Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,289,578	G→A	L285L (CTG→TTG)	ccmH ←	CcmH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,289,578	0	G	A	100.0%	906.6 / NA	244	L285L (CTG→TTG)	ccmH	CcmH
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (151/93); total (151/93)

Only 100 of 250 total aligned reads displayed.

GCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGT  >  NC_000913/2289490‑2289667

gCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGa                                                                                       >  2:1630595/1‑93 (MQ=255)

 cAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGAc                                                                                      <  2:4868196/93‑1 (MQ=255)

   aCGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGt                                                                                    >  1:1408755/1‑93 (MQ=255)

   aCGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGt                                                                                    >  1:5947428/1‑93 (MQ=255)

    cGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTa                                                                                   >  2:374875/1‑93 (MQ=255)

      gCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGc                                                                                 >  2:514691/1‑93 (MQ=255)

       cTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCa                                                                                <  1:3763409/93‑1 (MQ=255)

       cTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCa                                                                                >  2:1358104/1‑93 (MQ=255)

         tCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGt                                                                              >  2:5603000/1‑93 (MQ=255)

             cAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAc                                                                          >  1:6414186/1‑93 (MQ=255)

             cAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAc                                                                          >  1:2979812/1‑93 (MQ=255)

             cAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAc                                                                          >  2:409776/1‑93 (MQ=255)

             cAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAc                                                                          >  2:1328600/1‑93 (MQ=255)

              aaaTCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAcc                                                                         >  2:5509789/1‑93 (MQ=255)

               aaTCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTATCACCAACTGACGTAGCAGTTCAccg                                                                        <  1:5901274/93‑1 (MQ=255)

                aTCGCTGCTGCTCAAAGGCATTAAACGCCTACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGCCGTAGCAGTTTAtcgc                                                                       >  1:1712355/1‑93 (MQ=255)

                  cGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAccgccg                                                                     <  1:2321590/93‑1 (MQ=255)

                   gctgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGa                                                                    <  1:3077566/93‑1 (MQ=255)

                     tgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAgg                                                                  <  2:3397836/93‑1 (MQ=255)

                     tgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAgg                                                                  >  1:5393378/1‑93 (MQ=255)

                     tgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAgg                                                                  >  1:3557760/1‑93 (MQ=255)

                     tgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAgg                                                                  >  1:6725508/1‑93 (MQ=255)

                        tgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCgg                                                               >  2:2537034/1‑93 (MQ=255)

                        tgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCgg                                                               >  1:541433/1‑93 (MQ=255)

                         gctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGt                                                              <  2:3614992/93‑1 (MQ=255)

                         gctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGt                                                              >  2:1668533/1‑93 (MQ=255)

                          ctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGtt                                                             <  2:3549303/93‑1 (MQ=255)

                          ctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGtt                                                             >  2:5743200/1‑93 (MQ=255)

                           tCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTg                                                            <  2:3023807/93‑1 (MQ=255)

                           tCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTg                                                            >  2:6700756/1‑93 (MQ=255)

                             aaaGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGtg                                                          >  2:2922896/1‑92 (MQ=255)

                             aaaGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTc                                                          >  2:1314467/1‑93 (MQ=255)

                             aaaGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTc                                                          >  1:482180/1‑93 (MQ=255)

                             aaaGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTc                                                          >  1:179838/1‑93 (MQ=255)

                               aGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGt                                                        >  1:2484446/1‑93 (MQ=255)

                               aGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGt                                                        >  2:2884273/1‑93 (MQ=255)

                                 gCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTg                                                      >  2:6501976/1‑93 (MQ=255)

                                 gCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTg                                                      <  1:6513028/93‑1 (MQ=255)

                                  cATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTgg                                                     <  1:2721138/93‑1 (MQ=255)

                                  cATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTgg                                                     >  2:2688103/1‑93 (MQ=255)

                                     tAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGAt                                                  <  2:2494332/93‑1 (MQ=255)

