Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,281,515	A→G	R151R (CGT→CGC)	yejK ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,281,515	0	A	G	100.0%	885.9 / NA	269	R151R (CGT→CGC)	yejK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (144/125); total (144/125)

Only 100 of 275 total aligned reads displayed.

GAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATACGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCT  >  NC_000913/2281425‑2281604

  aaTCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATTGATGcgcg                                                                                       >  2:3249213/1‑93 (MQ=255)

  aaTCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGcgcg                                                                                       >  1:1087718/1‑93 (MQ=255)

   aTCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATgcgcgc                                                                                      <  2:2319512/93‑1 (MQ=255)

   aTCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATgcgcgc                                                                                      <  1:2566107/93‑1 (MQ=255)

      cGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGcaac                                                                                   <  1:2756837/93‑1 (MQ=255)

       gCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGcaaca                                                                                  >  1:4197884/1‑93 (MQ=255)

        ccACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGcaacaa                                                                                 <  2:4463961/93‑1 (MQ=255)

         cACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAat                                                                                >  2:6702377/1‑93 (MQ=255)

         cACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAat                                                                                >  2:4582630/1‑93 (MQ=255)

         cACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAat                                                                                <  1:5558161/93‑1 (MQ=255)

         cACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAat                                                                                >  2:2870533/1‑93 (MQ=255)

          aCTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAata                                                                               >  1:3516854/1‑93 (MQ=255)

          aCTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAata                                                                               >  2:6584639/1‑93 (MQ=255)

           cTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAatat                                                                              >  1:2363119/1‑93 (MQ=255)

           cTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCAATCGGTTAAATCGATGCGCGCAACAatat                                                                              >  2:6447246/1‑93 (MQ=255)

            tttGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATc                                                                             >  1:6238368/1‑93 (MQ=255)

            tttGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATc                                                                             <  2:3022593/93‑1 (MQ=255)

            ttggcgcCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATc                                                                             <  1:512136/90‑1 (MQ=255)

               gcgcCCTACTCGCCCTTCCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGc                                                                          <  1:3809597/93‑1 (MQ=255)

                  cccTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtg                                                                       >  2:1607708/1‑93 (MQ=255)

                  cccTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtg                                                                       >  2:3454544/1‑93 (MQ=255)

                   ccTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtga                                                                      >  1:1772410/1‑93 (MQ=255)

                    cTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgat                                                                     >  2:2086197/1‑93 (MQ=255)

                    cTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgat                                                                     >  2:5616244/1‑93 (MQ=255)

                    cTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgat                                                                     <  1:2021031/93‑1 (MQ=255)

                     tACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgatt                                                                    >  2:4714728/1‑93 (MQ=255)

                      aCTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgattg                                                                   <  2:4422545/93‑1 (MQ=255)

                       cTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgattga                                                                  <  2:1800205/93‑1 (MQ=255)

                           cccTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATc                                                              >  1:5963403/1‑93 (MQ=255)

                           cccTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATAACCGCATGATTGATATc                                                              >  2:4136537/1‑93 (MQ=255)

                            ccTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCa                                                             >  1:339097/1‑93 (MQ=255)

                            ccTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCa                                                             >  2:5965036/1‑93 (MQ=255)

                            ccTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCa                                                             >  1:899263/1‑93 (MQ=255)

                             cTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCaa                                                            >  1:1978357/1‑93 (MQ=255)

                             cTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCaa                                                            <  1:2891943/93‑1 (MQ=255)

                              tttCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAg                                                           >  1:4458126/1‑93 (MQ=255)

                              tttCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAg                                                           >  2:6113357/1‑93 (MQ=255)

                               ttCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGa                                                          >  2:2547663/1‑93 (MQ=255)

                                tCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGAt                                                         >  1:4555316/1‑93 (MQ=255)

                                  aGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATaa                                                       >  2:5223446/1‑93 (MQ=255)

                                  aGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATaa                                                       <  1:5363267/93‑1 (MQ=255)

                                   ggAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAt                                                      <  1:3760288/93‑1 (MQ=255)

