Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1475 |
266.7 |
13469680 |
98.2% |
13227225 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,265,885 |
A→G |
S13G (AGC→GGC) |
yeiR → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,265,885 | 0 | A | G | 99.5%
| 649.1
/ ‑6.8
| 201 | S13G (AGC→GGC) | yeiR | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (104/96); total (104/97) |
| Fisher's exact test for biased strand distribution p-value = 4.83e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 229 total aligned reads displayed.
TTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCAGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGTC > NC_000913/2265795‑2265974
|
ttttttAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCggcggc < 2:6247310/93‑1 (MQ=255)
ttttttAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCggcggc > 1:493180/1‑93 (MQ=255)
tttttAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGgcggcg > 1:4250933/1‑93 (MQ=255)
aGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGaaa > 2:4259688/1‑93 (MQ=255)
gCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGaaaa > 2:3655400/1‑93 (MQ=255)
gCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGaaaa > 2:3085938/1‑93 (MQ=255)
gCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGaaaa < 2:5484100/93‑1 (MQ=255)
gCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGCCGGCGGGaaaa > 2:1387671/1‑93 (MQ=255)
cAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAAcc > 2:3245240/1‑93 (MQ=255)
cAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAAcc > 1:4914761/1‑93 (MQ=255)
aGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCa > 2:2581634/1‑93 (MQ=255)
gATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACg > 1:1021003/1‑93 (MQ=255)
gATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGCTTTCTCGGCGGAGGGCAAcccccc > 1:805255/1‑90 (MQ=255)
aTTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCCCCGGTTTTCTCGGCGGCGGGAAAACCACGt < 1:5277682/93‑1 (MQ=255)
ttAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTc > 2:5264839/1‑93 (MQ=255)
tAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCg > 2:6175958/1‑93 (MQ=255)
tAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCg < 2:5309954/93‑1 (MQ=255)
tAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCg < 2:2020877/93‑1 (MQ=255)
aaCGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGa > 2:4493942/1‑93 (MQ=255)
aCGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAt > 1:1437705/1‑93 (MQ=255)
aCGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAt > 1:4669944/1‑93 (MQ=255)
gCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAttc > 1:2314239/1‑93 (MQ=255)
gCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAttc > 1:5484528/1‑93 (MQ=255)
cAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAttcttc > 2:1726824/1‑93 (MQ=255)
cAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAttcttc > 1:86199/1‑93 (MQ=255)
cAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAttcttc > 1:3980951/1‑93 (MQ=255)
aGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCa < 1:318261/93‑1 (MQ=255)
gTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCAt > 2:176609/1‑93 (MQ=255)
ttAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATc < 2:6020736/93‑1 (MQ=255)
ttAACTAACCGGAGTATTGCGGAGCCGTTGTGACAGGGACCAACCTCATCACCGTTTTTCTGGGGGGCGGGAAAACCACGTCGATTCTTCATc < 2:1269388/93‑1 (MQ=255)
aCTTCCCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGt < 2:3686822/93‑1 (MQ=255)
aCTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGt < 1:1353263/93‑1 (MQ=255)
aCTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGt < 2:436101/93‑1 (MQ=255)
cTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGtt > 2:2047138/1‑93 (MQ=255)
cTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGtt > 2:4828688/1‑93 (MQ=255)
ttACCAGAGAATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTa > 1:6092786/1‑93 (MQ=255)
tACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCCCCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAg < 1:499240/93‑1 (MQ=255)
tACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAg < 1:6162344/93‑1 (MQ=255)
tACCAGAGTATGGCGGAGCCGTTGTGACCAGGACCACCCTCATCCCGGGTTTTCTGGGCGGCGGAAAAACCACGTCGATTCTTCATCTGTTAg < 2:4560028/93‑1 (MQ=255)
ccAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGcc < 1:2723630/93‑1 (MQ=255)
ccAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGcc > 1:6111203/1‑93 (MQ=255)
cAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGccc > 2:240119/1‑93 (MQ=255)
agagTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCa > 2:5926899/1‑93 (MQ=255)
agagTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCa > 1:1453319/1‑93 (MQ=255)
gagTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCAt < 2:5022578/93‑1 (MQ=255)
agTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATa < 1:2246812/93‑1 (MQ=255)
ttGCGGAGCCGTTGTGACCAGGACCACCCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGa < 2:3744737/93‑1 (MQ=255)
ttGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGa < 1:2846435/93‑1 (MQ=255)
ttGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGa < 1:6370309/93‑1 (MQ=255)
ggAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATccc < 2:2965245/93‑1 (MQ=255)
ggAGCCGTTCTGACCAGGACCACCCTCATCACCGTTTTTCGCGGCGTGAGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATccc < 1:3745667/93‑1 (MQ=255)
gCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAAc > 2:3164068/1‑93 (MQ=255)
ccGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACg < 2:2289554/93‑1 (MQ=255)
cGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGa < 1:3020643/93‑1 (MQ=255)
gTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGaa > 1:2210004/1‑93 (MQ=255)
gtgACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGaaaaa > 1:574095/1‑93 (MQ=255)
atgACAAGGCCCAACCTCACCACCGCTTGTCTCTGCGGCGGGAAAACCACGTAGATGCTTCATCTGTTAGCCCATAAAGATCCCAACGaaaaa < 1:1093455/92‑1 (MQ=255)
tgACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAAt > 2:4630043/1‑93 (MQ=255)
tgACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAAt < 1:5203366/93‑1 (MQ=255)
gACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATg < 2:3434967/93‑1 (MQ=255)
aCCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATgg > 1:330256/1‑93 (MQ=255)
aCCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATgg < 1:6670463/93‑1 (MQ=255)
cAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGc > 2:3928808/1‑93 (MQ=255)
cAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGc < 1:5823536/93‑1 (MQ=255)
aGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCg < 2:1536263/93‑1 (MQ=255)
ggACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCgg > 2:6555197/1‑93 (MQ=255)
ggACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCgg > 2:238844/1‑93 (MQ=255)
ggACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCgg > 2:5850378/1‑93 (MQ=255)
gcccAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGt < 1:1568992/91‑1 (MQ=255)
ccACCCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTAc < 1:4736391/93‑1 (MQ=255)
cAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACt < 1:1601484/93‑1 (MQ=255)
aCCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTgg > 1:2551626/1‑93 (MQ=255)
aCCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTgg > 1:627033/1‑93 (MQ=255)
ccTCATCACCGGTTTTCTCGGCGGCGGGAAACCCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGt < 1:3543309/93‑1 (MQ=255)
cTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGtt > 2:6615282/1‑93 (MQ=255)
cTCATCACCGGTTTTCTCGGCGGCGGAAAACCCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGtt < 2:42543/93‑1 (MQ=255)
tcatcaCCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTa > 2:5758314/1‑93 (MQ=255)
atcaCCGTTTTGCTCGGCGGCGGAAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAAt < 1:3410470/93‑1 (MQ=255)
atcaCCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAAt < 1:3327183/93‑1 (MQ=255)
atcaCCGGTTTCCTCGTCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAAt < 1:6704045/93‑1 (MQ=255)
caCCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGa < 1:1068475/93‑1 (MQ=255)
aCCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGaa > 1:437278/1‑93 (MQ=255)
aCCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGaa > 1:1925018/1‑93 (MQ=255)
aCCGGTATTCTCGGCGCCGGGAAAGCCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGaa < 1:6022363/93‑1 (MQ=255)
ccGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAAt < 1:2687237/93‑1 (MQ=255)
cGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAAtt < 1:3085938/93‑1 (MQ=255)
ggTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAAttt > 1:5037622/1‑93 (MQ=255)
gcttttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAAttt < 1:3661152/91‑1 (MQ=255)
gTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTg > 2:6346085/1‑93 (MQ=255)
ttttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTgg > 2:4883556/1‑93 (MQ=255)
ttttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTgg > 2:4913565/1‑93 (MQ=255)
ttttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTgg > 1:3100819/1‑93 (MQ=255)
tttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTggg < 2:649665/93‑1 (MQ=255)
ttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTgggg < 2:2750572/93‑1 (MQ=255)
ttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTgggg < 1:4874639/93‑1 (MQ=255)
ttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTgggg > 1:4018627/1‑93 (MQ=255)
tctcGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGa < 1:6297072/93‑1 (MQ=255)
tctcGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGa < 1:5119628/93‑1 (MQ=255)
cggcggcggGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGt < 1:1283257/93‑1 (MQ=255)
ggcggcGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGTc < 1:1755584/93‑1 (MQ=255)
|
TTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCAGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGTC > NC_000913/2265795‑2265974
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCTTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCAGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAAGTCGGAA > NC_000913/2265792‑2265978
|
GCCTTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCG < SRR4302536.347781/94‑1 (MQ=60)
GCCTTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCG < SRR4302536.4533436/94‑1 (MQ=60)
GCCTTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCG > SRR4302536.597332/1‑94 (MQ=60)
GCCTTTTTTAGCAAGGATTAATGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCG < SRR4302536.688930/94‑1 (MQ=60)
CCTTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGG < SRR4302536.3328825/94‑1 (MQ=60)
CCTTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGG > SRR4302536.1709805/1‑94 (MQ=60)
CCTTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCCGTTTT‑CTCGGCGG > SRR4302536.2625485/1‑94 (MQ=60)
CTTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGC > SRR4302536.505939/1‑94 (MQ=60)
TTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCG > SRR4302536.4377570/1‑94 (MQ=60)
TTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCG > SRR4302536.5572937/1‑94 (MQ=60)
TTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAA < SRR4302536.1093207/94‑1 (MQ=60)
TAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAA < SRR4302536.5063972/94‑1 (MQ=60)
CCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACC > SRR4302536.5062478/1‑94 (MQ=60)
CCAGGATTAACGCTCAGGTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCGTCACCGGTTTT‑CTCCGCGGCGGGAAAACC > SRR4302536.6794839/1‑94 (MQ=60)
CAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGGAAACTA > SRR4302536.1691033/1‑94 (MQ=60)
GGATTAACGCTCAGTTAACTTCCCAGAGTATTGCGGAGCCGTTGTGCCCAGGACCACCCTCATCCCCGGTTTT‑CTCGGCGGCGGGAAAACCACG < SRR4302536.5076460/94‑1 (MQ=60)
GGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACG > SRR4302536.1051229/1‑94 (MQ=60)
GGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACG > SRR4302536.4131858/1‑94 (MQ=60)
GATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGT < SRR4302536.5162047/94‑1 (MQ=60)
ATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCCCCGGTTTT‑CTCGGCGGCGGGAAAACCACGTC < SRR4302536.5434970/94‑1 (MQ=60)
ATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTC > SRR4302536.6811276/1‑94 (MQ=60)
ATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTC > SRR4302536.2038071/1‑94 (MQ=60)
TTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCTTTGTGACCAGGCCCACCCTCATCCCCGTTTTT‑CTCGGCGGCGGGAAAACCACGTCG < SRR4302536.1280842/94‑1 (MQ=60)
TTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGGAAACCACGGCG > SRR4302536.1630534/1‑94 (MQ=60)
AACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGAT > SRR4302536.1480349/1‑94 (MQ=60)
AACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGAT > SRR4302536.4810359/1‑94 (MQ=60)
AACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGAT > SRR4302536.5444649/1‑94 (MQ=60)
CGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTC > SRR4302536.5648268/1‑94 (MQ=60)
CGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTC > SRR4302536.2384475/1‑94 (MQ=60)
GCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCT > SRR4302536.149110/1‑94 (MQ=60)
CTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTT > SRR4302536.1327423/1‑94 (MQ=60)
CTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTT > SRR4302536.3344206/1‑94 (MQ=60)
CTCAGTTAACTTACCAGAGTATGGCGGAGCCGTGGTGACCAGGACCAACCTCATCCCCGGTTTT‑CTCGGCGGCGGAAAAACCACGTCGATTCTT < SRR4302536.2438017/94‑1 (MQ=60)
TCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTC > SRR4302536.4099134/1‑94 (MQ=60)
TCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTC > SRR4302536.88505/1‑94 (MQ=60)
AGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCACCCCAACCACCGGTTTT‑CCCGGCGGCGGGAAAACCACGTCGATTCTTCAT < SRR4302536.2655469/94‑1 (MQ=60)
AGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCAT < SRR4302536.5061912/94‑1 (MQ=60)
AGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCAT < SRR4302536.326693/94‑1 (MQ=60)
GTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGGGGCGGGAAAACCACGTCGATTCTTCATC < SRR4302536.1379388/94‑1 (MQ=60)
TACCTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGCCCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTG < SRR4302536.4172183/94‑1 (MQ=60)
AACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGT < SRR4302536.2281194/94‑1 (MQ=60)
AACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCGGT > SRR4302536.5029647/1‑94 (MQ=60)
ACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTT > SRR4302536.6892719/1‑94 (MQ=60)
ACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTT < SRR4302536.1393604/94‑1 (MQ=60)
ACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTT > SRR4302536.5183815/1‑94 (MQ=60)
CTTACCAGAGAATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTA > SRR4302536.6274472/1‑94 (MQ=60)
TTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAG < SRR4302536.2642257/94‑1 (MQ=60)
TTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAG < SRR4302536.6466012/94‑1 (MQ=60)
TTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAG > SRR4302536.2355817/1‑94 (MQ=60)
TACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCCCCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGC < SRR4302536.512120/94‑1 (MQ=60)
TACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGC > SRR4302536.4878634/1‑94 (MQ=60)
TACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGC < SRR4302536.6345905/94‑1 (MQ=60)
ACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCC > SRR4302536.6293370/1‑94 (MQ=60)
CCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCC < SRR4302536.2804850/94‑1 (MQ=60)
CAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCA > SRR4302536.1496364/1‑94 (MQ=60)
CAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCA < SRR4302536.3717374/94‑1 (MQ=60)
AGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCAT > SRR4302536.3195929/1‑94 (MQ=60)
AGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAA < SRR4302536.2314824/94‑1 (MQ=60)
GTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAA < SRR4302536.5306041/94‑1 (MQ=60)
GTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAA < SRR4302536.524773/94‑1 (MQ=60)
GTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAA > SRR4302536.5907224/1‑94 (MQ=60)
TATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAG > SRR4302536.3241463/1‑94 (MQ=60)
TATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAG < SRR4302536.2776139/94‑1 (MQ=60)
ATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGA > SRR4302536.3838360/1‑94 (MQ=60)
TTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGAT < SRR4302536.6560152/94‑1 (MQ=60)
TTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGAT < SRR4302536.2930612/94‑1 (MQ=60)
TGGCGGAGCCGTTGTGACCAGGACAAACCTCACCCCCGGTTTG‑CTCGGCGCCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGAT < SRR4302536.6065437/94‑1 (MQ=60)
GGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGCCGATTCTTCATCTGTTAGCCCATAAAGATCCCA > SRR4302536.2494058/1‑94 (MQ=60)
GGAGCCGTTCTGACCAGGACCACCCTCATCACCGTTTTT‑CGCGGCGTGAGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCA < SRR4302536.3857634/94‑1 (MQ=60)
GAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAA > SRR4302536.1126078/1‑94 (MQ=60)
AGCCGTTGTGACCAGGACCAACTTCATCACCGGTTTT‑CTCGGCAGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAAC < SRR4302536.6281176/94‑1 (MQ=60)
AGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAAC < SRR4302536.6485374/94‑1 (MQ=60)
AGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAAC > SRR4302536.4528899/1‑94 (MQ=60)
GCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACG < SRR4302536.5411378/94‑1 (MQ=60)
CGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAA < SRR4302536.280216/94‑1 (MQ=60)
CGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAA < SRR4302536.3109402/94‑1 (MQ=60)
CGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAA > SRR4302536.2276745/1‑94 (MQ=60)
TTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAA > SRR4302536.5986430/1‑94 (MQ=60)
TGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA > SRR4302536.588677/1‑94 (MQ=60)
atgacaaggcCCAACCTCACCACCGCTTGT‑CTCTGCGGCGGGAAAACCACGTAGATGCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑T < SRR4302536.1126267/84‑1 (MQ=58)
TGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TG < SRR4302536.5358490/94‑1 (MQ=60)
TGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TG < SRR4302536.4497703/94‑1 (MQ=60)
GACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGG > SRR4302536.702295/1‑94 (MQ=60)
GACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGG < SRR4302536.5140222/94‑1 (MQ=60)
GACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGG > SRR4302536.311799/1‑94 (MQ=60)
GACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGG > SRR4302536.339023/1‑94 (MQ=60)
ACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGG < SRR4302536.6868672/94‑1 (MQ=60)
CAGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCG < SRR4302536.5997034/94‑1 (MQ=60)
AGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGG > SRR4302536.6243481/1‑94 (MQ=60)
AGGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGAGG > SRR4302536.2012129/1‑94 (MQ=60)
GGACCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGT < SRR4302536.6346624/94‑1 (MQ=60)
GCCCAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTA < SRR4302536.1615017/94‑1 (MQ=60)
CCACCCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACT < SRR4302536.4878928/94‑1 (MQ=60)
CACCCTCATCCCGGGTTTT‑CTCGGCGGCGGAAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTG < SRR4302536.3603423/94‑1 (MQ=60)
CAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTG < SRR4302536.3186180/94‑1 (MQ=60)
CAACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTG < SRR4302536.1648225/94‑1 (MQ=60)
AACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGG > SRR4302536.185678/1‑94 (MQ=60)
AACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGG > SRR4302536.1319031/1‑94 (MQ=60)
AACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGG > SRR4302536.645625/1‑94 (MQ=60)
AACCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGG > SRR4302536.2628457/1‑94 (MQ=60)
CCTCATCACCGGTTTT‑CTCGGCGGCGGGAAACCCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTT < SRR4302536.3649254/94‑1 (MQ=60)
CCTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTT > SRR4302536.6326973/1‑94 (MQ=60)
CTCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTA < SRR4302536.3086394/94‑1 (MQ=60)
TCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAA > SRR4302536.3463104/1‑94 (MQ=60)
TCATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAA > SRR4302536.2947616/1‑94 (MQ=60)
ATCACCGTTTTG‑CTCGGCGGCGGAAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATG < SRR4302536.3511926/94‑1 (MQ=60)
ATCACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATG < SRR4302536.3425633/94‑1 (MQ=60)
ATCACCGGTTTC‑CTCGTCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATG < SRR4302536.6903137/94‑1 (MQ=60)
CACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAA < SRR4302536.3421893/94‑1 (MQ=60)
CACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAA < SRR4302536.1100421/94‑1 (MQ=60)
CACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAA < SRR4302536.1605694/94‑1 (MQ=60)
CACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAA > SRR4302536.1982937/1‑94 (MQ=60)
CACCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAA > SRR4302536.448762/1‑94 (MQ=60)
ACCGGTATT‑CTCGGCGCCGGGAAAGCCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAAT < SRR4302536.6201927/94‑1 (MQ=60)
CCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATT < SRR4302536.2767483/94‑1 (MQ=60)
CCGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACAGGTTAATGAATT > SRR4302536.881150/1‑94 (MQ=60)
CGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTT < SRR4302536.3176198/94‑1 (MQ=60)
CGGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTT > SRR4302536.5188637/1‑94 (MQ=60)
GGTTTTCCTCGGCGGGGGAAAAACCACGTCGATTCTTCATCTGTGAGCCCATAAAGA‑CCCAAAGAAAAAGTGGGCGGTACGGTTTAATGAATTT < SRR4302536.3808593/94‑1 (MQ=34)
GGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTG > SRR4302536.6068758/1‑94 (MQ=60)
GGTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTG < SRR4302536.3872292/94‑1 (MQ=60)
GCTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTG < SRR4302536.3770597/94‑1 (MQ=60)
GTTTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGG > SRR4302536.3191345/1‑94 (MQ=60)
TTT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGG > SRR4302536.4137859/1‑94 (MQ=60)
TTT‑CTCGGCGGCGGAAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGG < SRR4302536.3578992/94‑1 (MQ=60)
TT‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGA < SRR4302536.5021279/94‑1 (MQ=60)
T‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAA < SRR4302536.452980/94‑1 (MQ=60)
T‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAA < SRR4302536.6484658/94‑1 (MQ=60)
T‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAA < SRR4302536.5272602/94‑1 (MQ=60)
T‑CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAA > SRR4302536.1436504/1‑94 (MQ=60)
CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAAG < SRR4302536.6356299/94‑1 (MQ=60)
TCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAAGT > SRR4302536.497949/1‑94 (MQ=60)
CGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAAGTC < SRR4302536.3866407/94‑1 (MQ=60)
CGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAAGTC < SRR4302536.1321665/94‑1 (MQ=60)
GGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAAGTCG < SRR4302536.1807794/94‑1 (MQ=60)
GGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAAGTCG < SRR4302536.1533935/94‑1 (MQ=60)
GGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAAGTCGGAA > SRR4302536.6882679/1‑94 (MQ=60)
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GCCTTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTT‑CTCGGCAGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAA‑TGGGCGGTACTGGTTAATGAATTTGGGGAAGTCGGAA > NC_000913/2265792‑2265978
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