                                       aaCGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCa                                                >  2:3924338/1‑93 (MQ=255)

                                        aCGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAg                                               >  1:6228550/1‑93 (MQ=255)

                                        aCGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAg                                               >  1:6357384/1‑93 (MQ=255)

                                        aCGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAg                                               >  1:1500192/1‑93 (MQ=255)

                                         cGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGa                                              <  1:3331786/93‑1 (MQ=255)

                                          gCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAt                                             >  2:3059895/1‑93 (MQ=255)

                                          gCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAt                                             >  1:3916046/1‑93 (MQ=255)

                                             tACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGaa                                          >  2:4267816/1‑93 (MQ=255)

                                             tACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGaa                                          >  1:6277899/1‑93 (MQ=255)

                                             tACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGaa                                          >  2:1009290/1‑93 (MQ=255)

                                             tACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGaa                                          <  1:4356628/93‑1 (MQ=255)

                                             tACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGACGAGGCGGGTGTCGTTGGGATCAGATGaa                                          >  2:2346117/1‑93 (MQ=255)

                                              aCATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAc                                         <  2:850822/93‑1 (MQ=255)

                                              aCATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAc                                         <  2:3491861/93‑1 (MQ=255)

                                              aCATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGGTGGGATCAGATGAAc                                         >  1:5207373/1‑93 (MQ=255)

                                              aCATGCGTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAc                                         <  1:998149/93‑1 (MQ=255)

                                               cATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACg                                        >  1:366882/1‑93 (MQ=255)

                                                aTGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGa                                       >  2:5655167/1‑93 (MQ=255)

                                                aTGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGa                                       >  2:5947104/1‑93 (MQ=255)

                                                 tGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAg                                      <  1:2454653/93‑1 (MQ=255)

                                                   cTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTc                                    <  1:1044468/93‑1 (MQ=255)

                                                   cTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTc                                    >  2:655997/1‑93 (MQ=255)

                                                   cTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTc                                    <  1:4496494/93‑1 (MQ=255)

                                                    ttAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCa                                   >  1:2575243/1‑93 (MQ=255)

                                                    ttAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGATGTCGTTGGGATCAGATGAACGAGTCa                                   >  2:381610/1‑93 (MQ=255)

                                                     tAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCaa                                  <  1:6716398/93‑1 (MQ=255)

                                                        cacaCGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGc                               >  1:6134364/1‑93 (MQ=255)

                                                         acacGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCt                              >  2:1924936/1‑93 (MQ=255)

                                                         acacGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCt                              >  1:4654199/1‑93 (MQ=255)

                                                         acacGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCt                              >  1:1855614/1‑93 (MQ=255)

                                                         acacGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCt                              >  2:6146160/1‑93 (MQ=255)

                                                           acGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTc                            <  1:5505171/93‑1 (MQ=255)

                                                            cGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCa                           <  2:2726256/93‑1 (MQ=255)

                                                            cGGATATTGCTATGGTCCGGTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCa                           <  1:209709/93‑1 (MQ=255)

                                                               atatTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCg                        >  2:3867371/1‑93 (MQ=255)

                                                                tatTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGt                       >  1:1615691/1‑93 (MQ=255)

                                                                    gCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATcc                   >  1:488040/1‑93 (MQ=255)

                                                                    gCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGATTCCGCGTATcc                   >  1:4734907/1‑93 (MQ=255)

                                                                     cTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATccc                  >  1:4059679/1‑93 (MQ=255)

                                                                      tATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCa                 >  2:5462806/1‑93 (MQ=255)

                                                                      tATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCa                 <  2:4537642/93‑1 (MQ=255)

                                                                      tATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCa                 <  2:1883121/93‑1 (MQ=255)

                                                                      tATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCa                 >  2:1400582/1‑93 (MQ=255)

                                                                       aTGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAg                <  1:1090826/93‑1 (MQ=255)