                                    gAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtg                                                     <  2:1972570/93‑1 (MQ=255)

                                     aaaGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgg                                                    <  2:1188627/93‑1 (MQ=255)

                                     aaaGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgg                                                    <  1:3364113/93‑1 (MQ=255)

                                     aaaGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgg                                                    <  1:3674178/93‑1 (MQ=255)

                                      aaGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtggg                                                   <  1:2671632/93‑1 (MQ=255)

                                       aGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggt                                                  <  1:5812632/93‑1 (MQ=255)

                                       aGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggt                                                  <  2:4782250/93‑1 (MQ=255)

                                       aGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggt                                                  <  1:6575476/93‑1 (MQ=255)

                                       aGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggt                                                  >  2:5431166/1‑93 (MQ=255)

                                        gTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggtt                                                 >  2:4058091/1‑93 (MQ=255)

                                         tGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggttg                                                <  1:5405524/93‑1 (MQ=255)

                                          gagaTAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggttgg                                               <  2:1717574/93‑1 (MQ=255)

                                            gaTAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggttgggt                                             <  1:1914585/93‑1 (MQ=255)

                                            gaTAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggttgggt                                             >  2:1662987/1‑93 (MQ=255)

                                             aTAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATgggttgggtt                                            <  1:1674576/93‑1 (MQ=255)

                                             aTAGCAGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATgggttgggtt                                            <  1:6403019/93‑1 (MQ=255)

                                               aGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGa                                          <  1:6069252/93‑1 (MQ=255)

                                                gCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGAt                                         >  2:5140856/1‑93 (MQ=255)

                                                  gggTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGt                                       >  2:2478995/1‑93 (MQ=255)

                                                   ggTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTc                                      <  1:4924180/93‑1 (MQ=255)

                                                   ggTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTc                                      <  2:3495503/93‑1 (MQ=255)

                                                     tGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCga                                    <  1:3533216/93‑1 (MQ=255)

                                                      ggACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCgag                                   >  1:710736/1‑93 (MQ=255)

                                                       gACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCgaga                                  >  2:5503548/1‑93 (MQ=255)

                                                       gACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCgaga                                  >  1:5688949/1‑93 (MQ=255)

                                                            tGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTc                             <  1:1390576/93‑1 (MQ=255)

                                                             ggATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCg                            >  2:5071196/1‑93 (MQ=255)

                                                             ggATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCg                            >  1:1493678/1‑93 (MQ=255)

                                                              gATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGt                           >  2:6471681/1‑93 (MQ=255)

                                                                ttGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTa                         >  2:4893089/1‑93 (MQ=255)

                                                                 tGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTaa                        <  2:6181620/93‑1 (MQ=255)

                                                                  ggTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAc                       <  1:4114475/93‑1 (MQ=255)

                                                                   gTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAcg                      <  1:4228800/93‑1 (MQ=255)

                                                                     ttCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAcgcg                    <  1:1322200/93‑1 (MQ=255)

                                                                       cccATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCa                  >  2:1476628/1‑93 (MQ=255)

                                                                          aTTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATAc               <  1:5299516/93‑1 (MQ=255)

                                                                          aTTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATAc               <  2:3163745/93‑1 (MQ=255)

                                                                          aTTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATAc               <  2:3006599/93‑1 (MQ=255)

                                                                           ttCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACt              >  1:1208845/1‑93 (MQ=255)

                                                                           ttCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACt              >  2:6309284/1‑93 (MQ=255)

                                                                            tCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTg             >  2:1411520/1‑93 (MQ=255)

                                                                             cGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGc            <  2:3802946/93‑1 (MQ=255)

                                                                             cGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGc            <  2:2237882/93‑1 (MQ=255)

                                                                             cGGTGAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGc            <  1:3943927/93‑1 (MQ=255)

                                                                              ggTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCt           >  1:3022276/1‑93 (MQ=255)

                                                                              ggTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCt           >  2:130663/1‑93 (MQ=255)

                                                                               gTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTc          >  2:3908064/1‑93 (MQ=255)

