Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,268,593 |
T→C |
intergenic (+28/‑153) |
spr → / → rtn |
putative lipoprotein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,268,593 | 0 | T | C | 99.0%
| 652.1
/ ‑2.7
| 205 | intergenic (+28/‑153) | spr/rtn | putative lipoprotein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (103/98); total (106/99) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.72e-01 |
Only 100 of 210 total aligned reads displayed.
ATGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCA > NC_000913/2268503‑2268682
|
atgaatgaACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCAt > 2:1259230/1‑93 (MQ=255)
tgaatgaaCCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTGGGCCATc > 1:914570/1‑93 (MQ=255)
tgaatgaaCCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGAATGCAATCCCTTGGCCATc > 1:4691332/1‑93 (MQ=255)
gaatgaaCCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATcc < 1:639226/93‑1 (MQ=255)
gaatgaaCCGTACTAGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATcc < 1:177675/93‑1 (MQ=255)
aatgaaCCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCt > 2:937952/1‑93 (MQ=255)
aatgaaCCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCt < 2:4172868/93‑1 (MQ=255)
gaaCCGTACTGGAAGAAGCGCTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGAc > 1:276545/1‑93 (MQ=255)
aCCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGa > 1:1059433/1‑93 (MQ=255)
aCCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGa > 2:3069556/1‑93 (MQ=255)
ccGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAg < 1:3647850/93‑1 (MQ=255)
gTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGTCATCCTGACGAGtt > 2:1710115/1‑93 (MQ=255)
gTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGtt < 2:3807164/93‑1 (MQ=255)
tACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTa > 2:4330929/1‑93 (MQ=255)
aCTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTaa < 2:4308865/93‑1 (MQ=255)
aCTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTaa < 1:3368914/93‑1 (MQ=255)
aCTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAAACGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTaa > 1:3435939/1‑93 (MQ=255)
aCTGGAAGAAGCGTTACAACGAAGCACGCCGGATTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTaa < 2:2333038/93‑1 (MQ=255)
cTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAAc < 1:2956254/93‑1 (MQ=255)
tGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACt < 1:1147793/93‑1 (MQ=255)
tGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACt > 1:3366046/1‑93 (MQ=255)
tGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCAGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACt > 2:3078491/1‑93 (MQ=255)
ggAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTg > 2:1909640/1‑93 (MQ=255)
aagaagCGTTACAACGAAGCACGCTGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGaa < 1:2848455/93‑1 (MQ=255)
agaagCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGaaa > 2:1208764/1‑93 (MQ=255)
gaagCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAg > 2:3481752/1‑93 (MQ=255)
gaagCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAg > 1:4554247/1‑93 (MQ=255)
agCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCa < 2:642452/93‑1 (MQ=255)
gCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCAc < 2:1096864/93‑1 (MQ=255)
gCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCAc > 1:4425621/1‑93 (MQ=255)
ttACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGc > 2:4420687/1‑93 (MQ=255)
ttACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGc > 2:2385143/1‑93 (MQ=255)
cAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTa < 2:2235319/93‑1 (MQ=255)
cAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTa < 1:1866824/93‑1 (MQ=255)
aaCGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAg < 1:3506032/93‑1 (MQ=255)
aCGAAGCACGCCTGGTTCTCAGCCGCAGCTAATAAGCCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAgg < 1:3963342/93‑1 (MQ=255)
cGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGc < 1:3803976/93‑1 (MQ=255)
gaggCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCa < 1:3234528/90‑1 (MQ=255)
gAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCa < 1:2600078/93‑1 (MQ=255)
aaGCACGTCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAg < 2:4621661/93‑1 (MQ=255)
aaGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAg > 2:3930874/1‑93 (MQ=255)
cACGGCGGGTTCCCAGCCGCAGCTAATAAACCGGTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGc < 1:82471/93‑1 (MQ=255)
cACGCTGGGTTCTCAGCCGCAGCTAATAAACCGTATGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGc < 1:2105534/93‑1 (MQ=255)
aCGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCt < 1:3957534/93‑1 (MQ=255)
aCGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCt < 1:2259930/93‑1 (MQ=255)
aCGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCt > 2:1972166/1‑93 (MQ=255)
gCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttc < 2:2880714/93‑2 (MQ=255)
cGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttttt > 1:2803614/1‑93 (MQ=255)
cGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttttt > 1:2250400/1‑93 (MQ=255)
gggTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCCATACCTTGGCCATACTGACGCGTTAACTAAAAGCCCTGCTTACGCAGTGAttttat > 2:3437091/1‑91 (MQ=255)
ggTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTg > 2:2785305/1‑93 (MQ=255)
gTTTTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCCTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGt > 2:3286588/1‑93 (MQ=255)
gTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGt < 1:1201782/93‑1 (MQ=255)
gTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGt > 2:1655506/1‑93 (MQ=255)
ttCTCAGCCGCAGCTACTAAACCGTTGGGATGCAATCGTTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGtt < 2:267444/93‑1 (MQ=255)
tcAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttc < 1:1630899/93‑1 (MQ=255)
tcAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttc > 2:3652041/1‑93 (MQ=255)
cAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttca < 1:350230/93‑1 (MQ=255)
aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttcat < 2:843535/93‑1 (MQ=255)
aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttcat > 2:2173300/1‑93 (MQ=255)
aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttcat < 2:3684514/93‑1 (MQ=255)
aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttcat < 1:3838382/93‑1 (MQ=255)
gCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttcatt < 2:4031513/93‑1 (MQ=255)
gCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTtcattcat > 2:4053901/1‑93 (MQ=255)
gCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTtcattcat > 1:2361232/1‑93 (MQ=255)
cAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATtcatc > 1:2466615/1‑93 (MQ=255)
cTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCaga < 2:2983651/93‑1 (MQ=255)
cTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCaga > 2:221550/1‑93 (MQ=255)
taataaACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCagag < 1:3106511/93‑1 (MQ=255)
taataaACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCagag > 2:849799/1‑93 (MQ=255)
ataaACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGaa < 1:3835040/93‑1 (MQ=255)
taaACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGaaa > 2:4480696/1‑93 (MQ=255)
aaaCCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGaaaa > 2:3142854/1‑93 (MQ=255)
aaaCCGTTTGGATGCAATCCCTTGGCAATCCTGACGAGGTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCCTTCATCATAGaaaa > 2:4585424/1‑93 (MQ=255)
aaCCGTTTGGATGCAATCCATTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAat < 1:3452874/93‑1 (MQ=255)
aCCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAatg > 1:940510/1‑93 (MQ=255)
ccGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAatga < 1:3418430/93‑1 (MQ=255)
cGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAatgat < 2:666040/93‑1 (MQ=255)
tttGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGt > 2:4348298/1‑93 (MQ=255)
ttGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGtt < 2:1582247/93‑1 (MQ=255)
ggATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTc < 2:424496/93‑1 (MQ=255)
gATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTcc < 2:334229/93‑1 (MQ=255)
aTGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCcg < 2:1532290/93‑1 (MQ=255)
aTGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCcg > 2:796009/1‑93 (MQ=255)
gCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCcgcg > 1:4010717/1‑93 (MQ=255)
cAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGt < 1:2050810/93‑1 (MQ=255)
aaTCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTc > 2:2062114/1‑93 (MQ=255)
aTCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCt > 1:4198903/1‑93 (MQ=255)
aTCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCt < 2:629701/93‑1 (MQ=255)
cccTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTg < 1:4400278/93‑1 (MQ=255)
ccTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGa < 1:1253424/93‑1 (MQ=255)
ccTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGa > 2:462517/1‑93 (MQ=255)
ccTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGa < 1:1514567/93‑1 (MQ=255)
ccTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGa > 2:1489778/1‑93 (MQ=255)
ccTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTCAATTCATCAGAGCAAATGATATTTCCGGGGCTTgt > 1:1406210/1‑92 (MQ=255)
ccTTGGCCATCCTGACGAGTTAACTGAAAGCACGGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGa < 1:4580394/93‑1 (MQ=255)
ttGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATc > 2:534383/1‑93 (MQ=255)
tGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATcc > 2:464646/1‑93 (MQ=255)
ggCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCa < 2:903238/93‑1 (MQ=255)
ggCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCa < 1:331349/93‑1 (MQ=255)
|
ATGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCA > NC_000913/2268503‑2268682
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCATGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCAGGCT > NC_000913/2268501‑2268686
|
GCATGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCA < SRR4302544.7807/94‑1 (MQ=60)
ATGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATC > SRR4302544.4595643/1‑94 (MQ=60)
ATGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTGGGCCATC > SRR4302544.923607/1‑94 (MQ=60)
ATGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGAATGCAATCCCTTGGCCATC > SRR4302544.4737676/1‑94 (MQ=60)
TGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCGGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCC > SRR4302544.238954/1‑94 (MQ=60)
GAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCT < SRR4302544.645525/94‑1 (MQ=60)
GAATGAACCGTACTAGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCT < SRR4302544.179436/94‑1 (MQ=60)
AATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTG > SRR4302544.1084640/1‑94 (MQ=60)
ATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGA < SRR4302544.2062189/94‑1 (MQ=60)
TGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGAC < SRR4302544.353584/94‑1 (MQ=60)
TGAACCGTACTGGAAGAAGCGCTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGAC > SRR4302544.279441/1‑94 (MQ=60)
GAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACG < SRR4302544.3452145/94‑1 (MQ=60)
AACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGA > SRR4302544.1069955/1‑94 (MQ=60)
CCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGT < SRR4302544.3684250/94‑1 (MQ=60)
CCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGT < SRR4302544.4019057/94‑1 (MQ=60)
GTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTA > SRR4302544.3787013/1‑94 (MQ=60)
TACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAAACGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAA > SRR4302544.3468789/1‑94 (MQ=60)
ACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAAC < SRR4302544.3401074/94‑1 (MQ=60)
ACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAAC < SRR4302544.3401073/94‑1 (MQ=60)
CTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACT > SRR4302544.3398174/1‑94 (MQ=60)
CTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACT < SRR4302544.2984643/94‑1 (MQ=60)
TGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTG < SRR4302544.1159210/94‑1 (MQ=60)
TGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTG < SRR4302544.2100660/94‑1 (MQ=60)
AAGAAGCGTTACAACGAAGCACGCTGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAA < SRR4302544.2875971/94‑1 (MQ=60)
AAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAA < SRR4302544.1835423/94‑1 (MQ=60)
AGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAG > SRR4302544.4599703/1‑94 (MQ=60)
AGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAG < SRR4302544.982396/94‑1 (MQ=60)
GAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGC < SRR4302544.159446/94‑1 (MQ=60)
GAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGC > SRR4302544.4502159/1‑94 (MQ=60)
AAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCA > SRR4302544.790145/1‑94 (MQ=60)
AGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCAC > SRR4302544.4470273/1‑94 (MQ=60)
AGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCAC < SRR4302544.3538763/94‑1 (MQ=60)
GTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGC > SRR4302544.3872418/1‑94 (MQ=60)
CAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAG < SRR4302544.1884866/94‑1 (MQ=60)
AACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGG < SRR4302544.4105264/94‑1 (MQ=60)
AACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGG < SRR4302544.3539471/94‑1 (MQ=60)
ACGAAGCACGCCTGGTTCTCAGCCGCAGCTAATAAGCCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGC < SRR4302544.4002761/94‑1 (MQ=60)
ACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGC < SRR4302544.3191857/94‑1 (MQ=60)
ACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGC < SRR4302544.4002760/94‑1 (MQ=60)
CGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCA < SRR4302544.900637/94‑1 (MQ=60)
CGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCA < SRR4302544.3841668/94‑1 (MQ=60)
CGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCA > SRR4302544.1695834/1‑94 (MQ=60)
CGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCA > SRR4302544.3291312/1‑94 (MQ=60)
GAGGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAG < SRR4302544.3265489/94‑1 (MQ=60)
GAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAG < SRR4302544.2625067/94‑1 (MQ=60)
GAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAG > SRR4302544.2866611/1‑94 (MQ=60)
GAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAG > SRR4302544.565269/1‑94 (MQ=60)
AAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGT < SRR4302544.3902977/94‑1 (MQ=60)
CACGGCGGGTTCCCAGCCGCAGCTAATAAACCGGTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCT < SRR4302544.83263/94‑1 (MQ=60)
CACGCTGGGTTCTCAGCCGCAGCTAATAAACCGTATGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCT < SRR4302544.2125793/94‑1 (MQ=60)
ACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTT < SRR4302544.3996884/94‑1 (MQ=60)
ACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTT < SRR4302544.2281187/94‑1 (MQ=60)
CCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTT > SRR4302544.2271547/1‑94 (MQ=60)
CCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTT > SRR4302544.2552692/1‑94 (MQ=60)
CCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTT > SRR4302544.3876179/1‑94 (MQ=60)
CCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTT > SRR4302544.2830640/1‑94 (MQ=60)
CCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTT > SRR4302544.2271692/1‑94 (MQ=60)
CGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTT < SRR4302544.212139/94‑1 (MQ=60)
GTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTT < SRR4302544.1213689/94‑1 (MQ=60)
TCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCA < SRR4302544.1646949/94‑1 (MQ=60)
CAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCAT < SRR4302544.353822/94‑1 (MQ=60)
AGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATT < SRR4302544.3876443/94‑1 (MQ=60)
AGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATT > SRR4302544.4736903/1‑94 (MQ=60)
AGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATT > SRR4302544.4412162/1‑94 (MQ=60)
AGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAACACTGCTTATGCACTGATTTTTTGTTTTCATT > SRR4302544.4736904/1‑94 (MQ=60)
CCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCA > SRR4302544.940724/1‑94 (MQ=60)
CGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCAT > SRR4302544.2383589/1‑94 (MQ=60)
GCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATC > SRR4302544.2490180/1‑94 (MQ=60)
CAGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCG > SRR4302544.2331955/1‑94 (MQ=60)
AGCTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAG < SRR4302544.3060468/94‑1 (MQ=60)
CTAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAG < SRR4302544.2261432/94‑1 (MQ=60)
TAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGA > SRR4302544.3469305/1‑94 (MQ=60)
TAATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGA < SRR4302544.3136083/94‑1 (MQ=60)
atacgCCGTTTGGATGCAATCCCTTGGCCAACCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAA < SRR4302544.4730358/89‑1 (MQ=60)
ATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAA < SRR4302544.3873066/94‑1 (MQ=60)
ATAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAA > SRR4302544.4610594/1‑94 (MQ=60)
TAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAA > SRR4302544.1251942/1‑94 (MQ=60)
TAAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAA < SRR4302544.3032521/94‑1 (MQ=60)
AAACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAAT < SRR4302544.3417652/94‑1 (MQ=60)
AACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATG > SRR4302544.949770/1‑94 (MQ=60)
AACCGTTTGGATGCAATCCATTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATG < SRR4302544.3485837/94‑1 (MQ=60)
ACCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGA > SRR4302544.1212318/1‑94 (MQ=60)
CCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGAT > SRR4302544.2893937/1‑94 (MQ=60)
CCGTTTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGAT < SRR4302544.3451111/94‑1 (MQ=60)
TTGGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTT > SRR4302544.1458575/1‑94 (MQ=60)
TGATGCAATCCCTTGGCCATCCTGACGAGTTAACTGAAACCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCC < SRR4302544.3604908/94‑1 (MQ=60)
TGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCG > SRR4302544.4050615/1‑94 (MQ=60)
CAATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTC < SRR4302544.2070559/94‑1 (MQ=60)
AATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCT > SRR4302544.4240764/1‑94 (MQ=60)
AATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCT > SRR4302544.2801633/1‑94 (MQ=60)
ATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTT < SRR4302544.2715764/94‑1 (MQ=60)
ATCCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTT > SRR4302544.3647609/1‑94 (MQ=60)
CCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGA < SRR4302544.4444748/94‑1 (MQ=60)
CCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGA > SRR4302544.1420213/1‑94 (MQ=60)
CCCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTCAATTCATCAGAGCAAATGATATTTCCGgggcttgt > SRR4302544.1420214/1‑86 (MQ=60)
CCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGAT < SRR4302544.1529584/94‑1 (MQ=60)
CCTTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGAT < SRR4302544.1265759/94‑1 (MQ=60)
CCTTGGCCATCCTGACGAGTTAACTGAAAGCACGGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGAT < SRR4302544.4626012/94‑1 (MQ=60)
TTGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCC > SRR4302544.3367489/1‑94 (MQ=60)
TGGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCA < SRR4302544.4468657/94‑1 (MQ=60)
GGCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCAG < SRR4302544.334795/94‑1 (MQ=60)
GCCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCAGG > SRR4302544.4187904/1‑94 (MQ=60)
GCCATCCTGACGAGTTAACTGAAAACACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCAGG < SRR4302544.3259318/94‑1 (MQ=60)
CCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCAGGC < SRR4302544.4614774/94‑1 (MQ=60)
CCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCAGGC < SRR4302544.3438708/94‑1 (MQ=60)
CATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCAGGCT > SRR4302544.2389032/1‑94 (MQ=60)
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GCATGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCAGGCT > NC_000913/2268501‑2268686
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