                                                                        tGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGt               <  1:3154205/93‑1 (MQ=255)

                                                                         ggTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTg              >  1:5672708/1‑93 (MQ=255)

                                                                          gTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTgc             <  1:214595/93‑1 (MQ=255)

                                                                            ccGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTgcag           >  1:1740252/1‑93 (MQ=255)

                                                                             cGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTgcagc          >  1:158644/1‑93 (MQ=255)

                                                                              gTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTgcagca         >  2:4162101/1‑93 (MQ=255)

                                                                               ttCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAt        >  2:4074417/1‑93 (MQ=255)

                                                                               ttCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAt        >  2:5226346/1‑93 (MQ=255)

                                                                                tctcACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATc       <  2:6399701/93‑1 (MQ=255)

                                                                                tctcACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATc       <  2:3665591/93‑1 (MQ=255)

                                                                                  tcACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCAc     >  2:2130097/1‑93 (MQ=255)

                                                                                   cACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACt    <  1:441505/93‑1 (MQ=255)

                                                                                   cACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACt    >  1:2373579/1‑93 (MQ=255)

                                                                                    aCCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTg   >  2:3215321/1‑93 (MQ=255)

                                                                                     ccAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGt  <  1:5100437/93‑1 (MQ=255)

GCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGT  >  NC_000913/2289490‑2289667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTTT  >  NC_000913/2289486‑2289671

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAAC                                                                                              <  SRR4302536.5009665/94‑1 (MQ=60)

    GCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGAC                                                                                          <  SRR4302536.5879611/94‑1 (MQ=60)

      AACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGT                                                                                        >  SRR4302536.2558853/1‑94 (MQ=60)

      AACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGT                                                                                        >  SRR4302536.6124615/1‑94 (MQ=60)

      AACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGT                                                                                        >  SRR4302536.1450653/1‑94 (MQ=60)

      AACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGT                                                                                        >  SRR4302536.3670048/1‑94 (MQ=60)

         GGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGC                                                                                     >  SRR4302536.2397702/1‑94 (MQ=60)

           CTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAG                                                                                   <  SRR4302536.668487/94‑1 (MQ=60)

           CTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAG                                                                                   <  SRR4302536.3875808/94‑1 (MQ=60)

             TCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTT                                                                                 <  SRR4302536.2034372/94‑1 (MQ=60)

             TCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGCT                                                                                 <  SRR4302536.6379192/94‑1 (MQ=60)

               GCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCA                                                                               <  SRR4302536.1473973/94‑1 (MQ=60)

                CCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAC                                                                              >  SRR4302536.6605835/1‑94 (MQ=60)

                CCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAC                                                                              >  SRR4302536.3067522/1‑94 (MQ=60)

                 CAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACC                                                                             >  SRR4302536.3898000/1‑94 (MQ=60)

                 CAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACC                                                                             >  SRR4302536.563645/1‑94 (MQ=60)

                 CAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACC                                                                             >  SRR4302536.4909956/1‑94 (MQ=60)

                  AAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCG                                                                            >  SRR4302536.161258/1‑94 (MQ=60)

                  AAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCG                                                                            >  SRR4302536.1693232/1‑94 (MQ=60)

                   AATCGCTGCTGCTCAAAGGCATTAAACGCCTACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGCCGTAGCAGTTTATCGC                                                                           >  SRR4302536.1761890/1‑94 (MQ=60)

                   AATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTATCACCAACTGACGTAGCAGTTCACCGC                                                                           <  SRR4302536.6077015/94‑1 (MQ=60)

                    ATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCC                                                                          >  SRR4302536.6481355/1‑94 (MQ=60)

                    ATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCC                                                                          >  SRR4302536.4034349/1‑94 (MQ=60)

                      CGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGA                                                                        <  SRR4302536.4488851/94‑1 (MQ=60)

                      CGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGA                                                                        <  SRR4302536.2392036/94‑1 (MQ=60)