                                                                               gTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTc          >  1:1006187/1‑93 (MQ=255)

                                                                               gTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAAGAGCATACTGCta          >  1:822909/1‑92 (MQ=255)

                                                                                ttAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCa         >  1:4866448/1‑93 (MQ=255)

                                                                                  aaaTCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAgg       <  1:3085830/93‑1 (MQ=255)

                                                                                   aaTCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTTGTTAACGCGCATACTGCTCAGGt      >  1:4815258/1‑93 (MQ=255)

                                                                                   aaTCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGt      <  2:4031054/93‑1 (MQ=255)

                                                                                   aaTCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGt      >  1:2244381/1‑93 (MQ=255)

                                                                                    aTCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGtt     <  1:1031568/93‑1 (MQ=255)

                                                                                      cGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGc   <  2:2721085/93‑1 (MQ=255)

                                                                                       gATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCt  <  2:6389549/93‑1 (MQ=255)

                                                                                       gATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCt  >  1:2160815/1‑93 (MQ=255)

GAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATACGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCT  >  NC_000913/2281425‑2281604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATACGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCT  >  NC_000913/2281423‑2281604

AAGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGC                                                                                          <  SRR4302536.5105268/94‑1 (MQ=60)

AAGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGC                                                                                          <  SRR4302536.4231361/94‑1 (MQ=60)

AAGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGACTGGGTTCCCATTCGGGTAAATCGATTC                                                                                          >  SRR4302536.1365606/1‑94 (MQ=60)

 ATAAATCCGCCACTTTGCACCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCG                                                                                         <  SRR4302536.552614/94‑1 (MQ=60)

 AGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCG                                                                                         <  SRR4302536.511157/94‑1 (MQ=60)

   AAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCG                                                                                       >  SRR4302536.1720383/1‑94 (MQ=60)

   AAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCG                                                                                       >  SRR4302536.1120331/1‑94 (MQ=60)

     ATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCA                                                                                     <  SRR4302536.2643309/94‑1 (MQ=60)

     ATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCA                                                                                     <  SRR4302536.1509300/94‑1 (MQ=60)

       CCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAAC                                                                                   <  SRR4302536.3896238/94‑1 (MQ=60)

        CGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACA                                                                                  >  SRR4302536.4322654/1‑94 (MQ=60)

        CGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACA                                                                                  <  SRR4302536.2838886/94‑1 (MQ=60)

        CGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACA                                                                                  <  SRR4302536.1515728/94‑1 (MQ=60)

         GCCACTTTGCGCCCT‑CTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGGCTCTGGATTTGTTTTCCATTCGGGTAAATCGATGCGCGCCACAAA                                                                                >  SRR4302536.1213566/1‑94 (MQ=60)

          CCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAAT                                                                                >  SRR4302536.4873155/1‑94 (MQ=60)

           CACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGGGCGCAACAATA                                                                               >  SRR4302536.1101/1‑94 (MQ=60)

           CACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATA                                                                               >  SRR4302536.5866348/1‑94 (MQ=60)

           CACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATA                                                                               <  SRR4302536.5723693/94‑1 (MQ=60)

           CACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATA                                                                               >  SRR4302536.3729282/1‑94 (MQ=60)

           CACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATA                                                                               >  SRR4302536.2427508/1‑94 (MQ=60)

           CACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATA                                                                               >  SRR4302536.3621882/1‑94 (MQ=60)

           CACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATA                                                                               >  SRR4302536.2069676/1‑94 (MQ=60)

           CACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATA                                                                               >  SRR4302536.951233/1‑94 (MQ=60)

            ACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATAT                                                                              >  SRR4302536.2434754/1‑94 (MQ=60)

            ACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATAT                                                                              <  SRR4302536.5275411/94‑1 (MQ=60)

             CTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATC                                                                             >  SRR4302536.6424213/1‑94 (MQ=60)

             CTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATC                                                                             >  SRR4302536.2127367/1‑94 (MQ=60)

             CTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATC                                                                             <  SRR4302536.2022609/94‑1 (MQ=60)

              TTGGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCC                                                                            <  SRR4302536.525279/94‑1 (MQ=60)

               TTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCG                                                                           <  SRR4302536.4339358/94‑1 (MQ=60)

                 GCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCA                                                                         <  SRR4302536.3478600/94‑1 (MQ=60)

                 GCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCA                                                                         <  SRR4302536.5732423/94‑1 (MQ=60)

                 GCGCCCTACTCGCCCTTCCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCA                                                                         <  SRR4302536.3923152/94‑1 (MQ=60)

                   GCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATG                                                                       >  SRR4302536.2946543/1‑94 (MQ=60)

                   GCCCTACTCGCCCTTTCAGGAAAGCGAGATAGCGGGGGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATT                                                                       >  SRR4302536.5347207/1‑94 (MQ=60)

                    CCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGA                                                                      >  SRR4302536.1826024/1‑94 (MQ=60)

                     CCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGAT                                                                     >  SRR4302536.3954314/1‑94 (MQ=60)

                      CTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATT                                                                    <  SRR4302536.2081866/94‑1 (MQ=60)

                       TACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTG                                                                   >  SRR4302536.2488789/1‑94 (MQ=60)

                        ACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGA                                                                  <  SRR4302536.6768581/94‑1 (MQ=60)

                         CTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGAT                                                                 >  SRR4302536.4447607/1‑94 (MQ=60)

                         CTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGAT                                                                 >  SRR4302536.2275801/1‑94 (MQ=60)

                          TCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATA                                                                <  SRR4302536.5320401/94‑1 (MQ=60)

                          TCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATA                                                                >  SRR4302536.422447/1‑94 (MQ=60)

                           CGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATAT                                                               <  SRR4302536.1186080/94‑1 (MQ=60)

                            GCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATC                                                              >  SRR4302536.859274/1‑94 (MQ=60)

                            GCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATC                                                              >  SRR4302536.896518/1‑94 (MQ=60)

                            GCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATC                                                              >  SRR4302536.6141137/1‑94 (MQ=60)

                             CCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCA                                                             <  SRR4302536.658015/94‑1 (MQ=60)

                             CCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCA                                                             <  SRR4302536.3837221/94‑1 (MQ=60)

                             CCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCA                                                             >  SRR4302536.925758/1‑94 (MQ=60)

                             CCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCA                                                             >  SRR4302536.348071/1‑94 (MQ=60)

                              CCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAA                                                            >  SRR4302536.2037848/1‑94 (MQ=60)

                              CCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAA                                                            >  SRR4302536.5769382/1‑94 (MQ=60)

                              CCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAA                                                            >  SRR4302536.259367/1‑94 (MQ=60)

                               CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                           >  SRR4302536.4592090/1‑94 (MQ=60)

                               CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                           >  SRR4302536.4971548/1‑94 (MQ=60)

                               CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                           <  SRR4302536.1046660/94‑1 (MQ=60)

                               CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                           <  SRR4302536.2679367/94‑1 (MQ=60)

                               CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                           <  SRR4302536.2977234/94‑1 (MQ=60)

                                TTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGA                                                          <  SRR4302536.1157894/94‑1 (MQ=60)

                                TTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGA                                                          <  SRR4302536.4888681/94‑1 (MQ=60)

                                TTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGA                                                          <  SRR4302536.1306533/94‑1 (MQ=60)

                                 TTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGAT                                                         >  SRR4302536.4691945/1‑94 (MQ=60)

                                  TCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATA                                                        <  SRR4302536.170496/94‑1 (MQ=60)

                                  TCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATA                                                        <  SRR4302536.63279/94‑1 (MQ=60)

                                    AGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAT                                                      <  SRR4302536.5523274/94‑1 (MQ=60)

                                     GGGAAGTGAGATAGCGGGTGGACTCTGGCTTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATG                                                     >  SRR4302536.4896422/1‑94 (MQ=60)

                                     GGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATG                                                     <  SRR4302536.4222034/94‑1 (MQ=60)

                                     GGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATG                                                     >  SRR4302536.3497833/1‑94 (MQ=60)

