGGGAATGGCAG                      >  SRR4302536.5325344/1‑94 (MQ=60)
                                                                         GTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGCATGGCAGA                     >  SRR4302536.3467473/1‑94 (MQ=60)
                                                                         GTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGA                     <  SRR4302536.913866/94‑1 (MQ=60)
                                                                         GTGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGA                     >  SRR4302536.5016238/1‑94 (MQ=60)
                                                                          TGAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAA                    <  SRR4302536.1538148/94‑1 (MQ=60)
                                                                           GAGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAA                   >  SRR4302536.3830662/1‑94 (MQ=60)
                                                                            AGCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAA                  <  SRR4302536.959180/94‑1 (MQ=60)
                                                                             GCGCGGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAA                 <  SRR4302536.4443048/94‑1 (MQ=60)
                                                                                 GGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTT             <  SRR4302536.462244/94‑1 (MQ=60)
                                                                                 GGCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTT             >  SRR4302536.6589407/1‑94 (MQ=60)
                                                                                  GCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTC            <  SRR4302536.5410401/94‑1 (MQ=60)
                                                                                  GCCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTC            >  SRR4302536.2848631/1‑94 (MQ=60)
                                                                                   CCTTACACCGCTTGCCGTGCTCTACTGCGACAATATTCCCGACAATAGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCG           <  SRR4302536.5457249/94‑1 (MQ=60)
                                                                                   CCTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCG           <  SRR4302536.3063384/94‑1 (MQ=60)
                                                                                    CTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGC          <  SRR4302536.1828180/94‑1 (MQ=60)
                                                                                    CTTACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGC          >  SRR4302536.5103395/1‑94 (MQ=60)
                                                                                       ACACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAG       <  SRR4302536.4621132/94‑1 (MQ=60)
                                                                                        CACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGA      >  SRR4302536.2630810/1‑94 (MQ=60)
                                                                                        CACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGA      >  SRR4302536.2221604/1‑94 (MQ=60)
                                                                                        CACCGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGA      <  SRR4302536.566840/94‑1 (MQ=60)
                                                                                           CGCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAACT   <  SRR4302536.2380897/94‑1 (MQ=60)
                                                                                            GCTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAACTC  <  SRR4302536.636578/94‑1 (MQ=60)
                                                                                             |                                                                                            
ATTCACGATCTACAAACCCCTGAAGAACCTCACTCCGCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCGGCCTTACACCGTTTACCGTGCTCTCCTGCGACAATATTCCCGACAATGGTCATGTGGTGAAAAACGCGGTGCTGGGAATGGCAGAAAAACGTTCGCCAGAACTC  >  NC_000913/2264709‑2264894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