                       GCTGCTGCTGAAAGGCATTATACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAG                                                                       >  SRR4302536.6764435/1‑94 (MQ=60)

                       GCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAG                                                                       <  SRR4302536.3167675/94‑1 (MQ=60)

                        CTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCGCCAACTGACGTAGCAGTTCACCGCCGAGG                                                                      >  SRR4302536.3612440/1‑94 (MQ=60)

                        CTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGG                                                                      >  SRR4302536.5554406/1‑94 (MQ=60)

                        CTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGG                                                                      >  SRR4302536.3664151/1‑94 (MQ=60)

                        CTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGG                                                                      >  SRR4302536.6925284/1‑94 (MQ=60)

                        CTGCTGCTCAAAGGCATGAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGG                                                                      <  SRR4302536.6313129/94‑1 (MQ=60)

                          GCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCG                                                                    >  SRR4302536.6923611/1‑94 (MQ=60)

                           CTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGG                                                                   >  SRR4302536.555244/1‑94 (MQ=60)

                             GCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTT                                                                 <  SRR4302536.4992223/94‑1 (MQ=60)

                              CTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTG                                                                >  SRR4302536.5324763/1‑94 (MQ=60)

                              CTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTG                                                                <  SRR4302536.4937252/94‑1 (MQ=60)

                               TCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGT                                                               <  SRR4302536.2745824/94‑1 (MQ=60)

                               TCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGT                                                               <  SRR4302536.1586021/94‑1 (MQ=60)

                                CAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTC                                                              <  SRR4302536.1114364/94‑1 (MQ=60)

                                CAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTC                                                              >  SRR4302536.494713/1‑94 (MQ=60)

                                CAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTC                                                              >  SRR4302536.3230202/1‑94 (MQ=60)

                                CAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTC                                                              >  SRR4302536.184598/1‑94 (MQ=60)

                                CAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTC                                                              >  SRR4302536.3843715/1‑94 (MQ=60)

                                 AAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCG                                                             >  SRR4302536.3482154/1‑94 (MQ=60)

                                 AAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCG                                                             >  SRR4302536.6457979/1‑94 (MQ=60)

                                  AAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGT                                                            >  SRR4302536.2308603/1‑94 (MQ=60)

                                  AAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGT                                                            >  SRR4302536.2559405/1‑94 (MQ=60)

                                   AGGCATTAAACGCATACATGCTTAGAACAAGGATATTGCTATGGGCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGAT                                                           >  SRR4302536.1813425/1‑94 (MQ=60)

                                    GGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTG                                                          >  SRR4302536.2357895/1‑94 (MQ=60)

                                    GGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTG                                                          >  SRR4302536.1306293/1‑94 (MQ=60)

                                     GCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGG                                                         <  SRR4302536.6707103/94‑1 (MQ=60)

                                      CATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGG                                                        <  SRR4302536.2802300/94‑1 (MQ=60)

                                       ATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGA                                                       >  SRR4302536.2180521/1‑94 (MQ=60)

                                          AAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTTACAGCCGCGGCGGTCGTCGTTGGGgacg                                                    >  SRR4302536.338831/1‑90 (MQ=60)

                                          AAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCA                                                    >  SRR4302536.5454199/1‑94 (MQ=60)

                                           AACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAG                                                   >  SRR4302536.1544450/1‑94 (MQ=60)

                                           AACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAG                                                   >  SRR4302536.6546778/1‑94 (MQ=60)

                                           AACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAG                                                   >  SRR4302536.6414122/1‑94 (MQ=60)

                                             CGCATACATGCTTAGCACACGGATATTGTTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAT                                                 <  SRR4302536.5829300/94‑1 (MQ=60)

                                             CGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAT                                                 >  SRR4302536.6585305/1‑94 (MQ=60)

                                             CGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAT                                                 <  SRR4302536.3430403/94‑1 (MQ=60)

                                             CGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAT                                                 >  SRR4302536.4032467/1‑94 (MQ=60)