                                     GGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATG                                                     <  SRR4302536.3872597/94‑1 (MQ=60)

                                      GAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGG                                                    <  SRR4302536.3485542/94‑1 (MQ=60)

                                       AAAGTGAGATAGCGGGTGGCCTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGG                                                   >  SRR4302536.432759/1‑94 (MQ=60)

                                       AAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTTGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGG                                                   >  SRR4302536.4291396/1‑94 (MQ=60)

                                       AAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGG                                                   <  SRR4302536.3784027/94‑1 (MQ=60)

                                       AAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGG                                                   <  SRR4302536.6086135/94‑1 (MQ=60)

                                       AAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGG                                                   <  SRR4302536.4024241/94‑1 (MQ=60)

                                       AAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGG                                                   <  SRR4302536.3464039/94‑1 (MQ=60)

                                        AAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGT                                                  >  SRR4302536.2748961/1‑94 (MQ=60)

                                        AAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGT                                                  <  SRR4302536.2751515/94‑1 (MQ=60)

                                         AGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTT                                                 <  SRR4302536.2004171/94‑1 (MQ=60)

                                         AGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTT                                                 >  SRR4302536.310789/1‑94 (MQ=60)

                                         AGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTT                                                 <  SRR4302536.6771174/94‑1 (MQ=60)

                                         AGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTT                                                 <  SRR4302536.5985774/94‑1 (MQ=60)

                                           TGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGG                                               <  SRR4302536.5567022/94‑1 (MQ=60)

                                            GAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGG                                              >  SRR4302536.2775101/1‑94 (MQ=60)

                                             AGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGT                                             >  SRR4302536.501418/1‑94 (MQ=60)

                                             AGATAGCGGGTGGACTCTGGATTGGGTTCCCATTCGGTTAAATCGATGCGTGCAGCAATATCCGGATGATTGATCTCAAGATAGTGGGGTGGGT                                             >  SRR4302536.5465212/1‑94 (MQ=60)

                                             AGATAGCGGGTGGACTCTGGATTGGGTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGGATGATTGATATCAAGATGATGGGTTGGGT                                             >  SRR4302536.5465211/1‑94 (MQ=60)

                                              GATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTT                                            <  SRR4302536.1972170/94‑1 (MQ=60)

                                              GATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTT                                            <  SRR4302536.303607/94‑1 (MQ=60)

                                               ATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTG                                           <  SRR4302536.1810308/94‑1 (MQ=60)

                                               ATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTG                                           >  SRR4302536.3637390/1‑94 (MQ=60)

                                               ATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTG                                           >  SRR4302536.2937258/1‑94 (MQ=60)

                                               ATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTG                                           <  SRR4302536.1723139/94‑1 (MQ=60)

                                               ATAGCAGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTG                                           <  SRR4302536.6594151/94‑1 (MQ=60)

                                                TAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGA                                          >  SRR4302536.5041636/1‑94 (MQ=60)

                                                 AGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGAT                                         <  SRR4302536.6250304/94‑1 (MQ=60)

                                                 AGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGAT                                         <  SRR4302536.1882446/94‑1 (MQ=60)

                                                     GGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCG                                     <  SRR4302536.5072145/94‑1 (MQ=60)

                                                     GGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCG                                     >  SRR4302536.66855/1‑94 (MQ=60)

                                                       TGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAG                                   <  SRR4302536.3638805/94‑1 (MQ=60)

                                                       TGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAG                                   >  SRR4302536.731511/1‑94 (MQ=60)

                                                        GGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGA                                  <  SRR4302536.5530025/94‑1 (MQ=60)

                                                        GGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGA                                  >  SRR4302536.5858107/1‑94 (MQ=60)

                                                          ACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATT                                >  SRR4302536.377711/1‑94 (MQ=60)

                                                            TCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTT                              <  SRR4302536.5952965/94‑1 (MQ=60)

                                                             CTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGGTGATGTCGAGATTTTC                             >  SRR4302536.1792875/1‑94 (MQ=60)

                                                              TGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCG                            <  SRR4302536.2062058/94‑1 (MQ=60)

                                                              TGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCG                            >  SRR4302536.1537785/1‑94 (MQ=60)