                                               CATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGA                                               >  SRR4302536.2482224/1‑94 (MQ=60)

                                               CATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGA                                               >  SRR4302536.4822664/1‑94 (MQ=60)

                                               CAGACATGCTTAGGACACGGATATTACTATGGTCCGTTCTCACGAACTGACGTAGCAGTTCACCGTTGATAGGGTTGTCGTTGTGATCAGATGA                                               >  SRR4302536.6603519/1‑94 (MQ=38)

                                                ATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAA                                              >  SRR4302536.6464955/1‑94 (MQ=60)

                                                ATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAA                                              >  SRR4302536.5536655/1‑94 (MQ=60)

                                                 TACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAC                                             <  SRR4302536.4486917/94‑1 (MQ=60)

                                                 TACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGGTGGGATCAGATGAAC                                             >  SRR4302536.5362591/1‑94 (MQ=60)

                                                 TACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTCCACCGCCGACGCGGTTGTCGGTGGGATCAGATTAAC                                             >  SRR4302536.5160356/1‑94 (MQ=60)

                                                  ACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACG                                            >  SRR4302536.376580/1‑94 (MQ=60)

                                                  ACATGCGTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACG                                            <  SRR4302536.1027593/94‑1 (MQ=60)

                                                     TGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGT                                         <  SRR4302536.2528775/94‑1 (MQ=60)

                                                      GCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTC                                        <  SRR4302536.2920530/94‑1 (MQ=60)

                                                       CTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCA                                       >  SRR4302536.5052949/1‑94 (MQ=60)

                                                       CTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCA                                       <  SRR4302536.1075536/94‑1 (MQ=60)

                                                       CTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCA                                       <  SRR4302536.4631459/94‑1 (MQ=60)

                                                       CTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCA                                       >  SRR4302536.2652668/1‑94 (MQ=60)

                                                        TTAGCACACGGATATTGCTATGGTCCGTTCTCACTAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAA                                      >  SRR4302536.2600079/1‑94 (MQ=60)

                                                        TTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGtagaaagaaacaa                                      >  SRR4302536.4691529/1‑81 (MQ=60)

                                                         TAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAAC                                     <  SRR4302536.6915770/94‑1 (MQ=60)

                                                          AGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACG                                    >  SRR4302536.4779101/1‑94 (MQ=60)

                                                          AGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACG                                    >  SRR4302536.460854/1‑94 (MQ=60)

                                                           GCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGC                                   >  SRR4302536.6317180/1‑94 (MQ=60)

                                                            CACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCT                                  >  SRR4302536.4794129/1‑94 (MQ=60)

                                                            CACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCT                                  >  SRR4302536.4531786/1‑94 (MQ=60)

                                                            CACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCT                                  <  SRR4302536.2954/94‑1 (MQ=60)

                                                            CACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCT                                  >  SRR4302536.1911523/1‑94 (MQ=60)

                                                             ACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTT                                 <  SRR4302536.3827331/94‑1 (MQ=60)

                                                               ACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCA                               <  SRR4302536.5669405/94‑1 (MQ=60)

                                                                CGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAG                              >  SRR4302536.6079215/1‑94 (MQ=60)

                                                                CGGATATTGCTATGGTCCGGTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAG                              <  SRR4302536.215262/94‑1 (MQ=60)

                                                                 GGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGC                             <  SRR4302536.3074728/94‑1 (MQ=60)

                                                                  GATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCG                            <  SRR4302536.2620696/94‑1 (MQ=60)

                                                                   ATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGT                           >  SRR4302536.1662780/1‑94 (MQ=60)

                                                                   ATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGT                           <  SRR4302536.6274747/94‑1 (MQ=60)

                                                                    TATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTA                          <  SRR4302536.4212209/94‑1 (MQ=60)

                                                                    TATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCACCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTA                          >  SRR4302536.5604908/1‑94 (MQ=60)

                                                                       TGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCC                       >  SRR4302536.500694/1‑94 (MQ=60)