                                                              TGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCG                            <  SRR4302536.1431980/94‑1 (MQ=60)

                                                              TGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCG                            >  SRR4302536.1427699/1‑94 (MQ=60)

                                                                GATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTT                          >  SRR4302536.3595429/1‑94 (MQ=60)

                                                                 ATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTA                         >  SRR4302536.3898199/1‑94 (MQ=60)

                                                                   TGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAC                       >  SRR4302536.3119688/1‑94 (MQ=60)

                                                                    GGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACG                      <  SRR4302536.4236525/94‑1 (MQ=60)

                                                                     GTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGC                     <  SRR4302536.4354628/94‑1 (MQ=60)

                                                                     GTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGC                     <  SRR4302536.3058490/94‑1 (MQ=60)

                                                                     GTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGAGTTGATGTCGAGATTTTCGTTAACGC                     >  SRR4302536.5553835/1‑94 (MQ=60)

                                                                       TTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGC                   <  SRR4302536.1361670/94‑1 (MQ=60)

                                                                         CCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCAT                 >  SRR4302536.5650499/1‑94 (MQ=60)

                                                                         CCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCAT                 >  SRR4302536.6327803/1‑94 (MQ=60)

                                                                         CCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCAT                 <  SRR4302536.1279436/94‑1 (MQ=60)

                                                                          CCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATA                <  SRR4302536.6782139/94‑1 (MQ=60)

                                                                            ATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACT              >  SRR4302536.5148855/1‑94 (MQ=60)

                                                                            ATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACT              <  SRR4302536.5457561/94‑1 (MQ=60)

                                                                            ATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACT              >  SRR4302536.1245170/1‑94 (MQ=60)

                                                                            ATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACT              <  SRR4302536.3447431/94‑1 (MQ=60)

                                                                               CGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCT           >  SRR4302536.4637705/1‑94 (MQ=60)

                                                                               CGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCT           >  SRR4302536.3111067/1‑94 (MQ=60)

                                                                               CGGTGAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCT           <  SRR4302536.4061098/94‑1 (MQ=60)

                                                                                GGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTC          <  SRR4302536.2167207/94‑1 (MQ=60)

                                                                                GGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTC          >  SRR4302536.1035870/1‑94 (MQ=60)

                                                                                GGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTC          >  SRR4302536.4469274/1‑94 (MQ=60)

                                                                                GGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAAGAGCATACTGCTA          >  SRR4302536.847132/1‑94 (MQ=60)

                                                                                 GTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCA         >  SRR4302536.5012895/1‑94 (MQ=60)

                                                                                  TTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAG        <  SRR4302536.6028269/94‑1 (MQ=60)

                                                                                   TAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGG       <  SRR4302536.645333/94‑1 (MQ=60)

                                                                                   TAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGG       <  SRR4302536.3635826/94‑1 (MQ=60)

                                                                                   TAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGG       <  SRR4302536.6168789/94‑1 (MQ=60)

                                                                                   TAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGG       <  SRR4302536.737825/94‑1 (MQ=60)

                                                                                    AAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTTGTTAACGCGCATACTGCTCAGGT      >  SRR4302536.4960143/1‑94 (MQ=60)

                                                                                    AAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGT      >  SRR4302536.2312312/1‑94 (MQ=60)

                                                                                    AAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGT      <  SRR4302536.3176089/94‑1 (MQ=60)

                                                                                     AATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTT     >  SRR4302536.2419469/1‑94 (MQ=60)

                                                                                     AATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGACGAGATTTTCGTTAACGCGCATACTGCTCAGGTT     >  SRR4302536.105989/1‑94 (MQ=60)

                                                                                      ATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTG    >  SRR4302536.78464/1‑94 (MQ=60)

                                                                                      ATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTG    <  SRR4302536.1062135/94‑1 (MQ=60)

                                                                                       TCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGC   <  SRR4302536.497652/94‑1 (MQ=60)

                                                                                        CGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCT  >  SRR4302536.2225809/1‑94 (MQ=60)

AAGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATACGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCT  >  NC_000913/2281423‑2281604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`