                                                                       TGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGATTCCGCGTATCC                       >  SRR4302536.4877402/1‑94 (MQ=60)

                                                                        GCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCC                      >  SRR4302536.4180012/1‑94 (MQ=60)

                                                                         CTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCA                     >  SRR4302536.4762464/1‑94 (MQ=60)

                                                                         CTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATACCA                     >  SRR4302536.251077/1‑94 (MQ=60)

                                                                          TATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAG                    <  SRR4302536.1869402/94‑1 (MQ=60)

                                                                          TATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAG                    <  SRR4302536.8657/94‑1 (MQ=60)

                                                                           ATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGT                   <  SRR4302536.1123543/94‑1 (MQ=60)

                                                                           ATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGT                   <  SRR4302536.1270371/94‑1 (MQ=60)

                                                                            TGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTTGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGAG                  >  SRR4302536.5559180/1‑94 (MQ=60)

                                                                            TGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTG                  >  SRR4302536.5841339/1‑94 (MQ=60)

                                                                            TGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTG                  <  SRR4302536.3246575/94‑1 (MQ=60)

                                                                            TGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTG                  <  SRR4302536.2018475/94‑1 (MQ=60)

                                                                             GGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGC                 <  SRR4302536.6550117/94‑1 (MQ=60)

                                                                              GTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA                <  SRR4302536.6075889/94‑1 (MQ=60)

                                                                              GTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA                <  SRR4302536.220285/94‑1 (MQ=60)

                                                                               TCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAG               >  SRR4302536.1790505/1‑94 (MQ=60)

                                                                                CCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGC              >  SRR4302536.162749/1‑94 (MQ=60)

                                                                                CCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGC              >  SRR4302536.676392/1‑94 (MQ=60)

                                                                                   TTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATC           <  SRR4302536.705283/94‑1 (MQ=60)

                                                                                    TCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCA          <  SRR4302536.164091/94‑1 (MQ=60)

                                                                                     CTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCAC         <  SRR4302536.1808826/94‑1 (MQ=60)

                                                                                      TCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACT        >  SRR4302536.2445485/1‑94 (MQ=60)

                                                                                       CACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTG       >  SRR4302536.4062070/1‑94 (MQ=60)

                                                                                       CACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTG       <  SRR4302536.1677499/94‑1 (MQ=60)

                                                                                       CACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTG       <  SRR4302536.453143/94‑1 (MQ=60)

                                                                                       CACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTG       <  SRR4302536.64101/94‑1 (MQ=60)

                                                                                       CACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTG       >  SRR4302536.3232022/1‑94 (MQ=60)

                                                                                         CCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTT     <  SRR4302536.1784616/94‑1 (MQ=60)

                                                                                         CCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTT     <  SRR4302536.5252941/94‑1 (MQ=60)

                                                                                          CAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTT    <  SRR4302536.6528789/94‑1 (MQ=60)

                                                                                          CAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTT    <  SRR4302536.6528788/94‑1 (MQ=60)

                                                                                          CAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTT    <  SRR4302536.1851293/94‑1 (MQ=60)

                                                                                          CAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTT    >  SRR4302536.2509885/1‑94 (MQ=60)

                                                                                           AACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTT   <  SRR4302536.6482268/94‑1 (MQ=60)

                                                                                           AACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTT   >  SRR4302536.574658/1‑94 (MQ=60)

                                                                                           AACTGACGTAGCAGTTCACCGCCGAGGCGGTGGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTT   >  SRR4302536.360929/1‑94 (MQ=60)

                                                                                            ACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTTT  <  SRR4302536.1695606/94‑1 (MQ=60)

                                                                                            ACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTTT  <  SRR4302536.6443794/94‑1 (MQ=60)

                                                                                            ACTGACGTAGCAGTTCACCGCCGAGGCGGTTGGCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTTT  >  SRR4302536.2298140/1‑94 (MQ=60)

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTTT  >  NC_000913/2289486‑2289671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`